Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 N 1.46499 * 109.47171 * 240.00095 * 2 1 3 5 5 C 1.34781 * 120.00216 * 85.00326 * 4 2 1 6 6 O 1.21549 * 119.99324 * 359.97438 * 5 4 2 7 7 C 1.47855 * 120.00342 * 180.02562 * 5 4 2 8 8 C 1.39657 * 120.08490 * 359.71633 * 7 5 4 9 9 C 1.38018 * 120.09478 * 179.78750 * 8 7 5 10 10 C 1.38162 * 120.27261 * 0.47419 * 9 8 7 11 11 C 1.39403 * 120.17267 * 359.78721 * 10 9 8 12 12 C 1.48422 * 120.05421 * 180.02562 * 11 10 9 13 13 N 1.33983 * 125.64711 * 359.97011 * 12 11 10 14 14 C 1.30677 * 109.77692 * 179.97438 * 13 12 11 15 15 N 1.34518 * 108.29631 * 0.02562 * 14 13 12 16 16 H 0.97001 * 126.74014 * 180.02562 * 15 14 13 17 17 N 1.31489 * 125.65703 * 179.66930 * 12 11 10 18 18 C 1.39100 * 119.90169 * 359.97438 * 11 10 9 19 19 C 1.53001 * 109.47155 * 120.00552 * 2 1 3 20 20 C 1.53955 * 113.73896 * 281.99555 * 19 2 1 21 21 N 1.47816 * 86.03640 * 222.08348 * 20 19 2 22 22 C 1.36934 * 134.45354 * 204.64801 * 21 20 19 23 23 H 1.08001 * 119.99583 * 179.87061 * 22 21 20 24 24 C 1.38812 * 120.00072 * 359.86186 * 22 21 20 25 25 N 1.31615 * 120.00178 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99598 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47184 * 90.00327 * 26 24 22 28 28 H 1.48502 * 109.47020 * 209.99960 * 26 24 22 29 29 H 1.48500 * 109.47623 * 330.00081 * 26 24 22 30 30 C 1.47586 * 91.04989 * 24.55023 * 21 20 19 31 31 H 1.08998 * 109.47098 * 55.80991 * 1 2 3 32 32 H 1.09000 * 109.47575 * 295.80834 * 1 2 3 33 33 H 1.09008 * 109.47315 * 175.80448 * 1 2 3 34 34 H 0.97004 * 120.00234 * 264.99973 * 4 2 1 35 35 H 1.07995 * 119.95411 * 0.02841 * 8 7 5 36 36 H 1.08004 * 119.86617 * 180.21485 * 9 8 7 37 37 H 1.08002 * 119.91265 * 179.75957 * 10 9 8 38 38 H 1.08002 * 125.84981 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.13622 * 179.97438 * 18 11 10 40 40 H 1.08997 * 112.94525 * 53.58733 * 19 2 1 41 41 H 1.09001 * 113.76698 * 336.35106 * 20 19 2 42 42 H 1.09001 * 113.76676 * 107.74455 * 20 19 2 43 43 H 0.96991 * 120.00127 * 180.02562 * 25 24 22 44 44 H 1.09003 * 113.76558 * 221.14959 * 30 21 20 45 45 H 1.08999 * 113.87180 * 89.76821 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8576 1.1610 -2.4117 7 6 2.6394 -0.7153 -3.5646 8 6 2.9771 -2.0690 -3.5026 9 6 3.4325 -2.7210 -4.6306 10 6 3.5663 -2.0375 -5.8239 11 6 3.2377 -0.6848 -5.8971 12 6 3.3819 0.0468 -7.1805 13 7 3.8161 -0.4784 -8.3341 14 6 3.8201 0.4397 -9.2640 15 7 3.3835 1.5911 -8.7226 16 1 3.2807 2.4429 -9.1752 17 7 3.0995 1.3161 -7.3751 18 6 2.7733 -0.0217 -4.7659 19 6 2.0399 -0.7214 1.2492 20 6 1.9704 0.1314 2.5291 21 7 3.3067 -0.4165 2.8438 22 6 4.0150 -0.6125 3.9992 23 1 5.0034 -1.0460 3.9597 24 6 3.4627 -0.2539 5.2212 25 7 2.2581 0.2740 5.2694 26 14 4.4294 -0.5208 6.7972 27 1 5.2411 0.6876 7.0907 28 1 3.4885 -0.7694 7.9189 29 1 5.3270 -1.6926 6.6351 30 6 3.5697 -0.6694 1.4138 31 1 -0.3633 0.5775 -0.8500 32 1 -0.3634 0.4474 0.9251 33 1 -0.3634 -1.0250 -0.0752 34 1 2.2490 -1.6318 -1.1527 35 1 2.8781 -2.6074 -2.5717 36 1 3.6894 -3.7688 -4.5793 37 1 3.9270 -2.5525 -6.7020 38 1 4.1222 0.2982 -10.2912 39 1 2.5179 1.0264 -4.8183 40 1 1.6199 -1.7205 1.3641 41 1 1.9687 1.2052 2.3420 42 1 1.1911 -0.1819 3.2239 43 1 1.8724 0.5249 6.1232 44 1 4.0650 -1.6208 1.2198 45 1 4.0391 0.1676 0.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970261176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 107.904318 kcal Electronic energy + Delta-G solvation = -27990.695267 eV Core-core repulsion = 24010.754756 eV Total energy + Delta-G solvation = -3979.940511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.06111 -41.37615 -40.03182 -39.09830 -36.23925 -34.43113 -34.04695 -32.92244 -32.61210 -31.41364 -30.73067 -29.30943 -26.64246 -25.85506 -25.01814 -24.98405 -23.38287 -22.49338 -22.08278 -21.23757 -20.54433 -19.44611 -18.79393 -18.45571 -17.47560 -17.00815 -16.84119 -16.51306 -16.31087 -16.21820 -15.85567 -15.76922 -15.35626 -15.02676 -14.78496 -14.70554 -14.52371 -14.05187 -13.76248 -13.35355 -13.25973 -13.18509 -13.07155 -12.95582 -12.75893 -12.66515 -12.35515 -12.32300 -12.00452 -11.79345 -11.58390 -11.52221 -11.21824 -11.17429 -11.04743 -10.94136 -10.85835 -10.18484 -9.91685 -9.62349 -8.91217 -7.89632 -5.23085 -0.31612 0.01177 0.82781 1.45828 1.48081 1.56644 1.69691 1.74531 2.08207 2.11573 2.48148 2.92636 2.98353 3.30449 3.40076 3.52752 3.65792 3.82307 3.92986 3.98239 4.04856 4.20677 4.25964 4.28327 4.45111 4.51541 4.58546 4.68158 4.79114 4.84834 4.88020 4.92257 4.97706 5.07934 5.10986 5.13387 5.26242 5.29980 5.31550 5.40103 5.45329 5.51763 5.55709 5.66555 5.82220 5.94971 6.22555 6.58046 6.92942 6.99185 7.23189 7.61735 8.57612 9.27465 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.001908 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.606808 B =14675.045180 C =14942.465206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.059 0.941 4 N -0.699 5.699 5 C 0.556 3.444 6 O -0.584 6.584 7 C -0.149 4.149 8 C -0.060 4.060 9 C -0.116 4.116 10 C -0.047 4.047 11 C -0.042 4.042 12 C 0.253 3.747 13 N -0.563 5.563 14 C 0.282 3.718 15 N -0.475 5.475 16 H 0.459 0.541 17 N -0.345 5.345 18 C -0.043 4.043 19 C -0.107 4.107 20 C 0.170 3.830 21 N -0.643 5.643 22 C -0.235 4.235 23 H 0.084 0.916 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.979 3.021 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.265 1.265 30 C 0.126 3.874 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.281 0.719 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -7.342 -32.581 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.077 0.923 4 N -0.350 5.350 5 C 0.345 3.655 6 O -0.466 6.466 7 C -0.152 4.152 8 C -0.080 4.080 9 C -0.134 4.134 10 C -0.067 4.067 11 C -0.045 4.045 12 C -0.027 4.027 13 N -0.292 5.292 14 C -0.015 4.015 15 N -0.195 5.195 16 H 0.308 0.692 17 N -0.175 5.175 18 C -0.065 4.065 19 C -0.127 4.127 20 C 0.044 3.956 21 N -0.370 5.370 22 C -0.363 4.363 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.603 5.603 26 Si 0.807 3.193 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.190 1.190 30 C 0.002 3.998 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.172 0.828 38 H 0.296 0.704 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.829 -6.389 -31.780 32.426 hybrid contribution 0.414 1.140 0.696 1.398 sum 1.242 -5.250 -31.084 31.549 Atomic orbital electron populations 1.22048 0.94005 1.03096 1.01892 1.20788 0.94784 0.95903 0.82906 0.92299 1.45795 1.66153 1.14647 1.08406 1.18583 0.77007 0.86036 0.83888 1.90754 1.52447 1.17679 1.85692 1.19742 1.06735 0.95858 0.92861 1.21816 0.93719 0.91683 1.00750 1.21490 0.98971 1.02132 0.90797 1.21649 0.93893 0.91491 0.99686 1.17499 1.04779 0.94183 0.87990 1.22415 0.97458 0.88749 0.94058 1.70480 1.25658 1.33944 0.99121 1.27162 0.92375 0.80422 1.01585 1.48084 1.50321 1.14266 1.06781 0.69155 1.78234 1.26210 1.16936 0.96130 1.21120 0.94530 0.99766 0.91050 1.23457 0.96008 1.00524 0.92730 1.22142 0.88293 0.93653 0.91544 1.46429 1.17139 1.72226 1.01188 1.19445 0.98702 1.34066 0.84119 0.89812 1.25646 0.98148 1.01681 1.00740 1.69996 1.16750 1.48898 1.24649 0.85071 0.77397 0.77906 0.78915 1.21775 1.21921 1.18975 1.22688 0.94851 0.98551 0.83737 0.93258 0.91679 0.90354 0.74680 0.82174 0.80694 0.82804 0.70416 0.86650 0.87126 0.97342 0.93352 0.94257 0.91575 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.46 71.98 0.68 -3.59 16 2 C 0.16 5.01 2.29 44.99 0.10 5.11 16 3 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 4 N -0.70 -17.65 4.90 -445.41 -2.18 -19.83 16 5 C 0.56 16.52 7.74 86.79 0.67 17.19 16 6 O -0.58 -22.75 16.00 -3.87 -0.06 -22.81 16 7 C -0.15 -3.56 5.87 -20.12 -0.12 -3.68 16 8 C -0.06 -0.93 9.54 22.56 0.22 -0.71 16 9 C -0.12 -1.42 10.02 22.20 0.22 -1.19 16 10 C -0.05 -0.76 9.68 22.53 0.22 -0.54 16 11 C -0.04 -0.94 5.87 -20.08 -0.12 -1.06 16 12 C 0.25 5.81 7.77 137.47 1.07 6.88 16 13 N -0.56 -9.99 10.81 -193.08 -2.09 -12.07 16 14 C 0.28 2.43 13.11 180.38 2.36 4.80 16 15 N -0.47 -5.50 7.44 -60.52 -0.45 -5.95 16 16 H 0.46 1.69 8.96 -213.11 -1.91 -0.22 16 17 N -0.34 -7.98 12.42 -52.34 -0.65 -8.63 16 18 C -0.04 -1.14 9.22 22.75 0.21 -0.93 16 19 C -0.11 -3.73 3.35 -10.13 -0.03 -3.77 16 20 C 0.17 8.10 6.90 86.44 0.60 8.70 16 21 N -0.64 -33.34 3.70 -715.97 -2.65 -35.99 16 22 C -0.23 -13.35 10.70 84.03 0.90 -12.45 16 23 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.95 -58.36 11.39 21.65 0.25 -58.11 16 26 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 30 C 0.13 4.98 8.38 86.49 0.72 5.71 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.91 7.99 -2.39 -0.02 1.89 16 33 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.41 7.48 6.63 -92.70 -0.61 6.87 16 35 H 0.16 1.50 6.39 -2.91 -0.02 1.48 16 36 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.15 2.01 7.82 -2.91 -0.02 1.99 16 38 H 0.28 -1.26 8.06 -2.91 -0.02 -1.29 16 39 H 0.12 3.62 7.42 -2.91 -0.02 3.60 16 40 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.01 0.44 8.04 -2.39 -0.02 0.43 16 42 H 0.05 2.55 7.16 -2.39 -0.02 2.54 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.03 1.17 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -87.32 383.76 0.88 -86.44 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -1.48 Total: 11.80 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 8.17 Total: 16.91 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -7.78 Total: -140.59 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -87.32 0.88 -86.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970261176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.341 kcal (2) G-P(sol) polarization free energy of solvation -87.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds