Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34772 * 119.99753 * 274.99983 * 4 2 1 6 6 O 1.21602 * 120.00355 * 359.97438 * 5 4 2 7 7 C 1.47423 * 120.00028 * 180.02562 * 5 4 2 8 8 C 1.41375 * 126.40510 * 0.02562 * 7 5 4 9 9 N 1.30443 * 108.08289 * 179.97438 * 8 7 5 10 10 N 1.39941 * 108.91545 * 0.02562 * 9 8 7 11 11 C 1.39810 * 125.77826 * 180.02562 * 10 9 8 12 12 C 1.38936 * 119.68663 * 359.69812 * 11 10 9 13 13 C 1.38422 * 119.10644 * 179.79879 * 12 11 10 14 14 C 1.38800 * 118.48314 * 0.46719 * 13 12 11 15 15 C 1.38137 * 119.29102 * 359.75467 * 14 13 12 16 16 N 1.31892 * 120.83761 * 0.02562 * 15 14 13 17 17 C 1.34626 * 108.44169 * 359.72407 * 10 9 8 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36940 * 136.05404 * 207.09125 * 20 19 18 22 22 H 1.07992 * 120.00476 * 7.50014 * 21 20 19 23 23 C 1.38809 * 119.99403 * 187.50851 * 21 20 19 24 24 N 1.31620 * 120.00068 * 174.39899 * 23 21 20 25 25 Si 1.86807 * 120.00352 * 354.39502 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95922 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.96098 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.96130 * 25 23 21 29 29 C 1.47068 * 87.88382 * 27.34125 * 20 19 18 30 30 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.07998 * 125.95891 * 359.97438 * 8 7 5 35 35 H 1.08001 * 120.45351 * 0.02562 * 12 11 10 36 36 H 1.07999 * 120.76335 * 180.22497 * 13 12 11 37 37 H 1.07991 * 120.35476 * 179.72847 * 14 13 12 38 38 H 1.07997 * 119.57802 * 179.97438 * 15 14 13 39 39 H 1.08003 * 126.31424 * 180.26837 * 17 10 9 40 40 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.00405 * 24 23 21 44 44 H 1.09002 * 113.46505 * 87.44231 * 29 20 19 45 45 H 1.08999 * 113.46808 * 217.87742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1618 2.4116 7 6 2.6390 -0.7130 3.5607 8 6 3.0132 -2.0733 3.6502 9 7 3.3930 -2.3090 4.8757 10 7 3.2817 -1.1291 5.6199 11 6 3.5972 -0.9842 6.9742 12 6 4.0610 -2.0785 7.6936 13 6 4.3738 -1.9205 9.0328 14 6 4.2013 -0.6699 9.6097 15 6 3.7312 0.3727 8.8350 16 7 3.4459 0.1925 7.5600 17 6 2.8258 -0.1557 4.8094 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7332 -4.0013 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5117 30 1 -0.3633 0.5841 0.8455 31 1 -0.3633 0.4403 -0.9286 32 1 -0.3633 -1.0243 0.0831 33 1 2.2491 -1.6318 1.1526 34 1 2.9889 -2.7921 2.8445 35 1 4.1795 -3.0388 7.2137 36 1 4.7399 -2.7522 9.6164 37 1 4.4317 -0.5138 10.6531 38 1 3.5949 1.3476 9.2792 39 1 2.6384 0.8714 5.0859 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970522896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 152.564975 kcal Electronic energy + Delta-G solvation = -28039.413965 eV Core-core repulsion = 24061.410086 eV Total energy + Delta-G solvation = -3978.003880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14879 -40.52032 -39.62871 -38.32832 -34.96487 -34.28189 -33.12633 -32.37949 -31.17472 -30.78156 -29.61481 -27.78106 -25.42535 -24.96897 -24.43195 -23.86079 -22.57849 -21.61031 -20.75576 -20.22482 -19.55235 -18.88672 -17.47326 -17.10655 -16.97423 -16.30631 -16.17785 -16.09633 -15.34232 -15.22513 -14.81929 -14.77831 -14.27398 -14.01296 -13.92581 -13.79208 -13.55164 -13.24666 -13.14877 -12.92785 -12.67709 -12.26872 -11.94665 -11.74679 -11.60207 -11.21008 -11.05444 -11.00444 -10.68247 -10.54287 -10.31881 -10.29290 -10.13244 -9.90454 -9.61908 -9.17862 -9.12345 -8.97369 -8.87674 -8.74341 -7.13659 -6.27174 -3.20934 0.06877 0.56502 1.45414 1.54025 1.81445 3.17806 3.18958 3.38759 3.42979 3.47623 3.67457 3.72906 3.92403 4.26531 4.33701 4.41217 4.51280 4.62363 4.66401 4.72628 4.81696 4.97886 5.02912 5.11331 5.13028 5.32611 5.36619 5.45679 5.52311 5.52834 5.59832 5.79834 5.83305 5.90782 5.93636 6.10516 6.22068 6.27199 6.29482 6.36064 6.43559 6.48894 6.63865 6.82163 6.94768 7.14720 7.31648 7.60663 8.25739 8.30588 8.99807 9.52510 10.39348 11.22713 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.001941 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.702009 B =14425.519660 C =14879.390448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 H 0.091 0.909 4 N -0.714 5.714 5 C 0.595 3.405 6 O -0.546 6.546 7 C -0.281 4.281 8 C 0.102 3.898 9 N -0.287 5.287 10 N -0.318 5.318 11 C 0.366 3.634 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.184 4.184 15 C 0.135 3.865 16 N -0.505 5.505 17 C 0.154 3.846 18 C -0.141 4.141 19 C 0.130 3.870 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.082 0.918 23 C -0.026 4.026 24 N -0.935 5.935 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.109 3.891 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.398 0.602 34 H 0.202 0.798 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.196 0.804 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -3.838 34.251 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.109 0.891 4 N -0.364 5.364 5 C 0.381 3.619 6 O -0.425 6.425 7 C -0.295 4.295 8 C -0.088 4.088 9 N -0.104 5.104 10 N -0.092 5.092 11 C 0.139 3.861 12 C -0.182 4.182 13 C -0.078 4.078 14 C -0.205 4.205 15 C -0.023 4.023 16 N -0.218 5.218 17 C 0.008 3.992 18 C -0.161 4.161 19 C 0.003 3.997 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.100 0.900 23 C -0.225 4.225 24 N -0.577 5.577 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.213 1.213 29 C -0.018 4.018 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.218 0.782 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.186 0.814 39 H 0.213 0.787 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.039 -2.496 33.368 33.838 hybrid contribution 1.349 -1.242 0.953 2.067 sum -3.690 -3.738 34.321 34.721 Atomic orbital electron populations 1.22140 0.95283 1.01977 1.02452 1.21007 0.93868 0.97469 0.82709 0.89128 1.45816 1.67254 1.13948 1.09343 1.17082 0.77011 0.85857 0.81910 1.90787 1.51247 1.15396 1.85022 1.20462 1.18509 0.94957 0.95555 1.24370 0.94283 0.95529 0.94668 1.77264 1.25205 1.03209 1.04700 1.45425 1.49169 1.08256 1.06374 1.17714 0.95913 0.90831 0.81614 1.21670 1.01804 0.99743 0.94967 1.21583 0.94624 0.97929 0.93703 1.22230 1.02206 0.93874 1.02157 1.22589 0.93006 0.99741 0.86987 1.66878 1.18829 1.22589 1.13461 1.23199 0.91583 0.95734 0.88697 1.23587 0.98490 1.00372 0.93679 1.22304 0.92546 0.98503 0.86331 1.45971 1.19347 1.69251 1.01125 1.20151 1.08454 1.30761 0.83579 0.90022 1.25741 1.05702 0.99844 0.91184 1.70921 1.12009 1.46391 1.28358 0.83728 0.75087 0.76221 0.74765 1.22246 1.22027 1.21274 1.22737 0.90392 0.95763 0.92861 0.92379 0.91307 0.92527 0.76783 0.78150 0.83134 0.83622 0.83806 0.81356 0.78691 0.88270 0.93899 0.94519 0.93000 0.93563 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 2 C 0.15 2.15 2.35 -67.93 -0.16 1.99 16 3 H 0.09 1.46 7.41 -51.93 -0.38 1.08 16 4 N -0.71 -8.52 4.93 -54.88 -0.27 -8.79 16 5 C 0.59 8.03 7.78 -12.52 -0.10 7.93 16 6 O -0.55 -9.30 16.56 5.28 0.09 -9.22 16 7 C -0.28 -3.23 6.13 -105.05 -0.64 -3.87 16 8 C 0.10 0.96 11.50 -16.95 -0.19 0.77 16 9 N -0.29 -3.08 11.74 30.88 0.36 -2.71 16 10 N -0.32 -3.52 3.76 -11.74 -0.04 -3.56 16 11 C 0.37 3.60 7.54 -154.38 -1.16 2.44 16 12 C -0.16 -1.20 9.69 -39.26 -0.38 -1.58 16 13 C -0.05 -0.25 10.17 -39.31 -0.40 -0.65 16 14 C -0.18 -0.75 10.11 -39.41 -0.40 -1.15 16 15 C 0.13 0.78 11.18 -17.56 -0.20 0.58 16 16 N -0.50 -4.64 9.82 -12.29 -0.12 -4.77 16 17 C 0.15 1.77 10.86 -16.41 -0.18 1.59 16 18 C -0.14 -2.29 3.52 -89.97 -0.32 -2.60 16 19 C 0.13 2.50 8.12 -8.50 -0.07 2.43 16 20 N -0.63 -15.50 3.69 -184.58 -0.68 -16.19 16 21 C -0.30 -8.84 11.08 -15.06 -0.17 -9.00 16 22 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 23 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 24 N -0.93 -29.83 13.70 55.49 0.76 -29.07 16 25 Si 1.07 27.00 25.16 -169.99 -4.28 22.73 16 26 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 27 H -0.29 -6.89 6.51 56.52 0.37 -6.53 16 28 H -0.29 -6.76 6.21 56.52 0.35 -6.41 16 29 C 0.11 2.26 5.27 -8.37 -0.04 2.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.40 3.67 7.56 -40.82 -0.31 3.36 16 34 H 0.20 1.17 7.50 -52.49 -0.39 0.77 16 35 H 0.15 1.07 7.67 -52.49 -0.40 0.67 16 36 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.14 0.17 8.06 -52.49 -0.42 -0.26 16 38 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.20 2.11 8.03 -52.48 -0.42 1.69 16 40 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 44 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 45 H 0.05 1.16 4.72 -51.93 -0.25 0.91 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -37.46 379.63 -8.62 -46.09 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.01 Total: 1.20 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -4.15 Total: -1.44 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 0.01 Total: -65.08 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.28 Total: 22.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.46 -8.62 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.654 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds