Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47498 * 2 1 4 4 N 1.46503 * 109.47090 * 120.00353 * 2 1 3 5 5 C 1.34779 * 119.99704 * 274.99579 * 4 2 1 6 6 O 1.21518 * 119.99924 * 0.02562 * 5 4 2 7 7 C 1.48163 * 119.99900 * 179.97438 * 5 4 2 8 8 C 1.39235 * 119.68734 * 179.97438 * 7 5 4 9 9 C 1.38711 * 119.19235 * 180.02562 * 8 7 5 10 10 C 1.38412 * 118.55538 * 359.97438 * 9 8 7 11 11 C 1.39264 * 119.29781 * 0.02562 * 10 9 8 12 12 N 1.39823 * 119.61746 * 179.97438 * 11 10 9 13 13 C 1.35842 * 126.10072 * 179.97438 * 12 11 10 14 14 C 1.35283 * 107.60899 * 179.72460 * 13 12 11 15 15 C 1.39956 * 107.96980 * 0.43199 * 14 13 12 16 16 N 1.30821 * 108.36748 * 359.55816 * 15 14 13 17 17 N 1.31977 * 120.76553 * 0.25434 * 11 10 9 18 18 C 1.53001 * 109.46862 * 239.99542 * 2 1 3 19 19 C 1.53947 * 113.74224 * 158.74097 * 18 2 1 20 20 N 1.47811 * 86.03966 * 222.08819 * 19 18 2 21 21 C 1.36933 * 134.45683 * 204.64201 * 20 19 18 22 22 H 1.07999 * 119.99982 * 179.86449 * 21 20 19 23 23 C 1.38811 * 120.00261 * 359.86958 * 21 20 19 24 24 N 1.31619 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00319 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46716 * 59.99930 * 25 23 21 27 27 H 1.48499 * 109.47290 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47209 * 300.00125 * 25 23 21 29 29 C 1.47589 * 91.05118 * 24.54794 * 20 19 18 30 30 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46884 * 299.99766 * 1 2 3 32 32 H 1.08994 * 109.47190 * 59.99772 * 1 2 3 33 33 H 0.96994 * 120.00164 * 94.99573 * 4 2 1 34 34 H 1.08002 * 120.39961 * 0.04328 * 8 7 5 35 35 H 1.08000 * 120.72175 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.34994 * 179.97438 * 10 9 8 37 37 H 1.07998 * 126.19920 * 359.95929 * 13 12 11 38 38 H 1.08003 * 126.01632 * 180.27180 * 14 13 12 39 39 H 1.08002 * 125.81889 * 179.83042 * 15 14 13 40 40 H 1.08997 * 112.94803 * 290.33566 * 18 2 1 41 41 H 1.09002 * 113.76822 * 336.35143 * 19 18 2 42 42 H 1.09000 * 113.76773 * 107.74732 * 19 18 2 43 43 H 0.97007 * 120.00025 * 180.02562 * 24 23 21 44 44 H 1.08991 * 113.77023 * 221.14803 * 29 20 19 45 45 H 1.09005 * 113.86643 * 89.76317 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8578 1.1606 2.4118 7 6 2.6405 -0.7169 3.5670 8 6 2.7715 -0.0159 4.7628 9 6 3.2348 -0.6800 5.8891 10 6 3.5511 -2.0232 5.7818 11 6 3.3966 -2.6639 4.5550 12 7 3.7146 -4.0205 4.4390 13 6 3.6141 -4.7726 3.3123 14 6 4.0222 -6.0255 3.6188 15 6 4.3738 -6.0458 4.9733 16 7 4.1938 -4.8465 5.4640 17 7 2.9586 -2.0041 3.4993 18 6 2.0400 -0.7214 -1.2492 19 6 3.4848 -0.3522 -1.6317 20 7 2.9978 -0.3178 -3.0269 21 6 3.5874 -0.4759 -4.2527 22 1 2.9927 -0.4039 -5.1513 23 6 4.9495 -0.7286 -4.3403 24 7 5.6742 -0.8168 -3.2451 25 14 5.7537 -0.9449 -6.0124 26 1 5.5655 0.2900 -6.8155 27 1 7.2053 -1.2023 -5.8340 28 1 5.1297 -2.0935 -6.7169 29 6 1.6213 -0.0473 -2.5685 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 2.5153 1.0321 4.8129 35 1 3.3464 -0.1602 6.8292 36 1 3.9147 -2.5684 6.6402 37 1 3.2740 -4.4313 2.3457 38 1 4.0663 -6.8633 2.9387 39 1 4.7365 -6.9041 5.5194 40 1 1.8528 -1.7949 -1.2262 41 1 3.8048 0.6189 -1.2541 42 1 4.2070 -1.1450 -1.4367 43 1 6.6261 -0.9931 -3.3063 44 1 0.8586 -0.5969 -3.1200 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970412017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 149.066747 kcal Electronic energy + Delta-G solvation = -28687.796492 eV Core-core repulsion = 24709.640918 eV Total energy + Delta-G solvation = -3978.155574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83784 -40.64814 -39.30948 -37.98256 -34.92178 -33.93188 -33.17389 -32.11515 -30.62522 -30.44632 -29.62772 -27.51751 -25.48812 -24.64741 -24.38483 -23.84814 -22.07532 -21.21728 -20.99242 -20.33407 -19.35262 -18.51246 -17.59159 -16.78784 -16.40219 -16.28251 -15.93071 -15.67229 -15.11261 -14.97500 -14.84623 -14.40012 -14.00101 -13.82448 -13.68149 -13.62618 -13.43906 -13.01586 -13.00229 -12.59693 -12.41544 -12.13528 -11.67075 -11.34859 -11.28707 -11.16962 -10.91034 -10.79632 -10.74935 -10.57550 -10.38496 -10.30868 -10.01807 -9.76012 -9.74178 -9.45853 -9.40332 -8.86794 -8.78341 -8.59358 -6.86453 -5.75137 -3.07548 0.20852 0.53345 1.72435 1.77442 2.50032 2.69428 3.07493 3.40274 3.44287 3.45700 3.59832 3.79828 4.09165 4.46110 4.53832 4.58791 4.63051 4.71591 4.91488 5.05208 5.13512 5.21789 5.26888 5.28439 5.40582 5.53551 5.57105 5.64656 5.68537 5.72033 5.79183 5.93912 5.98049 6.02003 6.22127 6.23667 6.34616 6.39607 6.56537 6.64377 6.74265 6.76998 6.95720 7.24506 7.37031 7.42915 7.56992 7.65190 7.99373 8.20607 9.05801 9.72329 10.61549 11.41743 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.002904 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.615365 B = 9640.443187 C =11394.285645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.693 5.693 5 C 0.571 3.429 6 O -0.531 6.531 7 C 0.121 3.879 8 C -0.126 4.126 9 C -0.057 4.057 10 C -0.146 4.146 11 C 0.372 3.628 12 N -0.328 5.328 13 C 0.084 3.916 14 C -0.265 4.265 15 C 0.066 3.934 16 N -0.289 5.289 17 N -0.482 5.482 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.131 3.869 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.186 0.814 38 H 0.158 0.842 39 H 0.193 0.807 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -6.654 20.641 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.342 5.342 5 C 0.354 3.646 6 O -0.408 6.408 7 C -0.019 4.019 8 C -0.148 4.148 9 C -0.083 4.083 10 C -0.169 4.169 11 C 0.143 3.857 12 N -0.106 5.106 13 C -0.057 4.057 14 C -0.293 4.293 15 C -0.123 4.123 16 N -0.108 5.108 17 N -0.198 5.198 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.203 0.797 38 H 0.176 0.824 39 H 0.210 0.790 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.062 -5.467 20.608 22.460 hybrid contribution 0.803 -0.726 -0.953 1.442 sum -6.259 -6.193 19.655 21.537 Atomic orbital electron populations 1.22132 0.95408 1.01898 1.02212 1.21213 0.93663 0.97663 0.83120 0.89195 1.45967 1.64635 1.14687 1.08958 1.17716 0.78288 0.86037 0.82553 1.90795 1.50723 1.14752 1.84515 1.21000 0.97917 0.87974 0.94978 1.22181 0.98248 1.02551 0.91772 1.21562 0.94377 0.93102 0.99258 1.21809 1.01889 0.95595 0.97593 1.17551 0.95972 0.81928 0.90298 1.45773 1.50529 1.05873 1.08449 1.23030 0.98743 0.91213 0.92734 1.21713 1.12409 0.98186 0.96996 1.24168 0.97934 0.95405 0.94772 1.77418 1.20426 1.02044 1.10882 1.66665 1.13165 1.09463 1.30463 1.23831 1.00981 0.99721 0.92125 1.22295 0.91358 0.98505 0.83293 1.45981 1.03271 1.82598 1.01991 1.18977 0.91445 1.41775 0.82961 0.90326 1.24778 0.96044 1.02362 0.97235 1.69811 1.06122 1.55079 1.25809 0.86211 0.78435 0.77985 0.83193 1.21216 1.21571 1.21080 1.22486 0.89681 0.96616 0.90789 0.92637 0.92719 0.91209 0.75562 0.82554 0.82981 0.83005 0.79728 0.82437 0.78999 0.89318 0.95649 0.91026 0.93638 0.93729 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.31 37.16 0.35 -1.72 16 2 C 0.15 2.27 2.38 -67.93 -0.16 2.11 16 3 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 4 N -0.69 -9.91 5.07 -54.64 -0.28 -10.19 16 5 C 0.57 8.44 7.78 -12.18 -0.09 8.35 16 6 O -0.53 -9.08 15.98 5.35 0.09 -8.99 16 7 C 0.12 1.54 6.75 -83.02 -0.56 0.98 16 8 C -0.13 -1.29 9.63 -39.04 -0.38 -1.67 16 9 C -0.06 -0.46 10.16 -39.34 -0.40 -0.86 16 10 C -0.15 -1.41 9.70 -39.14 -0.38 -1.79 16 11 C 0.37 4.46 7.55 -154.52 -1.17 3.29 16 12 N -0.33 -3.92 3.81 -12.09 -0.05 -3.96 16 13 C 0.08 0.90 11.10 -16.83 -0.19 0.71 16 14 C -0.26 -2.38 10.80 -39.99 -0.43 -2.81 16 15 C 0.07 0.58 12.02 -17.34 -0.21 0.37 16 16 N -0.29 -3.25 11.83 30.64 0.36 -2.89 16 17 N -0.48 -6.07 9.03 -8.85 -0.08 -6.15 16 18 C -0.15 -2.61 3.47 -89.69 -0.31 -2.92 16 19 C 0.17 4.00 7.08 -2.84 -0.02 3.97 16 20 N -0.61 -15.71 3.70 -177.67 -0.66 -16.37 16 21 C -0.22 -6.32 10.70 -15.06 -0.16 -6.49 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.51 11.39 55.49 0.63 -26.88 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.13 2.61 7.64 -2.96 -0.02 2.58 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 33 H 0.41 5.41 7.93 -40.82 -0.32 5.09 16 34 H 0.16 1.46 7.63 -52.49 -0.40 1.06 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 1.29 7.68 -52.49 -0.40 0.88 16 37 H 0.19 1.76 8.05 -52.49 -0.42 1.34 16 38 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 42 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -34.55 385.60 -9.46 -44.01 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.04 Total: 4.59 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.23 Total: 3.79 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.07 Total: -66.45 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.55 -9.46 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.078 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds