Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 N 1.46499 * 109.47171 * 240.00095 * 2 1 3 5 5 C 1.34781 * 120.00216 * 85.00326 * 4 2 1 6 6 O 1.21519 * 119.99271 * 359.97438 * 5 4 2 7 7 C 1.48178 * 120.00380 * 180.02562 * 5 4 2 8 8 C 1.39125 * 119.69138 * 179.72542 * 7 5 4 9 9 C 1.39287 * 118.96987 * 179.79191 * 8 7 5 10 10 N 1.39939 * 120.81936 * 180.21624 * 9 8 7 11 11 C 1.35827 * 126.09986 * 184.96680 * 10 9 8 12 12 C 1.35293 * 107.61718 * 179.90049 * 11 10 9 13 13 C 1.39946 * 107.96512 * 0.37329 * 12 11 10 14 14 N 1.30830 * 108.36593 * 359.76760 * 13 12 11 15 15 C 1.39278 * 118.35813 * 0.47705 * 9 8 7 16 16 C 1.38344 * 119.27687 * 359.74157 * 15 9 8 17 17 N 1.31594 * 120.97765 * 0.02606 * 16 15 9 18 18 C 1.53001 * 109.47155 * 120.00552 * 2 1 3 19 19 C 1.53955 * 113.73896 * 281.99555 * 18 2 1 20 20 N 1.47816 * 86.03640 * 222.08348 * 19 18 2 21 21 C 1.36934 * 134.45354 * 204.64801 * 20 19 18 22 22 H 1.08001 * 119.99583 * 179.87061 * 21 20 19 23 23 C 1.38812 * 120.00072 * 359.86186 * 21 20 19 24 24 N 1.31615 * 120.00178 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99598 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47442 * 60.00150 * 25 23 21 27 27 H 1.48503 * 109.47030 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47282 * 299.99671 * 25 23 21 29 29 C 1.47586 * 91.04989 * 24.55023 * 20 19 18 30 30 H 1.08998 * 109.47098 * 55.80991 * 1 2 3 31 31 H 1.09000 * 109.47575 * 295.80834 * 1 2 3 32 32 H 1.09008 * 109.47315 * 175.80448 * 1 2 3 33 33 H 0.97004 * 120.00234 * 264.99973 * 4 2 1 34 34 H 1.07997 * 120.51537 * 359.97438 * 8 7 5 35 35 H 1.07993 * 126.19415 * 0.04888 * 11 10 9 36 36 H 1.07993 * 126.01690 * 180.13865 * 12 11 10 37 37 H 1.08003 * 125.81735 * 179.74755 * 13 12 11 38 38 H 1.08000 * 120.36588 * 179.72979 * 15 9 8 39 39 H 1.08001 * 119.51572 * 180.02562 * 16 15 9 40 40 H 1.08997 * 112.94525 * 53.58733 * 18 2 1 41 41 H 1.09001 * 113.76698 * 336.35106 * 19 18 2 42 42 H 1.09001 * 113.76676 * 107.74455 * 19 18 2 43 43 H 0.96991 * 120.00127 * 180.02562 * 24 23 21 44 44 H 1.09003 * 113.76558 * 221.14959 * 29 20 19 45 45 H 1.08999 * 113.87180 * 89.76821 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8577 1.1607 -2.4117 7 6 2.6405 -0.7168 -3.5672 8 6 2.7655 -0.0179 -4.7636 9 6 3.2349 -0.6883 -5.8907 10 7 3.3800 -0.0219 -7.1127 11 6 3.7353 -0.5875 -8.2954 12 6 3.7597 0.3931 -9.2272 13 6 3.4182 1.5954 -8.5976 14 7 3.1909 1.3485 -7.3331 15 6 3.5511 -2.0396 -5.7728 16 6 3.3955 -2.6666 -4.5495 17 7 2.9541 -2.0054 -3.5008 18 6 2.0399 -0.7214 1.2492 19 6 1.9704 0.1314 2.5291 20 7 3.3067 -0.4165 2.8438 21 6 4.0150 -0.6125 3.9992 22 1 5.0034 -1.0460 3.9597 23 6 3.4627 -0.2539 5.2212 24 7 2.2581 0.2740 5.2694 25 14 4.4294 -0.5208 6.7972 26 1 5.6974 0.2497 6.7367 27 1 3.6238 -0.0590 7.9562 28 1 4.7350 -1.9657 6.9519 29 6 3.5697 -0.6694 1.4138 30 1 -0.3633 0.5775 -0.8500 31 1 -0.3634 0.4474 0.9251 32 1 -0.3634 -1.0250 -0.0752 33 1 2.2490 -1.6318 -1.1527 34 1 2.5054 1.0290 -4.8169 35 1 3.9558 -1.6314 -8.4623 36 1 4.0039 0.2704 -10.2720 37 1 3.3536 2.5624 -9.0744 38 1 3.9136 -2.5920 -6.6271 39 1 3.6399 -3.7142 -4.4536 40 1 1.6199 -1.7205 1.3641 41 1 1.9687 1.2052 2.3420 42 1 1.1911 -0.1819 3.2239 43 1 1.8724 0.5249 6.1232 44 1 4.0650 -1.6208 1.2198 45 1 4.0391 0.1676 0.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970409587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = 120.726859 kcal Electronic energy + Delta-G solvation = -28127.148175 eV Core-core repulsion = 24147.763691 eV Total energy + Delta-G solvation = -3979.384484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.63976 -41.60652 -40.50028 -39.47985 -36.31396 -35.50227 -34.15107 -32.93560 -31.91642 -31.16914 -30.79479 -29.33884 -26.78504 -26.11689 -25.54395 -25.04597 -23.37834 -22.39944 -21.82144 -21.41626 -20.81498 -19.58025 -18.78277 -18.22358 -17.59059 -17.00118 -16.91616 -16.70741 -16.47913 -16.21619 -16.01085 -15.81519 -15.46265 -15.09338 -14.95116 -14.83693 -14.51087 -14.48046 -14.07774 -13.71591 -13.41803 -13.28004 -13.17075 -13.09819 -12.95898 -12.66640 -12.42885 -12.08026 -12.05878 -11.83623 -11.81743 -11.64276 -11.37622 -11.21208 -10.86122 -10.77883 -10.49263 -10.37743 -10.08705 -9.50873 -8.92863 -7.90420 -5.24228 -0.64338 -0.29670 1.03616 1.18787 1.44953 1.48867 1.54993 1.66539 1.80927 1.94992 2.47410 2.72473 3.02121 3.26343 3.29191 3.37813 3.53551 3.69943 3.77643 3.88754 3.94778 4.02420 4.09361 4.24931 4.37056 4.42134 4.54154 4.54808 4.59478 4.69896 4.75760 4.81026 4.84988 4.87629 4.93511 5.01638 5.05613 5.23824 5.28289 5.31333 5.45446 5.53215 5.58683 5.63605 5.93494 5.99721 6.36350 6.52733 6.70558 6.91718 7.09659 7.60269 8.56272 9.26481 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.001942 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.949960 B =14417.343843 C =14683.865852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.064 0.936 4 N -0.684 5.684 5 C 0.565 3.435 6 O -0.572 6.572 7 C 0.095 3.905 8 C -0.138 4.138 9 C 0.192 3.808 10 N -0.348 5.348 11 C 0.054 3.946 12 C -0.256 4.256 13 C 0.057 3.943 14 N -0.344 5.344 15 C -0.155 4.155 16 C 0.135 3.865 17 N -0.476 5.476 18 C -0.108 4.108 19 C 0.172 3.828 20 N -0.643 5.643 21 C -0.238 4.238 22 H 0.083 0.917 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.981 3.019 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.273 1.273 29 C 0.127 3.873 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.420 0.580 34 H 0.130 0.870 35 H 0.225 0.775 36 H 0.189 0.811 37 H 0.215 0.785 38 H 0.195 0.805 39 H 0.220 0.780 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.050 0.950 43 H 0.249 0.751 44 H 0.061 0.939 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -9.427 -33.531 34.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.082 0.918 4 N -0.334 5.334 5 C 0.350 3.650 6 O -0.451 6.451 7 C -0.042 4.042 8 C -0.161 4.161 9 C 0.090 3.910 10 N -0.125 5.125 11 C -0.085 4.085 12 C -0.283 4.283 13 C -0.130 4.130 14 N -0.162 5.162 15 C -0.177 4.177 16 C -0.025 4.025 17 N -0.189 5.189 18 C -0.128 4.128 19 C 0.046 3.954 20 N -0.369 5.369 21 C -0.367 4.367 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.809 3.191 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.198 1.198 29 C 0.002 3.998 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.258 0.742 34 H 0.148 0.852 35 H 0.241 0.759 36 H 0.206 0.794 37 H 0.232 0.768 38 H 0.212 0.788 39 H 0.236 0.764 40 H 0.126 0.874 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.031 -8.533 -31.208 32.370 hybrid contribution 0.751 0.621 -0.279 1.014 sum 1.783 -7.912 -31.487 32.515 Atomic orbital electron populations 1.22047 0.93688 1.03051 1.02191 1.20895 0.95051 0.95986 0.82713 0.91816 1.45784 1.64513 1.14999 1.08103 1.18158 0.77637 0.85711 0.83476 1.90780 1.52209 1.16824 1.85278 1.20678 0.99847 0.91104 0.92550 1.21630 1.00648 1.02081 0.91782 1.17893 0.97389 0.92411 0.83277 1.46088 1.53622 1.06243 1.06536 1.23654 0.98878 1.02573 0.83385 1.22145 1.12505 0.90988 1.02669 1.24818 0.95917 1.02035 0.90275 1.77575 1.25850 0.92205 1.20531 1.22541 1.01664 0.90946 1.02587 1.23521 0.91418 1.01876 0.85637 1.67616 1.10983 1.06470 1.33847 1.23457 0.95990 1.00505 0.92866 1.22137 0.88256 0.93705 0.91291 1.46404 1.17160 1.72286 1.01070 1.19400 0.98746 1.34375 0.84132 0.89933 1.25661 0.98175 1.01538 1.00747 1.69988 1.16733 1.48704 1.24780 0.85122 0.77361 0.78149 0.78509 1.20650 1.21935 1.19847 1.22657 0.94891 0.98331 0.83913 0.93020 0.91248 0.90619 0.74227 0.85154 0.75880 0.79386 0.76808 0.78799 0.76404 0.87442 0.97035 0.93206 0.94179 0.92063 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.46 71.98 0.68 -3.74 16 2 C 0.16 5.19 2.29 44.99 0.10 5.29 16 3 H 0.06 2.45 7.49 -2.39 -0.02 2.43 16 4 N -0.68 -19.66 4.94 -445.09 -2.20 -21.86 16 5 C 0.56 17.95 7.78 86.88 0.68 18.63 16 6 O -0.57 -22.41 15.98 -3.77 -0.06 -22.48 16 7 C 0.10 2.47 6.75 41.86 0.28 2.75 16 8 C -0.14 -3.56 9.26 22.74 0.21 -3.35 16 9 C 0.19 3.56 6.72 38.35 0.26 3.82 16 10 N -0.35 -6.31 3.81 -186.86 -0.71 -7.02 16 11 C 0.05 0.50 10.85 83.39 0.91 1.41 16 12 C -0.26 -2.29 10.80 22.00 0.24 -2.05 16 13 C 0.06 0.82 12.02 85.26 1.02 1.84 16 14 N -0.34 -7.76 11.98 -56.97 -0.68 -8.44 16 15 C -0.15 -1.45 9.54 22.55 0.21 -1.23 16 16 C 0.14 1.44 11.17 84.75 0.95 2.39 16 17 N -0.48 -9.36 9.54 -185.12 -1.77 -11.13 16 18 C -0.11 -3.99 3.35 -10.13 -0.03 -4.02 16 19 C 0.17 8.38 6.90 86.44 0.60 8.98 16 20 N -0.64 -34.13 3.70 -715.97 -2.65 -36.78 16 21 C -0.24 -13.77 10.70 84.03 0.90 -12.87 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 24 N -0.95 -58.70 11.39 21.65 0.25 -58.45 16 25 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 C 0.13 5.28 8.38 86.49 0.72 6.00 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.07 7.99 -2.39 -0.02 2.05 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.42 10.32 7.93 -92.70 -0.74 9.58 16 34 H 0.13 4.10 7.39 -2.91 -0.02 4.08 16 35 H 0.22 -0.22 7.16 -2.91 -0.02 -0.24 16 36 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.19 -0.13 6.90 -2.91 -0.02 -0.15 16 39 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.01 0.61 8.04 -2.39 -0.02 0.59 16 42 H 0.05 2.67 7.16 -2.39 -0.02 2.65 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -84.58 384.70 2.69 -81.90 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.29 Total: 15.28 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 8.19 Total: 20.33 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -7.76 Total: -143.68 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -84.58 2.69 -81.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970409587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.625 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds