Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 N 1.46499 * 109.47171 * 240.00095 * 2 1 3 5 5 C 1.34781 * 120.00216 * 85.00326 * 4 2 1 6 6 O 1.21549 * 119.99324 * 359.97438 * 5 4 2 7 7 C 1.47855 * 120.00342 * 180.02562 * 5 4 2 8 8 C 1.39657 * 120.08490 * 359.71633 * 7 5 4 9 9 C 1.38018 * 120.09478 * 179.78750 * 8 7 5 10 10 C 1.38162 * 120.27261 * 0.47419 * 9 8 7 11 11 C 1.39403 * 120.17267 * 359.78721 * 10 9 8 12 12 C 1.48422 * 120.05421 * 180.02562 * 11 10 9 13 13 N 1.33983 * 125.64711 * 359.97011 * 12 11 10 14 14 C 1.30677 * 109.77692 * 179.97438 * 13 12 11 15 15 N 1.34518 * 108.29631 * 0.02562 * 14 13 12 16 16 H 0.97001 * 126.74014 * 180.02562 * 15 14 13 17 17 N 1.31489 * 125.65703 * 179.66930 * 12 11 10 18 18 C 1.39100 * 119.90169 * 359.97438 * 11 10 9 19 19 C 1.53001 * 109.47155 * 120.00552 * 2 1 3 20 20 C 1.53955 * 113.73896 * 281.99555 * 19 2 1 21 21 N 1.47816 * 86.03640 * 222.08348 * 20 19 2 22 22 C 1.36934 * 134.45354 * 204.64801 * 21 20 19 23 23 H 1.08001 * 119.99583 * 179.87061 * 22 21 20 24 24 C 1.38812 * 120.00072 * 359.86186 * 22 21 20 25 25 N 1.31615 * 120.00178 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99598 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47184 * 90.00327 * 26 24 22 28 28 H 1.48502 * 109.47020 * 209.99960 * 26 24 22 29 29 H 1.48500 * 109.47623 * 330.00081 * 26 24 22 30 30 C 1.47586 * 91.04989 * 24.55023 * 21 20 19 31 31 H 1.08998 * 109.47098 * 55.80991 * 1 2 3 32 32 H 1.09000 * 109.47575 * 295.80834 * 1 2 3 33 33 H 1.09008 * 109.47315 * 175.80448 * 1 2 3 34 34 H 0.97004 * 120.00234 * 264.99973 * 4 2 1 35 35 H 1.07995 * 119.95411 * 0.02841 * 8 7 5 36 36 H 1.08004 * 119.86617 * 180.21485 * 9 8 7 37 37 H 1.08002 * 119.91265 * 179.75957 * 10 9 8 38 38 H 1.08002 * 125.84981 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.13622 * 179.97438 * 18 11 10 40 40 H 1.08997 * 112.94525 * 53.58733 * 19 2 1 41 41 H 1.09001 * 113.76698 * 336.35106 * 20 19 2 42 42 H 1.09001 * 113.76676 * 107.74455 * 20 19 2 43 43 H 0.96991 * 120.00127 * 180.02562 * 25 24 22 44 44 H 1.09003 * 113.76558 * 221.14959 * 30 21 20 45 45 H 1.08999 * 113.87180 * 89.76821 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8576 1.1610 -2.4117 7 6 2.6394 -0.7153 -3.5646 8 6 2.9771 -2.0690 -3.5026 9 6 3.4325 -2.7210 -4.6306 10 6 3.5663 -2.0375 -5.8239 11 6 3.2377 -0.6848 -5.8971 12 6 3.3819 0.0468 -7.1805 13 7 3.8161 -0.4784 -8.3341 14 6 3.8201 0.4397 -9.2640 15 7 3.3835 1.5911 -8.7226 16 1 3.2807 2.4429 -9.1752 17 7 3.0995 1.3161 -7.3751 18 6 2.7733 -0.0217 -4.7659 19 6 2.0399 -0.7214 1.2492 20 6 1.9704 0.1314 2.5291 21 7 3.3067 -0.4165 2.8438 22 6 4.0150 -0.6125 3.9992 23 1 5.0034 -1.0460 3.9597 24 6 3.4627 -0.2539 5.2212 25 7 2.2581 0.2740 5.2694 26 14 4.4294 -0.5208 6.7972 27 1 5.2411 0.6876 7.0907 28 1 3.4885 -0.7694 7.9189 29 1 5.3270 -1.6926 6.6351 30 6 3.5697 -0.6694 1.4138 31 1 -0.3633 0.5775 -0.8500 32 1 -0.3634 0.4474 0.9251 33 1 -0.3634 -1.0250 -0.0752 34 1 2.2490 -1.6318 -1.1527 35 1 2.8781 -2.6074 -2.5717 36 1 3.6894 -3.7688 -4.5793 37 1 3.9270 -2.5525 -6.7020 38 1 4.1222 0.2982 -10.2912 39 1 2.5179 1.0264 -4.8183 40 1 1.6199 -1.7205 1.3641 41 1 1.9687 1.2052 2.3420 42 1 1.1911 -0.1819 3.2239 43 1 1.8724 0.5249 6.1232 44 1 4.0650 -1.6208 1.2198 45 1 4.0391 0.1676 0.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970261176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 133.036570 kcal Electronic energy + Delta-G solvation = -27989.605451 eV Core-core repulsion = 24010.754756 eV Total energy + Delta-G solvation = -3978.850695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.46671 -40.27643 -38.78046 -37.77522 -34.82559 -33.64685 -32.34077 -32.14492 -31.55644 -30.47416 -29.79115 -27.44806 -25.02729 -24.37962 -24.28779 -23.69355 -22.59663 -21.45198 -20.96184 -20.07010 -19.23271 -18.71335 -17.60146 -16.77025 -16.35838 -16.03570 -15.88846 -15.59647 -15.25601 -14.85372 -14.69944 -14.38826 -14.06276 -13.87522 -13.82501 -13.45763 -13.23112 -12.87021 -12.58280 -12.27205 -12.03515 -11.99026 -11.58738 -11.53719 -11.37525 -11.19334 -10.90357 -10.85975 -10.64373 -10.52546 -10.39762 -10.32103 -10.07688 -9.79219 -9.64076 -9.39400 -9.23229 -8.92657 -8.79372 -8.74826 -6.84729 -5.74312 -3.06204 0.43598 0.84360 1.37473 2.19607 2.43808 3.03464 3.20164 3.40916 3.45544 3.47560 3.57364 3.77057 4.15361 4.44549 4.47522 4.58842 4.70369 4.81227 4.99297 5.14197 5.19697 5.24174 5.39434 5.43256 5.57218 5.64032 5.69042 5.72540 5.80165 5.85353 6.02616 6.05839 6.11110 6.12281 6.16857 6.32697 6.39701 6.48342 6.52682 6.57418 6.62532 6.66599 6.84368 7.25347 7.39317 7.58217 7.58467 7.65966 8.00825 8.33598 9.07340 9.73527 10.63029 11.43027 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.001908 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.606808 B =14675.045180 C =14942.465206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.556 3.444 6 O -0.537 6.537 7 C -0.133 4.133 8 C -0.068 4.068 9 C -0.130 4.130 10 C -0.054 4.054 11 C -0.029 4.029 12 C 0.271 3.729 13 N -0.536 5.536 14 C 0.264 3.736 15 N -0.483 5.483 16 H 0.444 0.556 17 N -0.299 5.299 18 C -0.026 4.026 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.612 5.612 22 C -0.222 4.222 23 H 0.079 0.921 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.125 3.875 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.226 0.774 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -4.290 -30.459 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.343 3.657 6 O -0.415 6.415 7 C -0.136 4.136 8 C -0.088 4.088 9 C -0.148 4.148 10 C -0.074 4.074 11 C -0.032 4.032 12 C -0.008 4.008 13 N -0.263 5.263 14 C -0.035 4.035 15 N -0.202 5.202 16 H 0.290 0.710 17 N -0.128 5.128 18 C -0.047 4.047 19 C -0.167 4.167 20 C 0.050 3.950 21 N -0.338 5.338 22 C -0.350 4.350 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.207 1.207 30 C -0.001 4.001 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.242 0.758 39 H 0.162 0.838 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.405 -3.314 -29.605 29.793 hybrid contribution 0.739 0.153 0.218 0.785 sum 0.334 -3.161 -29.388 29.559 Atomic orbital electron populations 1.22115 0.95366 1.01731 1.02458 1.21146 0.93853 0.97536 0.82858 0.89332 1.46058 1.66613 1.14010 1.09631 1.18162 0.77923 0.86550 0.83060 1.90778 1.50329 1.15462 1.84941 1.19934 1.04799 0.94460 0.94421 1.21525 0.95001 0.93241 0.99031 1.21066 1.00997 1.00618 0.92136 1.21378 0.95018 0.92500 0.98492 1.17319 1.04527 0.93099 0.88251 1.22271 0.96778 0.88496 0.93304 1.70503 1.24296 1.32469 0.99071 1.26109 0.95126 0.81851 1.00403 1.48145 1.50809 1.13016 1.08184 0.71008 1.78333 1.24748 1.16346 0.93333 1.21292 0.92818 1.00708 0.89833 1.23859 0.97592 1.00763 0.94516 1.22234 0.89614 0.93930 0.89239 1.45992 1.16201 1.72031 0.99625 1.19023 0.98342 1.34812 0.82801 0.90325 1.24779 0.97054 1.01216 0.97485 1.69803 1.15189 1.47484 1.24402 0.86129 0.78766 0.77767 0.83150 1.21663 1.21632 1.20652 1.22540 0.93076 0.97695 0.86795 0.92744 0.90993 0.92754 0.76752 0.84950 0.84589 0.84301 0.75831 0.83802 0.89297 0.95393 0.90680 0.93642 0.94150 0.94976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.46 37.15 0.35 -1.91 16 2 C 0.15 2.35 2.29 -67.93 -0.16 2.20 16 3 H 0.09 1.61 7.49 -51.93 -0.39 1.22 16 4 N -0.71 -9.48 4.90 -54.75 -0.27 -9.75 16 5 C 0.56 8.19 7.74 -12.32 -0.10 8.10 16 6 O -0.54 -9.90 16.00 5.32 0.09 -9.82 16 7 C -0.13 -1.61 5.87 -105.01 -0.62 -2.23 16 8 C -0.07 -0.63 9.54 -39.13 -0.37 -1.00 16 9 C -0.13 -1.03 10.02 -39.69 -0.40 -1.43 16 10 C -0.05 -0.49 9.68 -39.18 -0.38 -0.87 16 11 C -0.03 -0.33 5.87 -104.95 -0.62 -0.95 16 12 C 0.27 3.09 7.77 -156.62 -1.22 1.87 16 13 N -0.54 -5.11 10.81 -12.38 -0.13 -5.24 16 14 C 0.26 1.44 13.11 -90.70 -1.19 0.25 16 15 N -0.48 -3.02 7.44 29.52 0.22 -2.80 16 16 H 0.44 1.05 8.96 -182.35 -1.63 -0.58 16 17 N -0.30 -3.33 12.42 32.10 0.40 -2.94 16 18 C -0.03 -0.32 9.22 -38.84 -0.36 -0.68 16 19 C -0.15 -2.63 3.35 -89.69 -0.30 -2.93 16 20 C 0.18 4.09 6.90 -2.83 -0.02 4.07 16 21 N -0.61 -15.80 3.70 -177.65 -0.66 -16.46 16 22 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 23 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.92 -27.49 11.39 55.49 0.63 -26.86 16 26 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.13 2.54 8.38 -2.96 -0.02 2.51 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.05 7.99 -51.93 -0.42 0.63 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.40 4.21 6.63 -40.82 -0.27 3.94 16 35 H 0.13 0.92 6.39 -52.49 -0.34 0.58 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.14 1.10 7.82 -52.49 -0.41 0.69 16 38 H 0.23 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.14 2.00 7.42 -52.49 -0.39 1.61 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.07 1.92 7.16 -51.93 -0.37 1.54 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -37.75 383.76 -11.75 -49.50 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.14 Total: 1.08 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -5.65 Total: 0.18 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.19 Total: -64.04 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.75 -11.75 -49.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970261176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.535 kcal (2) G-P(sol) polarization free energy of solvation -37.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds