Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21507 * 120.00190 * 359.97438 * 5 4 2 7 7 C 1.48161 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.39944 * 120.89213 * 0.02562 * 7 5 4 9 9 C 1.38056 * 119.13690 * 180.02562 * 8 7 5 10 10 N 1.31839 * 120.98136 * 0.02562 * 9 8 7 11 11 C 1.32238 * 121.97348 * 359.97438 * 10 9 8 12 12 N 1.39834 * 119.62562 * 179.97438 * 11 10 9 13 13 C 1.35845 * 126.10306 * 359.71842 * 12 11 10 14 14 C 1.35282 * 107.61104 * 179.83454 * 13 12 11 15 15 C 1.39949 * 107.97039 * 0.42497 * 14 13 12 16 16 N 1.30818 * 108.36869 * 359.73467 * 15 14 13 17 17 C 1.38912 * 120.74994 * 359.71574 * 11 10 9 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47062 * 87.98889 * 220.34720 * 19 18 2 21 21 C 1.36934 * 136.06073 * 207.09188 * 20 19 18 22 22 H 1.08001 * 120.00026 * 6.47907 * 21 20 19 23 23 C 1.38805 * 120.00345 * 186.48472 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.26684 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.26795 * 23 21 20 26 26 H 1.48507 * 109.47008 * 265.00931 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47068 * 87.88330 * 27.33967 * 20 19 18 30 30 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 31 31 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 32 32 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.07998 * 120.43380 * 359.97438 * 8 7 5 35 35 H 1.07995 * 119.50800 * 179.97438 * 9 8 7 36 36 H 1.08003 * 126.19314 * 0.02562 * 13 12 11 37 37 H 1.07999 * 126.00813 * 180.12114 * 14 13 12 38 38 H 1.07997 * 125.81537 * 179.73421 * 15 14 13 39 39 H 1.07997 * 120.53266 * 180.28613 * 17 11 10 40 40 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.46025 * 87.44010 * 29 20 19 45 45 H 1.09003 * 113.47098 * 217.87906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8585 1.1607 2.4116 7 6 2.6405 -0.7170 3.5669 8 6 2.9788 -2.0743 3.5250 9 6 3.4344 -2.6892 4.6740 10 7 3.5530 -2.0172 5.8021 11 6 3.2452 -0.7340 5.8884 12 7 3.3894 -0.0693 7.1102 13 6 3.8249 -0.6186 8.2738 14 6 3.8226 0.3557 9.2124 15 6 3.3641 1.5333 8.6112 16 7 3.1047 1.2805 7.3541 17 6 2.7855 -0.0376 4.7778 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3396 -0.4639 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3782 0.2983 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4362 -0.9304 32 1 -0.3634 -1.0240 0.0874 33 1 2.2491 -1.6318 1.1524 34 1 2.8839 -2.6336 2.6061 35 1 3.6967 -3.7365 4.6486 36 1 4.1224 -1.6462 8.4219 37 1 4.1176 0.2430 10.2452 38 1 3.2447 2.4882 9.1015 39 1 2.5396 1.0114 4.8512 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970402345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = 128.812174 kcal Electronic energy + Delta-G solvation = -28118.842740 eV Core-core repulsion = 24139.808862 eV Total energy + Delta-G solvation = -3979.033878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62181 -41.62713 -40.61860 -39.66358 -36.37692 -34.93902 -34.19844 -33.81822 -31.94325 -31.26327 -30.40438 -29.40235 -26.73051 -26.06616 -25.60647 -25.06065 -23.36034 -22.48432 -21.78634 -21.49056 -20.88864 -19.59176 -18.77513 -18.32282 -17.64793 -16.95234 -16.85297 -16.73436 -16.62559 -16.21131 -15.93969 -15.82614 -15.42827 -15.12366 -14.96517 -14.83119 -14.55732 -14.45363 -14.12180 -13.70843 -13.49272 -13.24059 -13.19594 -13.06349 -13.03676 -12.71141 -12.42754 -12.08902 -11.88887 -11.86412 -11.64748 -11.58425 -11.43934 -11.14627 -11.03447 -10.86964 -10.81867 -10.26012 -10.17685 -9.37005 -8.95428 -7.94672 -5.27103 -0.63554 -0.33531 0.95831 1.05122 1.45568 1.47125 1.56749 1.75379 1.82073 1.87628 2.46274 2.67649 3.17066 3.28841 3.32840 3.41223 3.43405 3.68053 3.77084 3.84840 3.96094 4.04811 4.08480 4.24092 4.38992 4.43721 4.53920 4.58056 4.65443 4.72559 4.77885 4.80428 4.85830 4.87373 4.94386 5.02639 5.05763 5.20921 5.26406 5.28802 5.42218 5.49566 5.57034 5.61902 5.89676 5.99594 6.30421 6.42807 6.74757 6.88309 7.06692 7.57717 8.58728 9.24512 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.001936 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.582972 B =14456.210765 C =14776.233241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.061 0.939 4 N -0.690 5.690 5 C 0.557 3.443 6 O -0.572 6.572 7 C -0.068 4.068 8 C -0.138 4.138 9 C 0.143 3.857 10 N -0.499 5.499 11 C 0.353 3.647 12 N -0.345 5.345 13 C 0.065 3.935 14 C -0.258 4.258 15 C 0.065 3.935 16 N -0.332 5.332 17 C -0.132 4.132 18 C -0.111 4.111 19 C 0.125 3.875 20 N -0.642 5.642 21 C -0.231 4.231 22 H 0.088 0.912 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.981 3.019 26 H -0.290 1.290 27 H -0.263 1.263 28 H -0.293 1.293 29 C 0.169 3.831 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.187 0.813 35 H 0.222 0.778 36 H 0.202 0.798 37 H 0.189 0.811 38 H 0.224 0.776 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.249 0.751 44 H 0.008 0.992 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 -9.961 28.779 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.079 0.921 4 N -0.342 5.342 5 C 0.343 3.657 6 O -0.451 6.451 7 C -0.080 4.080 8 C -0.158 4.158 9 C -0.015 4.015 10 N -0.213 5.213 11 C 0.126 3.874 12 N -0.123 5.123 13 C -0.075 4.075 14 C -0.286 4.286 15 C -0.124 4.124 16 N -0.151 5.151 17 C -0.156 4.156 18 C -0.131 4.131 19 C 0.000 4.000 20 N -0.367 5.367 21 C -0.359 4.359 22 H 0.106 0.894 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.218 1.218 27 H -0.187 1.187 28 H -0.220 1.220 29 C 0.042 3.958 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.257 0.743 34 H 0.204 0.796 35 H 0.238 0.762 36 H 0.219 0.781 37 H 0.206 0.794 38 H 0.240 0.760 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.228 -9.127 28.012 29.462 hybrid contribution 0.418 0.568 -1.156 1.354 sum 0.190 -8.560 26.856 28.188 Atomic orbital electron populations 1.22059 0.93689 1.03307 1.02071 1.20763 0.94942 0.95904 0.82488 0.92069 1.45741 1.65535 1.14791 1.08132 1.18353 0.77606 0.86047 0.83671 1.90791 1.51539 1.17391 1.85405 1.20178 0.99717 0.95481 0.92608 1.22793 0.97841 0.92503 1.02694 1.23357 0.92020 1.01394 0.84684 1.66863 1.17699 1.05447 1.31280 1.17634 0.97068 0.89070 0.83596 1.45938 1.51591 1.07911 1.06878 1.23451 0.97830 1.01845 0.84353 1.22116 1.12181 0.91612 1.02662 1.24874 0.95390 1.01753 0.90344 1.77550 1.25606 0.91768 1.20158 1.21526 1.00730 1.01919 0.91426 1.23357 0.96368 1.00594 0.92761 1.22508 0.94758 0.98725 0.84053 1.46079 1.20061 1.69494 1.01115 1.19378 1.05320 1.27340 0.83841 0.89418 1.25718 0.99729 0.99620 1.01154 1.70033 1.27636 1.37562 1.25132 0.85029 0.77105 0.78178 0.78816 1.21757 1.18689 1.21956 1.21906 0.88781 0.93457 0.91624 0.93178 0.91567 0.90064 0.74308 0.79580 0.76175 0.78087 0.79357 0.75958 0.85030 0.86359 0.91655 0.95771 0.94210 0.97403 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.47 71.98 0.68 -3.21 16 2 C 0.16 4.65 2.34 44.99 0.11 4.75 16 3 H 0.06 2.15 7.43 -2.39 -0.02 2.14 16 4 N -0.69 -15.21 4.92 -445.12 -2.19 -17.40 16 5 C 0.56 14.92 7.76 86.88 0.67 15.60 16 6 O -0.57 -20.85 16.10 -3.74 -0.06 -20.91 16 7 C -0.07 -1.47 5.91 -19.90 -0.12 -1.59 16 8 C -0.14 -1.65 9.61 22.64 0.22 -1.43 16 9 C 0.14 1.54 11.17 84.65 0.95 2.49 16 10 N -0.50 -8.83 9.83 -192.95 -1.90 -10.73 16 11 C 0.35 8.18 7.55 132.77 1.00 9.19 16 12 N -0.34 -7.99 3.81 -192.26 -0.73 -8.72 16 13 C 0.07 1.08 11.10 83.39 0.93 2.01 16 14 C -0.26 -3.36 10.80 22.00 0.24 -3.12 16 15 C 0.06 1.04 12.02 85.26 1.02 2.07 16 16 N -0.33 -8.16 11.83 -56.98 -0.67 -8.84 16 17 C -0.13 -3.41 9.27 22.76 0.21 -3.20 16 18 C -0.11 -3.58 3.52 -10.37 -0.04 -3.62 16 19 C 0.12 4.69 8.14 83.17 0.68 5.37 16 20 N -0.64 -32.40 3.76 -737.97 -2.78 -35.18 16 21 C -0.23 -12.82 10.73 84.03 0.90 -11.92 16 22 H 0.09 4.61 7.84 -2.91 -0.02 4.58 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.96 -58.10 11.80 21.65 0.26 -57.84 16 25 Si 0.98 45.37 29.56 68.60 2.03 47.40 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 29 C 0.17 7.81 6.79 83.26 0.57 8.38 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.42 5.92 6.74 -92.71 -0.62 5.29 16 34 H 0.19 0.77 6.53 -2.91 -0.02 0.75 16 35 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.20 2.27 8.05 -2.91 -0.02 2.25 16 37 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.13 4.08 7.37 -2.91 -0.02 4.06 16 40 H 0.12 3.34 8.14 -2.39 -0.02 3.33 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.02 0.97 8.11 -2.38 -0.02 0.95 16 43 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 44 H 0.01 0.41 8.00 -2.38 -0.02 0.39 16 45 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 Total: -1.00 -83.51 385.43 2.83 -80.68 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.40 Total: 13.26 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 8.48 Total: 18.28 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.02 Total: -138.71 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -83.51 2.83 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970402345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.491 kcal (2) G-P(sol) polarization free energy of solvation -83.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds