Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47401 * 2 1 4 4 N 1.46502 * 109.47345 * 239.99755 * 2 1 3 5 5 C 1.34771 * 119.99999 * 84.99923 * 4 2 1 6 6 O 1.21575 * 120.00333 * 0.02562 * 5 4 2 7 7 C 1.47668 * 120.00089 * 180.02562 * 5 4 2 8 8 C 1.40237 * 120.49746 * 180.02562 * 7 5 4 9 9 C 1.38016 * 118.35710 * 179.72763 * 8 7 5 10 10 C 1.39159 * 119.25130 * 0.49639 * 9 8 7 11 11 N 1.39496 * 119.52333 * 179.77160 * 10 9 8 12 12 C 1.37232 * 126.49506 * 184.98214 * 11 10 9 13 13 C 1.34586 * 106.82374 * 180.14101 * 12 11 10 14 14 N 1.34172 * 108.23844 * 359.61938 * 13 12 11 15 15 C 1.30452 * 109.38428 * 0.23912 * 14 13 12 16 16 N 1.32425 * 120.94379 * 359.49076 * 10 9 8 17 17 C 1.31636 * 121.80512 * 0.25719 * 16 10 9 18 18 C 1.53003 * 109.47089 * 119.99891 * 2 1 3 19 19 C 1.53944 * 113.74298 * 281.82332 * 18 2 1 20 20 N 1.47803 * 86.03852 * 222.08362 * 19 18 2 21 21 C 1.36938 * 134.45628 * 204.64171 * 20 19 18 22 22 H 1.08006 * 120.00158 * 179.86572 * 21 20 19 23 23 C 1.38814 * 120.00166 * 359.86810 * 21 20 19 24 24 N 1.31613 * 119.99524 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47159 * 60.00290 * 25 23 21 27 27 H 1.48499 * 109.46574 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47299 * 300.00033 * 25 23 21 29 29 C 1.47576 * 91.05255 * 24.54844 * 20 19 18 30 30 H 1.08997 * 109.46763 * 60.07790 * 1 2 3 31 31 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47102 * 300.07246 * 1 2 3 33 33 H 0.96999 * 119.99770 * 265.00455 * 4 2 1 34 34 H 1.08003 * 120.81967 * 359.97438 * 8 7 5 35 35 H 1.07994 * 120.37279 * 180.26946 * 9 8 7 36 36 H 1.08000 * 126.58685 * 359.97438 * 12 11 10 37 37 H 1.08001 * 125.87969 * 179.88396 * 13 12 11 38 38 H 1.08005 * 125.73086 * 179.97438 * 15 14 13 39 39 H 1.08005 * 119.68060 * 179.97438 * 17 16 10 40 40 H 1.09004 * 112.94501 * 53.41273 * 18 2 1 41 41 H 1.09005 * 113.76444 * 336.35015 * 19 18 2 42 42 H 1.08997 * 113.77325 * 107.73959 * 19 18 2 43 43 H 0.97003 * 119.99515 * 180.02562 * 24 23 21 44 44 H 1.09007 * 113.77277 * 221.15371 * 29 20 19 45 45 H 1.09005 * 113.87444 * 89.76506 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1613 -2.4117 7 6 2.6388 -0.7147 -3.5629 8 6 2.7773 -0.0251 -4.7762 9 6 3.2462 -0.7178 -5.8740 10 6 3.5538 -2.0688 -5.7451 11 7 4.0236 -2.7755 -6.8522 12 6 4.2780 -4.1227 -6.9127 13 6 4.7162 -4.3808 -8.1588 14 7 4.7236 -3.2297 -8.8482 15 6 4.3112 -2.2611 -8.0779 16 7 3.4121 -2.6918 -4.5851 17 6 2.9731 -2.0685 -3.5120 18 6 2.0400 -0.7212 1.2493 19 6 1.9744 0.1329 2.5283 20 7 3.3097 -0.4178 2.8417 21 6 4.0192 -0.6143 3.9963 22 1 5.0065 -1.0504 3.9559 23 6 3.4696 -0.2530 5.2188 24 7 2.2667 0.2788 5.2679 25 14 4.4374 -0.5218 6.7938 26 1 5.7077 0.2447 6.7312 27 1 3.6351 -0.0554 7.9532 28 1 4.7387 -1.9675 6.9492 29 6 3.5701 -0.6730 1.4117 30 1 -0.3633 0.5126 -0.8907 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 2.2490 -1.6318 -1.1525 34 1 2.5270 1.0230 -4.8486 35 1 3.3695 -0.2178 -6.8233 36 1 4.1534 -4.8379 -6.1131 37 1 5.0073 -5.3486 -8.5396 38 1 4.2148 -1.2243 -8.3650 39 1 2.8703 -2.6103 -2.5834 40 1 1.6175 -1.7193 1.3660 41 1 1.9751 1.2066 2.3400 42 1 1.1953 -0.1775 3.2245 43 1 1.8828 0.5316 6.1222 44 1 4.0627 -1.6258 1.2179 45 1 4.0407 0.1623 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970239514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = 111.014502 kcal Electronic energy + Delta-G solvation = -28058.762203 eV Core-core repulsion = 24078.956560 eV Total energy + Delta-G solvation = -3979.805643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.42310 -41.71273 -40.55557 -39.48730 -36.27516 -35.41030 -34.16958 -33.84573 -32.44461 -30.96393 -30.24514 -29.29918 -26.69125 -26.07153 -25.55707 -25.04197 -23.27206 -22.37447 -22.00046 -21.47959 -20.86202 -19.93449 -18.88429 -18.67209 -17.91499 -16.98542 -16.88487 -16.74357 -16.36741 -16.10588 -15.90202 -15.79519 -15.20281 -14.95679 -14.89449 -14.78654 -14.69352 -14.55033 -14.23959 -14.08017 -13.76404 -13.39004 -13.25114 -13.06512 -12.93993 -12.65365 -12.41824 -12.04675 -11.88730 -11.80632 -11.62523 -11.30404 -11.26479 -11.19434 -11.18353 -10.85337 -10.76561 -10.17166 -9.90501 -9.55173 -8.91247 -7.90405 -5.23427 -0.82800 -0.01773 0.95159 1.31873 1.45487 1.48490 1.54646 1.82476 2.02527 2.05465 2.47615 2.67215 3.01892 3.30033 3.39018 3.39886 3.51942 3.63030 3.66584 3.75759 3.88847 3.97474 4.06854 4.28379 4.38934 4.42801 4.46210 4.52971 4.59683 4.73966 4.78601 4.83010 4.87146 4.88310 4.97645 5.06676 5.10910 5.16407 5.26344 5.33643 5.48441 5.55811 5.62179 5.66877 5.95213 6.00838 6.47855 6.52859 6.89348 6.92677 7.14956 7.61483 8.56968 9.26303 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.001966 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.116513 B =14241.489593 C =15200.054691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.066 0.934 4 N -0.701 5.701 5 C 0.566 3.434 6 O -0.572 6.572 7 C -0.201 4.201 8 C 0.010 3.990 9 C -0.174 4.174 10 C 0.354 3.646 11 N -0.420 5.420 12 C -0.036 4.036 13 C -0.040 4.040 14 N -0.512 5.512 15 C 0.200 3.800 16 N -0.517 5.517 17 C 0.176 3.824 18 C -0.109 4.109 19 C 0.170 3.830 20 N -0.645 5.645 21 C -0.236 4.236 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.274 1.274 29 C 0.126 3.874 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.249 0.751 39 H 0.193 0.807 40 H 0.108 0.892 41 H 0.012 0.988 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.063 0.937 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -6.525 -26.387 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.084 0.916 4 N -0.352 5.352 5 C 0.353 3.647 6 O -0.452 6.452 7 C -0.207 4.207 8 C -0.016 4.016 9 C -0.196 4.196 10 C 0.126 3.874 11 N -0.102 5.102 12 C -0.165 4.165 13 C -0.183 4.183 14 N -0.229 5.229 15 C -0.081 4.081 16 N -0.228 5.228 17 C 0.016 3.984 18 C -0.129 4.129 19 C 0.044 3.956 20 N -0.371 5.371 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.806 3.194 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.200 1.200 29 C 0.001 3.999 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.184 0.816 35 H 0.202 0.798 36 H 0.209 0.791 37 H 0.210 0.790 38 H 0.265 0.735 39 H 0.210 0.790 40 H 0.126 0.874 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.551 -6.526 -26.801 27.590 hybrid contribution 0.160 0.532 2.160 2.231 sum -0.391 -5.995 -24.641 25.363 Atomic orbital electron populations 1.22052 0.93899 1.03107 1.02038 1.20798 0.94788 0.96036 0.82575 0.91623 1.45845 1.66019 1.14625 1.08686 1.18126 0.77215 0.86045 0.83282 1.90791 1.52066 1.16955 1.85419 1.20955 1.07990 0.96278 0.95502 1.21806 0.88905 1.01485 0.89409 1.21824 1.03385 0.91783 1.02606 1.18641 0.93417 0.89266 0.86064 1.43283 1.48667 1.08546 1.09732 1.23238 1.06999 0.84708 1.01545 1.22804 1.05833 0.98357 0.91289 1.70352 1.19791 1.00133 1.32639 1.26166 1.01030 1.01979 0.78970 1.67016 1.17155 1.40029 0.98649 1.23105 0.88959 0.90228 0.96063 1.23469 0.95932 1.00485 0.92993 1.22143 0.88157 0.93774 0.91544 1.46410 1.17352 1.72135 1.01205 1.19380 0.98774 1.34082 0.84222 0.89983 1.25619 0.98163 1.01645 1.00656 1.69983 1.16845 1.48636 1.24679 0.85171 0.77429 0.78097 0.78751 1.20687 1.22068 1.19964 1.22701 0.94868 0.98528 0.83768 0.92670 0.90663 0.91829 0.74927 0.81555 0.79808 0.79091 0.78956 0.73530 0.79017 0.87417 0.97019 0.93533 0.94246 0.91928 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.44 71.98 0.68 -3.00 16 2 C 0.16 4.36 2.29 44.99 0.10 4.46 16 3 H 0.07 2.14 7.48 -2.39 -0.02 2.12 16 4 N -0.70 -14.19 4.90 -445.58 -2.18 -16.37 16 5 C 0.57 12.60 7.74 86.74 0.67 13.27 16 6 O -0.57 -17.19 16.08 -3.95 -0.06 -17.25 16 7 C -0.20 -3.29 5.89 -19.99 -0.12 -3.41 16 8 C 0.01 0.14 9.70 22.70 0.22 0.36 16 9 C -0.17 -1.79 9.48 22.44 0.21 -1.58 16 10 C 0.35 5.23 7.49 132.89 1.00 6.23 16 11 N -0.42 -6.32 2.98 -355.78 -1.06 -7.38 16 12 C -0.04 -0.56 11.16 83.01 0.93 0.36 16 13 C -0.04 -0.63 11.85 83.50 0.99 0.36 16 14 N -0.51 -9.39 11.24 -199.64 -2.24 -11.64 16 15 C 0.20 2.63 11.89 179.97 2.14 4.77 16 16 N -0.52 -8.44 9.87 -191.85 -1.89 -10.33 16 17 C 0.18 2.46 10.71 85.04 0.91 3.37 16 18 C -0.11 -3.49 3.35 -10.13 -0.03 -3.52 16 19 C 0.17 7.71 6.98 86.44 0.60 8.31 16 20 N -0.64 -32.21 3.70 -716.18 -2.65 -34.86 16 21 C -0.24 -13.12 10.70 84.03 0.90 -12.22 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 24 N -0.95 -57.00 11.39 21.65 0.25 -56.76 16 25 Si 0.98 45.40 29.55 68.60 2.03 47.42 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 C 0.13 4.66 8.38 86.49 0.72 5.38 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 33 H 0.41 5.81 6.66 -92.71 -0.62 5.20 16 34 H 0.17 2.02 7.73 -2.91 -0.02 1.99 16 35 H 0.18 0.51 6.75 -2.91 -0.02 0.49 16 36 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.25 0.97 7.05 -2.91 -0.02 0.95 16 39 H 0.19 1.65 6.41 -2.91 -0.02 1.64 16 40 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.01 0.57 8.03 -2.38 -0.02 0.55 16 42 H 0.05 2.37 7.17 -2.39 -0.02 2.35 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.03 1.22 8.10 -2.38 -0.02 1.20 16 Total: -1.00 -78.14 381.85 2.98 -75.16 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.41 Total: 12.23 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 10.39 Total: 19.77 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -9.78 Total: -137.33 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.14 2.98 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970239514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.173 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds