Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47683 * 119.99528 * 179.97438 * 5 4 2 8 8 C 1.39688 * 120.08439 * 359.72440 * 7 5 4 9 9 C 1.37745 * 119.92100 * 179.72002 * 8 7 5 10 10 C 1.39023 * 120.07961 * 0.55354 * 9 8 7 11 11 N 1.39935 * 119.92126 * 179.69479 * 10 9 8 12 12 C 1.36316 * 126.86685 * 0.02837 * 11 10 9 13 13 C 1.34957 * 106.78045 * 179.97438 * 12 11 10 14 14 N 1.33376 * 109.01759 * 359.97438 * 13 12 11 15 15 N 1.28768 * 109.92458 * 359.71435 * 14 13 12 16 16 C 1.39029 * 120.15886 * 359.72515 * 10 9 8 17 17 C 1.37743 * 120.08014 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 31 31 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08007 * 120.04099 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.96087 * 180.29354 * 9 8 7 36 36 H 1.07999 * 126.60923 * 359.96198 * 12 11 10 37 37 H 1.08000 * 125.49530 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.95692 * 179.97438 * 16 10 9 39 39 H 1.07995 * 120.04109 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7147 -3.5627 8 6 2.9783 -2.0685 -3.5003 9 6 3.4321 -2.7159 -4.6283 10 6 3.5643 -2.0209 -5.8250 11 7 4.0316 -2.6804 -6.9673 12 6 4.3943 -3.9908 -7.0642 13 6 4.7790 -4.1952 -8.3415 14 7 4.6605 -3.0526 -9.0192 15 7 4.2136 -2.1268 -8.2438 16 6 3.2338 -0.6720 -5.8895 17 6 2.7736 -0.0195 -4.7671 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2489 -1.6319 -1.1525 34 1 2.8805 -2.6079 -2.5698 35 1 3.6895 -3.7638 -4.5819 36 1 4.3772 -4.7241 -6.2715 37 1 5.1269 -5.1328 -8.7493 38 1 3.3382 -0.1351 -6.8207 39 1 2.5174 1.0284 -4.8178 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970729575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = 145.042370 kcal Electronic energy + Delta-G solvation = -28483.591243 eV Core-core repulsion = 24505.261159 eV Total energy + Delta-G solvation = -3978.330084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23375 -41.51195 -40.45897 -39.37669 -35.95473 -35.55257 -34.14985 -32.68679 -31.73458 -31.59336 -30.26871 -29.49930 -26.42019 -26.27823 -25.62305 -24.50572 -23.64531 -22.72730 -22.17520 -21.35113 -20.35785 -19.62082 -18.80261 -18.42348 -17.26368 -16.92246 -16.83366 -16.55827 -16.27235 -16.16213 -15.98317 -15.63574 -15.48646 -15.30067 -14.80716 -14.58291 -14.45251 -14.18438 -13.97107 -13.71797 -13.47458 -12.99865 -12.96023 -12.91100 -12.76240 -12.52240 -12.35015 -12.29330 -12.18531 -12.13546 -12.00456 -11.68059 -11.45948 -11.14654 -10.82491 -10.72003 -10.46098 -10.24915 -10.08949 -9.57360 -8.74587 -7.83703 -5.12478 -0.82481 0.15859 0.52915 1.06473 1.46123 1.48572 1.54152 1.55846 1.80586 2.10999 2.51111 2.70497 3.28630 3.38816 3.52148 3.56669 3.65569 3.70948 3.76649 3.85156 3.97450 4.05872 4.14414 4.24527 4.39027 4.41552 4.49376 4.57737 4.75967 4.82593 4.87999 4.91018 4.92244 5.05801 5.07314 5.12516 5.14078 5.17280 5.27047 5.32559 5.38853 5.53805 5.62327 5.69165 5.79348 5.82408 6.03677 6.57718 7.01188 7.04934 7.20949 7.69015 8.69962 9.33199 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002147 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.897226 B =13037.988148 C =13575.994983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.185 3.815 3 H 0.077 0.923 4 N -0.700 5.700 5 C 0.555 3.445 6 O -0.580 6.580 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.117 4.117 10 C 0.151 3.849 11 N -0.326 5.326 12 C 0.041 3.959 13 C -0.080 4.080 14 N -0.264 5.264 15 N -0.111 5.111 16 C -0.124 4.124 17 C -0.046 4.046 18 C -0.128 4.128 19 C 0.122 3.878 20 N -0.632 5.632 21 C -0.211 4.211 22 H 0.076 0.924 23 C -0.057 4.057 24 N -0.941 5.941 25 Si 0.960 3.040 26 H -0.271 1.271 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.157 3.843 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.247 0.753 37 H 0.225 0.775 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.245 0.755 44 H 0.020 0.980 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.817 -5.431 -14.579 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.095 0.905 4 N -0.351 5.351 5 C 0.343 3.657 6 O -0.461 6.461 7 C -0.143 4.143 8 C -0.071 4.071 9 C -0.137 4.137 10 C 0.059 3.941 11 N -0.108 5.108 12 C -0.108 4.108 13 C -0.235 4.235 14 N -0.132 5.132 15 N -0.088 5.088 16 C -0.144 4.144 17 C -0.065 4.065 18 C -0.148 4.148 19 C -0.003 4.003 20 N -0.358 5.358 21 C -0.340 4.340 22 H 0.094 0.906 23 C -0.250 4.250 24 N -0.591 5.591 25 Si 0.790 3.210 26 H -0.196 1.196 27 H -0.224 1.224 28 H -0.223 1.223 29 C 0.031 3.969 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.186 0.814 35 H 0.200 0.800 36 H 0.263 0.737 37 H 0.241 0.759 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.184 -3.414 -15.445 21.926 hybrid contribution -1.266 -1.122 1.160 2.051 sum 13.918 -4.536 -14.285 20.454 Atomic orbital electron populations 1.21938 0.95563 1.01947 0.99492 1.20325 0.93344 0.95686 0.82567 0.90482 1.45884 1.65634 1.14630 1.08981 1.18516 0.77263 0.86190 0.83727 1.90760 1.52354 1.17508 1.85495 1.20054 1.04973 0.95682 0.93614 1.21490 0.93812 0.91982 0.99770 1.21167 1.01248 1.02313 0.88989 1.17987 0.99316 0.92538 0.84305 1.48175 1.44261 1.09288 1.09042 1.24524 0.98461 0.86063 1.01796 1.24010 1.08914 0.99143 0.91457 1.74336 1.11061 1.00920 1.26909 1.82153 1.22427 1.18728 0.85509 1.20878 1.00843 0.92810 0.99837 1.21150 0.94240 1.00794 0.90345 1.23126 0.99804 0.98425 0.93396 1.22551 0.87415 0.95704 0.94674 1.45931 1.04660 1.21846 1.63367 1.19123 0.84852 1.03072 1.26907 0.90629 1.25310 1.00954 0.96831 1.01955 1.69931 1.34411 1.09974 1.44755 0.85274 0.81294 0.77202 0.77197 1.19610 1.22450 1.22298 1.22192 0.89551 0.91429 0.93701 0.96128 0.93095 0.91947 0.75005 0.81418 0.80012 0.73656 0.75882 0.84081 0.84275 0.86986 0.93569 0.92949 0.94572 0.96252 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.07 71.98 0.58 -4.73 16 2 C 0.19 5.94 2.76 44.99 0.12 6.06 16 3 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 4 N -0.70 -18.13 5.03 -445.57 -2.24 -20.37 16 5 C 0.55 15.51 7.73 86.74 0.67 16.18 16 6 O -0.58 -21.04 16.00 -3.93 -0.06 -21.10 16 7 C -0.14 -2.91 5.87 -20.08 -0.12 -3.02 16 8 C -0.05 -0.68 9.53 22.50 0.21 -0.47 16 9 C -0.12 -1.20 9.46 22.34 0.21 -0.99 16 10 C 0.15 2.41 6.70 38.23 0.26 2.66 16 11 N -0.33 -5.43 3.85 -187.13 -0.72 -6.15 16 12 C 0.04 0.36 10.92 83.24 0.91 1.27 16 13 C -0.08 -0.94 11.86 83.70 0.99 0.05 16 14 N -0.26 -5.65 12.33 -58.72 -0.72 -6.38 16 15 N -0.11 -2.59 13.15 37.02 0.49 -2.10 16 16 C -0.12 -2.34 9.66 22.34 0.22 -2.12 16 17 C -0.05 -0.96 9.58 22.51 0.22 -0.74 16 18 C -0.13 -3.93 4.24 -10.37 -0.04 -3.97 16 19 C 0.12 4.38 7.85 83.18 0.65 5.03 16 20 N -0.63 -29.10 2.18 -737.98 -1.61 -30.71 16 21 C -0.21 -11.07 9.60 84.03 0.81 -10.27 16 22 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 23 C -0.06 -3.06 5.50 84.86 0.47 -2.60 16 24 N -0.94 -52.66 11.50 21.65 0.25 -52.42 16 25 Si 0.96 44.56 29.55 68.60 2.03 46.58 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 29 C 0.16 6.34 6.41 83.27 0.53 6.88 16 30 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 2.33 6.33 -2.39 -0.02 2.32 16 32 H 0.06 2.81 5.95 -2.39 -0.01 2.80 16 33 H 0.41 8.13 6.63 -92.71 -0.61 7.52 16 34 H 0.17 1.37 6.40 -2.91 -0.02 1.35 16 35 H 0.18 0.28 6.82 -2.91 -0.02 0.26 16 36 H 0.25 -0.61 7.16 -2.91 -0.02 -0.63 16 37 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.14 2.72 7.72 -2.91 -0.02 2.69 16 39 H 0.14 3.10 7.64 -2.91 -0.02 3.08 16 40 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 2.45 5.72 -2.39 -0.01 2.43 16 Total: -1.00 -76.33 373.49 4.52 -71.81 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.43 Total: 11.60 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.69 Total: 9.23 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -4.56 Total: -118.13 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.33 4.52 -71.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970729575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.854 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds