Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 N 1.46499 * 109.47171 * 240.00095 * 2 1 3 5 5 C 1.34781 * 120.00216 * 85.00326 * 4 2 1 6 6 O 1.21519 * 119.99271 * 359.97438 * 5 4 2 7 7 C 1.48178 * 120.00380 * 180.02562 * 5 4 2 8 8 C 1.39125 * 119.69138 * 179.72542 * 7 5 4 9 9 C 1.39287 * 118.96987 * 179.79191 * 8 7 5 10 10 N 1.39939 * 120.81936 * 180.21624 * 9 8 7 11 11 C 1.35827 * 126.09986 * 184.96680 * 10 9 8 12 12 C 1.35293 * 107.61718 * 179.90049 * 11 10 9 13 13 C 1.39946 * 107.96512 * 0.37329 * 12 11 10 14 14 N 1.30830 * 108.36593 * 359.76760 * 13 12 11 15 15 C 1.39278 * 118.35813 * 0.47705 * 9 8 7 16 16 C 1.38344 * 119.27687 * 359.74157 * 15 9 8 17 17 N 1.31594 * 120.97765 * 0.02606 * 16 15 9 18 18 C 1.53001 * 109.47155 * 120.00552 * 2 1 3 19 19 C 1.53955 * 113.73896 * 281.99555 * 18 2 1 20 20 N 1.47816 * 86.03640 * 222.08348 * 19 18 2 21 21 C 1.36934 * 134.45354 * 204.64801 * 20 19 18 22 22 H 1.08001 * 119.99583 * 179.87061 * 21 20 19 23 23 C 1.38812 * 120.00072 * 359.86186 * 21 20 19 24 24 N 1.31615 * 120.00178 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99598 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47442 * 60.00150 * 25 23 21 27 27 H 1.48503 * 109.47030 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47282 * 299.99671 * 25 23 21 29 29 C 1.47586 * 91.04989 * 24.55023 * 20 19 18 30 30 H 1.08998 * 109.47098 * 55.80991 * 1 2 3 31 31 H 1.09000 * 109.47575 * 295.80834 * 1 2 3 32 32 H 1.09008 * 109.47315 * 175.80448 * 1 2 3 33 33 H 0.97004 * 120.00234 * 264.99973 * 4 2 1 34 34 H 1.07997 * 120.51537 * 359.97438 * 8 7 5 35 35 H 1.07993 * 126.19415 * 0.04888 * 11 10 9 36 36 H 1.07993 * 126.01690 * 180.13865 * 12 11 10 37 37 H 1.08003 * 125.81735 * 179.74755 * 13 12 11 38 38 H 1.08000 * 120.36588 * 179.72979 * 15 9 8 39 39 H 1.08001 * 119.51572 * 180.02562 * 16 15 9 40 40 H 1.08997 * 112.94525 * 53.58733 * 18 2 1 41 41 H 1.09001 * 113.76698 * 336.35106 * 19 18 2 42 42 H 1.09001 * 113.76676 * 107.74455 * 19 18 2 43 43 H 0.96991 * 120.00127 * 180.02562 * 24 23 21 44 44 H 1.09003 * 113.76558 * 221.14959 * 29 20 19 45 45 H 1.08999 * 113.87180 * 89.76821 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8577 1.1607 -2.4117 7 6 2.6405 -0.7168 -3.5672 8 6 2.7655 -0.0179 -4.7636 9 6 3.2349 -0.6883 -5.8907 10 7 3.3800 -0.0219 -7.1127 11 6 3.7353 -0.5875 -8.2954 12 6 3.7597 0.3931 -9.2272 13 6 3.4182 1.5954 -8.5976 14 7 3.1909 1.3485 -7.3331 15 6 3.5511 -2.0396 -5.7728 16 6 3.3955 -2.6666 -4.5495 17 7 2.9541 -2.0054 -3.5008 18 6 2.0399 -0.7214 1.2492 19 6 1.9704 0.1314 2.5291 20 7 3.3067 -0.4165 2.8438 21 6 4.0150 -0.6125 3.9992 22 1 5.0034 -1.0460 3.9597 23 6 3.4627 -0.2539 5.2212 24 7 2.2581 0.2740 5.2694 25 14 4.4294 -0.5208 6.7972 26 1 5.6974 0.2497 6.7367 27 1 3.6238 -0.0590 7.9562 28 1 4.7350 -1.9657 6.9519 29 6 3.5697 -0.6694 1.4138 30 1 -0.3633 0.5775 -0.8500 31 1 -0.3634 0.4474 0.9251 32 1 -0.3634 -1.0250 -0.0752 33 1 2.2490 -1.6318 -1.1527 34 1 2.5054 1.0290 -4.8169 35 1 3.9558 -1.6314 -8.4623 36 1 4.0039 0.2704 -10.2720 37 1 3.3536 2.5624 -9.0744 38 1 3.9136 -2.5920 -6.6271 39 1 3.6399 -3.7142 -4.4536 40 1 1.6199 -1.7205 1.3641 41 1 1.9687 1.2052 2.3420 42 1 1.1911 -0.1819 3.2239 43 1 1.8724 0.5249 6.1232 44 1 4.0650 -1.6208 1.2198 45 1 4.0391 0.1676 0.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970409587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 145.789967 kcal Electronic energy + Delta-G solvation = -28126.061357 eV Core-core repulsion = 24147.763691 eV Total energy + Delta-G solvation = -3978.297666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06129 -40.71526 -39.31079 -37.92198 -35.00942 -34.68061 -32.27736 -31.97280 -31.01173 -30.29544 -30.07534 -27.43905 -25.51089 -24.68304 -24.40725 -23.83636 -22.38726 -21.36803 -21.06043 -20.29862 -19.44794 -18.60819 -17.33208 -16.85886 -16.43338 -16.33199 -15.91820 -15.62396 -15.38900 -15.07978 -14.73527 -14.53155 -14.28011 -14.05055 -13.93011 -13.74441 -13.50812 -13.30775 -13.08140 -12.50523 -12.26223 -12.02698 -11.56582 -11.40849 -11.36407 -11.28306 -11.18485 -10.84748 -10.67371 -10.43870 -10.31913 -10.06572 -9.80954 -9.78429 -9.71449 -9.66562 -9.37738 -8.93753 -8.82706 -8.74847 -6.83313 -5.72891 -3.04682 0.06430 0.41850 1.61675 1.73809 2.26872 2.63501 3.05340 3.42256 3.46119 3.47514 3.56737 3.81047 3.94342 4.07419 4.34300 4.38176 4.48809 4.58010 4.79499 4.93953 5.06647 5.09932 5.16281 5.22358 5.32206 5.39558 5.44372 5.52562 5.58283 5.69345 5.85587 5.94271 6.04700 6.05997 6.12027 6.30659 6.41329 6.50156 6.50402 6.60904 6.67396 6.83106 7.06158 7.26410 7.27266 7.40934 7.59576 7.68683 8.02203 8.24605 9.08722 9.74852 10.64644 11.44437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.001942 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.949960 B =14417.343843 C =14683.865852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.693 5.693 5 C 0.567 3.433 6 O -0.530 6.530 7 C 0.114 3.886 8 C -0.118 4.118 9 C 0.202 3.798 10 N -0.331 5.331 11 C 0.053 3.947 12 C -0.254 4.254 13 C 0.060 3.940 14 N -0.279 5.279 15 C -0.182 4.182 16 C 0.130 3.870 17 N -0.464 5.464 18 C -0.146 4.146 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.194 0.806 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.090 0.910 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -6.004 -30.739 31.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.343 5.343 5 C 0.350 3.650 6 O -0.407 6.407 7 C -0.025 4.025 8 C -0.141 4.141 9 C 0.100 3.900 10 N -0.108 5.108 11 C -0.087 4.087 12 C -0.282 4.282 13 C -0.128 4.128 14 N -0.097 5.097 15 C -0.205 4.205 16 C -0.029 4.029 17 N -0.176 5.176 18 C -0.166 4.166 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.176 0.824 37 H 0.210 0.790 38 H 0.164 0.836 39 H 0.192 0.808 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.408 -5.085 -28.370 28.825 hybrid contribution 1.124 -0.426 -0.936 1.523 sum 0.716 -5.511 -29.306 29.828 Atomic orbital electron populations 1.22117 0.95200 1.01843 1.02512 1.21225 0.93992 0.97546 0.82871 0.89255 1.45992 1.64664 1.14740 1.08895 1.17730 0.78515 0.86101 0.82647 1.90812 1.50422 1.14926 1.84502 1.21231 0.97423 0.90001 0.93815 1.21846 0.98714 1.03130 0.90361 1.17650 0.97472 0.91150 0.83684 1.45969 1.52590 1.06406 1.05807 1.22830 1.00503 1.00567 0.84832 1.21692 1.13285 0.91978 1.01259 1.24225 0.97471 1.00186 0.90928 1.77601 1.23104 0.90526 1.18444 1.22025 1.04613 0.92628 1.01277 1.22701 0.93412 1.00381 0.86448 1.67637 1.10231 1.07684 1.32048 1.23860 0.97641 1.00820 0.94328 1.22238 0.89629 0.93908 0.89211 1.45977 1.16194 1.72033 0.99629 1.18976 0.98339 1.34860 0.82817 0.90386 1.24776 0.97067 1.01214 0.97466 1.69792 1.15206 1.47434 1.24492 0.86204 0.78870 0.77804 0.82900 1.21247 1.21559 1.21127 1.22533 0.93093 0.97725 0.86713 0.92763 0.90843 0.92646 0.75435 0.82021 0.80166 0.82448 0.78963 0.83604 0.80840 0.89184 0.95389 0.90652 0.93599 0.94047 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.46 37.15 0.35 -1.95 16 2 C 0.15 2.37 2.29 -67.93 -0.16 2.22 16 3 H 0.09 1.63 7.49 -51.93 -0.39 1.24 16 4 N -0.69 -9.95 4.94 -54.65 -0.27 -10.22 16 5 C 0.57 8.64 7.78 -12.18 -0.09 8.54 16 6 O -0.53 -9.66 15.98 5.35 0.09 -9.57 16 7 C 0.11 1.45 6.75 -83.04 -0.56 0.89 16 8 C -0.12 -1.44 9.26 -38.86 -0.36 -1.80 16 9 C 0.20 2.00 6.72 -83.38 -0.56 1.44 16 10 N -0.33 -3.20 3.81 -10.41 -0.04 -3.24 16 11 C 0.05 0.34 10.85 -16.83 -0.18 0.16 16 12 C -0.25 -1.49 10.80 -39.99 -0.43 -1.92 16 13 C 0.06 0.45 12.02 -17.34 -0.21 0.25 16 14 N -0.28 -3.07 11.98 30.64 0.37 -2.70 16 15 C -0.18 -1.23 9.54 -39.16 -0.37 -1.60 16 16 C 0.13 0.96 11.17 -17.61 -0.20 0.76 16 17 N -0.46 -5.00 9.54 -9.86 -0.09 -5.09 16 18 C -0.15 -2.69 3.35 -89.69 -0.30 -2.99 16 19 C 0.18 4.14 6.90 -2.83 -0.02 4.12 16 20 N -0.61 -16.00 3.70 -177.65 -0.66 -16.66 16 21 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.63 11.39 55.49 0.63 -27.00 16 25 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 29 C 0.13 2.62 8.38 -2.96 -0.02 2.59 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.07 7.99 -51.93 -0.42 0.66 16 32 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.41 5.28 7.93 -40.82 -0.32 4.95 16 34 H 0.16 2.23 7.39 -52.49 -0.39 1.84 16 35 H 0.18 0.44 7.16 -52.49 -0.38 0.06 16 36 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.19 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.15 0.45 6.90 -52.49 -0.36 0.09 16 39 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.08 1.94 7.16 -51.93 -0.37 1.56 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -36.08 384.70 -8.55 -44.62 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.97 Total: 2.81 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -3.37 Total: 3.82 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.06 Total: -64.91 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.08 -8.55 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970409587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.414 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds