Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47498 * 2 1 4 4 N 1.46503 * 109.47090 * 120.00353 * 2 1 3 5 5 C 1.34779 * 119.99704 * 274.99579 * 4 2 1 6 6 O 1.21518 * 119.99924 * 0.02562 * 5 4 2 7 7 C 1.48163 * 119.99900 * 179.97438 * 5 4 2 8 8 C 1.39235 * 119.68734 * 179.97438 * 7 5 4 9 9 C 1.38711 * 119.19235 * 180.02562 * 8 7 5 10 10 C 1.38412 * 118.55538 * 359.97438 * 9 8 7 11 11 C 1.39264 * 119.29781 * 0.02562 * 10 9 8 12 12 N 1.39823 * 119.61746 * 179.97438 * 11 10 9 13 13 C 1.35842 * 126.10072 * 179.97438 * 12 11 10 14 14 C 1.35283 * 107.60899 * 179.72460 * 13 12 11 15 15 C 1.39956 * 107.96980 * 0.43199 * 14 13 12 16 16 N 1.30821 * 108.36748 * 359.55816 * 15 14 13 17 17 N 1.31977 * 120.76553 * 0.25434 * 11 10 9 18 18 C 1.53001 * 109.46862 * 239.99542 * 2 1 3 19 19 C 1.53947 * 113.74224 * 158.74097 * 18 2 1 20 20 N 1.47811 * 86.03966 * 222.08819 * 19 18 2 21 21 C 1.36933 * 134.45683 * 204.64201 * 20 19 18 22 22 H 1.07999 * 119.99982 * 179.86449 * 21 20 19 23 23 C 1.38811 * 120.00261 * 359.86958 * 21 20 19 24 24 N 1.31619 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00319 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46716 * 59.99930 * 25 23 21 27 27 H 1.48499 * 109.47290 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47209 * 300.00125 * 25 23 21 29 29 C 1.47589 * 91.05118 * 24.54794 * 20 19 18 30 30 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46884 * 299.99766 * 1 2 3 32 32 H 1.08994 * 109.47190 * 59.99772 * 1 2 3 33 33 H 0.96994 * 120.00164 * 94.99573 * 4 2 1 34 34 H 1.08002 * 120.39961 * 0.04328 * 8 7 5 35 35 H 1.08000 * 120.72175 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.34994 * 179.97438 * 10 9 8 37 37 H 1.07998 * 126.19920 * 359.95929 * 13 12 11 38 38 H 1.08003 * 126.01632 * 180.27180 * 14 13 12 39 39 H 1.08002 * 125.81889 * 179.83042 * 15 14 13 40 40 H 1.08997 * 112.94803 * 290.33566 * 18 2 1 41 41 H 1.09002 * 113.76822 * 336.35143 * 19 18 2 42 42 H 1.09000 * 113.76773 * 107.74732 * 19 18 2 43 43 H 0.97007 * 120.00025 * 180.02562 * 24 23 21 44 44 H 1.08991 * 113.77023 * 221.14803 * 29 20 19 45 45 H 1.09005 * 113.86643 * 89.76317 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8578 1.1606 2.4118 7 6 2.6405 -0.7169 3.5670 8 6 2.7715 -0.0159 4.7628 9 6 3.2348 -0.6800 5.8891 10 6 3.5511 -2.0232 5.7818 11 6 3.3966 -2.6639 4.5550 12 7 3.7146 -4.0205 4.4390 13 6 3.6141 -4.7726 3.3123 14 6 4.0222 -6.0255 3.6188 15 6 4.3738 -6.0458 4.9733 16 7 4.1938 -4.8465 5.4640 17 7 2.9586 -2.0041 3.4993 18 6 2.0400 -0.7214 -1.2492 19 6 3.4848 -0.3522 -1.6317 20 7 2.9978 -0.3178 -3.0269 21 6 3.5874 -0.4759 -4.2527 22 1 2.9927 -0.4039 -5.1513 23 6 4.9495 -0.7286 -4.3403 24 7 5.6742 -0.8168 -3.2451 25 14 5.7537 -0.9449 -6.0124 26 1 5.5655 0.2900 -6.8155 27 1 7.2053 -1.2023 -5.8340 28 1 5.1297 -2.0935 -6.7169 29 6 1.6213 -0.0473 -2.5685 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 2.5153 1.0321 4.8129 35 1 3.3464 -0.1602 6.8292 36 1 3.9147 -2.5684 6.6402 37 1 3.2740 -4.4313 2.3457 38 1 4.0663 -6.8633 2.9387 39 1 4.7365 -6.9041 5.5194 40 1 1.8528 -1.7949 -1.2262 41 1 3.8048 0.6189 -1.2541 42 1 4.2070 -1.1450 -1.4367 43 1 6.6261 -0.9931 -3.3063 44 1 0.8586 -0.5969 -3.1200 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970412017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 127.126911 kcal Electronic energy + Delta-G solvation = -28688.747875 eV Core-core repulsion = 24709.640918 eV Total energy + Delta-G solvation = -3979.106957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.60661 -41.59835 -40.50790 -39.49745 -36.29881 -34.72141 -34.32723 -33.81428 -31.71952 -31.37687 -30.48109 -29.35850 -26.81220 -26.05861 -25.48969 -25.13782 -23.29654 -22.12481 -21.99602 -21.44747 -20.75869 -19.47468 -18.76863 -18.61498 -17.52349 -17.14190 -16.92463 -16.78968 -16.64469 -16.10501 -15.93289 -15.73124 -15.45880 -14.88276 -14.79272 -14.65884 -14.43325 -14.27048 -14.07370 -13.69437 -13.43264 -13.30572 -13.26797 -13.09834 -12.90073 -12.69443 -12.58344 -12.05968 -11.91630 -11.75952 -11.66010 -11.56812 -11.48280 -11.24865 -11.10832 -10.87693 -10.78928 -10.26186 -10.09979 -9.38268 -8.92819 -7.90700 -5.24601 -0.62857 -0.25651 0.95607 1.01067 1.44380 1.48115 1.54209 1.66249 1.82345 1.98115 2.47092 2.69123 2.90273 3.29764 3.34720 3.38107 3.66552 3.80166 3.84052 3.87357 3.92356 4.06920 4.17981 4.27938 4.32785 4.46329 4.51524 4.57569 4.70746 4.73507 4.81449 4.85031 4.87950 4.95810 5.00721 5.04966 5.07677 5.24599 5.25968 5.32561 5.41819 5.53457 5.58573 5.64114 5.92599 5.96161 6.12315 6.45547 6.70982 6.90588 7.05816 7.60583 8.56246 9.25865 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.002904 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.615365 B = 9640.443187 C =11394.285645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.068 0.932 4 N -0.692 5.692 5 C 0.570 3.430 6 O -0.560 6.560 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.038 4.038 10 C -0.143 4.143 11 C 0.352 3.648 12 N -0.342 5.342 13 C 0.057 3.943 14 C -0.260 4.260 15 C 0.070 3.930 16 N -0.313 5.313 17 N -0.496 5.496 18 C -0.110 4.110 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.279 1.279 27 H -0.296 1.296 28 H -0.272 1.272 29 C 0.132 3.868 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.165 0.835 35 H 0.196 0.804 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.230 0.770 40 H 0.102 0.898 41 H 0.004 0.996 42 H 0.039 0.961 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -7.673 21.695 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.086 0.914 4 N -0.341 5.341 5 C 0.355 3.645 6 O -0.438 6.438 7 C -0.042 4.042 8 C -0.146 4.146 9 C -0.063 4.063 10 C -0.165 4.165 11 C 0.122 3.878 12 N -0.121 5.121 13 C -0.083 4.083 14 C -0.288 4.288 15 C -0.118 4.118 16 N -0.131 5.131 17 N -0.212 5.212 18 C -0.130 4.130 19 C 0.042 3.958 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.205 1.205 27 H -0.222 1.222 28 H -0.198 1.198 29 C 0.007 3.993 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.183 0.817 35 H 0.213 0.787 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.198 0.802 39 H 0.247 0.753 40 H 0.120 0.880 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.116 -6.492 21.656 24.021 hybrid contribution 1.121 -0.452 -1.217 1.716 sum -6.994 -6.945 20.439 22.691 Atomic orbital electron populations 1.22050 0.92855 1.03118 1.02673 1.20987 0.95419 0.96004 0.82420 0.91431 1.45915 1.64653 1.14856 1.08721 1.18030 0.77594 0.85773 0.83117 1.90766 1.52085 1.15881 1.85108 1.20786 1.00020 0.88477 0.94945 1.22386 0.97767 1.02934 0.91549 1.21997 0.92008 0.92322 1.00020 1.22085 1.01084 0.96267 0.97090 1.17900 0.96592 0.82362 0.90987 1.45926 1.51279 1.06012 1.08861 1.23311 0.99916 0.92171 0.92934 1.22073 1.11036 0.98082 0.97580 1.24851 0.96457 0.95621 0.94860 1.77374 1.21437 1.02961 1.11377 1.66525 1.13872 1.09527 1.31315 1.23445 0.96313 1.00471 0.92761 1.22163 0.93968 0.96370 0.83286 1.46410 1.05893 1.82881 1.01865 1.19433 0.91975 1.40639 0.84431 0.89639 1.25654 0.96782 1.02915 1.00819 1.70023 1.05798 1.56670 1.27904 0.85139 0.76853 0.78289 0.78986 1.20491 1.22177 1.19817 1.22679 0.87613 0.97665 0.91318 0.91011 0.92790 0.90215 0.74987 0.81736 0.78678 0.81686 0.79724 0.80193 0.75339 0.88004 0.97853 0.94301 0.94416 0.91573 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.31 71.98 0.67 -2.97 16 2 C 0.16 4.79 2.38 44.99 0.11 4.90 16 3 H 0.07 2.41 7.42 -2.39 -0.02 2.39 16 4 N -0.69 -20.13 5.07 -445.08 -2.26 -22.39 16 5 C 0.57 17.24 7.78 86.88 0.68 17.91 16 6 O -0.56 -19.50 15.98 -3.77 -0.06 -19.56 16 7 C 0.10 2.47 6.75 41.88 0.28 2.76 16 8 C -0.12 -2.43 9.63 22.62 0.22 -2.22 16 9 C -0.04 -0.52 10.16 22.42 0.23 -0.30 16 10 C -0.14 -2.56 9.70 22.56 0.22 -2.34 16 11 C 0.35 8.38 7.55 132.94 1.00 9.38 16 12 N -0.34 -8.11 3.81 -192.18 -0.73 -8.85 16 13 C 0.06 1.23 11.10 83.39 0.93 2.16 16 14 C -0.26 -4.35 10.80 22.00 0.24 -4.11 16 15 C 0.07 1.11 12.02 85.26 1.02 2.13 16 16 N -0.31 -6.72 11.83 -56.97 -0.67 -7.39 16 17 N -0.50 -12.75 9.03 -181.90 -1.64 -14.39 16 18 C -0.11 -3.91 3.47 -10.13 -0.04 -3.94 16 19 C 0.17 8.16 7.08 86.44 0.61 8.77 16 20 N -0.64 -33.45 3.70 -716.02 -2.65 -36.11 16 21 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 22 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.96 -58.99 11.39 21.65 0.25 -58.74 16 25 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 29 C 0.13 5.14 7.64 86.49 0.66 5.80 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.80 7.52 -2.39 -0.02 1.78 16 33 H 0.41 11.21 7.93 -92.71 -0.74 10.48 16 34 H 0.17 2.90 7.63 -2.91 -0.02 2.87 16 35 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.17 2.48 7.68 -2.91 -0.02 2.46 16 37 H 0.19 3.71 8.05 -2.91 -0.02 3.69 16 38 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.23 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 42 H 0.04 2.12 7.16 -2.39 -0.02 2.11 16 43 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.73 8.10 -2.38 -0.02 1.71 16 Total: -1.00 -77.63 385.60 2.74 -74.89 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.28 Total: 22.36 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 8.20 Total: 21.83 kcal Atomic # 7 Polarization: -140.16 SS G_CDS: -7.71 Total: -147.87 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.06 Total: -19.56 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.63 2.74 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.018 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds