Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21511 * 120.00435 * 0.02562 * 5 4 2 7 7 C 1.48160 * 119.99777 * 180.02562 * 5 4 2 8 8 C 1.39954 * 120.89219 * 359.72063 * 7 5 4 9 9 C 1.38039 * 119.13285 * 179.77634 * 8 7 5 10 10 N 1.31856 * 120.98465 * 0.51033 * 9 8 7 11 11 C 1.32226 * 121.97276 * 359.74194 * 10 9 8 12 12 N 1.39848 * 119.62390 * 180.02562 * 11 10 9 13 13 C 1.37172 * 126.48763 * 4.68125 * 12 11 10 14 14 C 1.34621 * 106.82650 * 179.87872 * 13 12 11 15 15 N 1.34146 * 108.21479 * 0.39395 * 14 13 12 16 16 C 1.30481 * 109.37444 * 359.75092 * 15 14 13 17 17 C 1.38910 * 120.75057 * 359.97438 * 11 10 9 18 18 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 19 19 C 1.53491 * 114.20581 * 175.13701 * 18 2 1 20 20 N 1.47068 * 87.98931 * 220.34690 * 19 18 2 21 21 C 1.36939 * 136.05910 * 207.08893 * 20 19 18 22 22 H 1.07998 * 120.00182 * 7.79505 * 21 20 19 23 23 C 1.38813 * 119.99786 * 187.79929 * 21 20 19 24 24 N 1.31621 * 119.99915 * 195.16074 * 23 21 20 25 25 Si 1.86799 * 119.99814 * 15.16296 * 23 21 20 26 26 H 1.48507 * 109.47258 * 269.99571 * 25 23 21 27 27 H 1.48497 * 109.47644 * 30.00108 * 25 23 21 28 28 H 1.48510 * 109.46916 * 150.00000 * 25 23 21 29 29 C 1.47064 * 87.88132 * 27.34445 * 20 19 18 30 30 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 31 31 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 32 32 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 33 33 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 34 34 H 1.07997 * 120.42835 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.50916 * 180.27444 * 9 8 7 36 36 H 1.07995 * 126.58598 * 0.03033 * 13 12 11 37 37 H 1.07997 * 125.88730 * 180.10332 * 14 13 12 38 38 H 1.07999 * 125.72321 * 179.97438 * 16 15 14 39 39 H 1.07994 * 120.52933 * 180.02562 * 17 11 10 40 40 H 1.09004 * 113.41670 * 308.34718 * 18 2 1 41 41 H 1.09006 * 113.46406 * 105.56897 * 19 18 2 42 42 H 1.09000 * 113.52637 * 335.13768 * 19 18 2 43 43 H 0.96996 * 119.99969 * 354.93710 * 24 23 21 44 44 H 1.08997 * 113.47035 * 87.43951 * 29 20 19 45 45 H 1.09006 * 113.46815 * 217.87607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8577 1.1604 2.4118 7 6 2.6414 -0.7169 3.5666 8 6 2.9745 -2.0756 3.5261 9 6 3.4360 -2.6889 4.6734 10 7 3.5560 -2.0164 5.8012 11 6 3.2485 -0.7333 5.8875 12 7 3.3953 -0.0679 7.1088 13 6 3.9251 -0.5876 8.2624 14 6 3.8781 0.3893 9.1874 15 7 3.3280 1.4749 8.6232 16 6 3.0343 1.2143 7.3789 17 6 2.7823 -0.0386 4.7786 18 6 2.0400 -0.7212 -1.2493 19 6 3.5649 -0.6826 -1.4198 20 7 3.3466 -0.4678 -2.8583 21 6 4.0405 -0.7260 -4.0102 22 1 4.9434 -1.3177 -3.9757 23 6 3.5835 -0.2273 -5.2224 24 7 4.0589 -0.7063 -6.3524 25 14 2.2937 1.1237 -5.2497 26 1 0.9394 0.5148 -5.2731 27 1 2.4357 1.9684 -4.0367 28 1 2.4805 1.9620 -6.4613 29 6 2.0581 0.1522 -2.5146 30 1 -0.3634 0.4370 -0.9301 31 1 -0.3634 -1.0240 0.0866 32 1 -0.3634 0.5870 0.8435 33 1 2.2490 -1.6318 1.1525 34 1 2.8748 -2.6361 2.6083 35 1 3.6990 -3.7361 4.6479 36 1 4.3086 -1.5876 8.4011 37 1 4.2198 0.3108 10.2089 38 1 2.5803 1.9020 6.6808 39 1 2.5326 1.0095 4.8530 40 1 1.5993 -1.7082 -1.3899 41 1 4.0513 -1.6310 -1.1915 42 1 4.0372 0.1639 -0.9213 43 1 4.7803 -1.3545 -6.3390 44 1 2.1321 1.2192 -2.3045 45 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970890961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = 139.920818 kcal Electronic energy + Delta-G solvation = -28287.194185 eV Core-core repulsion = 24308.642014 eV Total energy + Delta-G solvation = -3978.552171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.79387 -41.04104 -39.80598 -38.59443 -35.35347 -34.77496 -33.44302 -32.45874 -31.10496 -30.36125 -29.72831 -27.91470 -25.79366 -25.18451 -24.71166 -23.85888 -22.33917 -21.45966 -21.03916 -20.70891 -19.84649 -19.08985 -17.64290 -17.58726 -16.99112 -16.43498 -16.24303 -16.05980 -15.41995 -15.23882 -15.18350 -14.47288 -14.39918 -14.31394 -14.19655 -14.12067 -13.85546 -13.71506 -13.43563 -13.12208 -12.65008 -12.43539 -12.10377 -11.90914 -11.36397 -11.28778 -11.21159 -10.83554 -10.71979 -10.56907 -10.55028 -10.46668 -10.18949 -10.08985 -9.55421 -9.35031 -9.31370 -9.22420 -8.94036 -8.76363 -7.25725 -6.36869 -3.29723 -0.04632 0.19284 1.65310 1.89339 2.51835 2.69535 2.70444 3.25386 3.35905 3.44115 3.58062 3.66067 3.96660 4.02612 4.18780 4.25627 4.34012 4.53550 4.57710 4.70355 4.80505 4.89747 4.94841 4.97468 5.07704 5.21649 5.26318 5.33566 5.35900 5.42299 5.61943 5.62256 5.71339 5.75479 5.90695 6.03597 6.14599 6.15587 6.19850 6.23547 6.28204 6.35990 6.61331 6.81459 7.04777 7.10825 7.17915 7.53649 7.82764 8.17291 8.90556 9.43916 10.29638 11.12844 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.002062 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.532487 B =13574.897563 C =13932.229942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.093 0.907 4 N -0.706 5.706 5 C 0.557 3.443 6 O -0.524 6.524 7 C -0.053 4.053 8 C -0.151 4.151 9 C 0.135 3.865 10 N -0.485 5.485 11 C 0.343 3.657 12 N -0.412 5.412 13 C -0.026 4.026 14 C -0.030 4.030 15 N -0.477 5.477 16 C 0.196 3.804 17 C -0.125 4.125 18 C -0.142 4.142 19 C 0.125 3.875 20 N -0.623 5.623 21 C -0.308 4.308 22 H 0.081 0.919 23 C -0.023 4.023 24 N -0.930 5.930 25 Si 1.061 2.939 26 H -0.292 1.292 27 H -0.281 1.281 28 H -0.294 1.294 29 C 0.114 3.886 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.214 0.786 39 H 0.157 0.843 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 -4.221 26.874 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.356 5.356 5 C 0.341 3.659 6 O -0.401 6.401 7 C -0.064 4.064 8 C -0.172 4.172 9 C -0.023 4.023 10 N -0.198 5.198 11 C 0.115 3.885 12 N -0.094 5.094 13 C -0.156 4.156 14 C -0.174 4.174 15 N -0.194 5.194 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.162 4.162 19 C -0.002 4.002 20 N -0.351 5.351 21 C -0.434 4.434 22 H 0.099 0.901 23 C -0.223 4.223 24 N -0.572 5.572 25 Si 0.892 3.108 26 H -0.220 1.220 27 H -0.207 1.207 28 H -0.222 1.222 29 C -0.012 4.012 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.200 0.800 37 H 0.194 0.806 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.736 -2.214 26.733 27.431 hybrid contribution 1.122 -1.778 -0.149 2.107 sum -4.614 -3.992 26.584 27.275 Atomic orbital electron populations 1.22143 0.94853 1.02153 1.02762 1.21130 0.94161 0.97542 0.82460 0.88883 1.45989 1.66031 1.14214 1.09395 1.17976 0.78463 0.86555 0.82861 1.90809 1.49559 1.15070 1.84656 1.20311 0.97988 0.93991 0.94124 1.22454 0.99467 0.94248 1.01078 1.22608 0.93629 1.00086 0.85950 1.66874 1.16841 1.06409 1.29656 1.18027 0.96671 0.89168 0.84603 1.43142 1.46207 1.12144 1.07932 1.22943 1.05557 1.01829 0.85246 1.22438 1.05069 0.89405 1.00514 1.70360 1.15723 1.27853 1.05435 1.25471 1.03694 0.84064 0.95304 1.21642 1.00245 1.02342 0.90535 1.23604 0.98551 1.00520 0.93553 1.22338 0.92448 0.98472 0.86906 1.46188 1.18379 1.69623 1.00871 1.20124 1.09703 1.30427 0.83117 0.90084 1.25801 1.03741 1.02045 0.90683 1.70905 1.27825 1.32370 1.26070 0.83796 0.75200 0.76679 0.75123 1.21983 1.20743 1.22155 1.22640 0.90425 0.95638 0.92513 0.90916 0.92375 0.92347 0.76372 0.83126 0.80685 0.80007 0.80570 0.76966 0.82572 0.88141 0.93870 0.94804 0.92833 0.93519 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.15 1.84 2.34 -67.93 -0.16 1.68 16 3 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 4 N -0.71 -6.89 4.91 -54.65 -0.27 -7.16 16 5 C 0.56 6.07 7.76 -12.19 -0.09 5.98 16 6 O -0.52 -7.52 16.10 5.36 0.09 -7.43 16 7 C -0.05 -0.45 5.91 -104.67 -0.62 -1.07 16 8 C -0.15 -0.90 9.61 -39.01 -0.37 -1.28 16 9 C 0.13 0.81 11.17 -17.61 -0.20 0.61 16 10 N -0.49 -4.14 9.87 -12.34 -0.12 -4.26 16 11 C 0.34 3.14 7.50 -154.42 -1.16 1.99 16 12 N -0.41 -3.86 2.98 -63.85 -0.19 -4.05 16 13 C -0.03 -0.23 11.17 -16.44 -0.18 -0.41 16 14 C -0.03 -0.27 11.85 -17.82 -0.21 -0.48 16 15 N -0.48 -5.20 11.24 -14.47 -0.16 -5.36 16 16 C 0.20 1.81 11.89 -89.59 -1.07 0.75 16 17 C -0.12 -1.10 9.07 -38.82 -0.35 -1.45 16 18 C -0.14 -2.08 3.52 -89.97 -0.32 -2.40 16 19 C 0.12 2.23 8.13 -8.52 -0.07 2.16 16 20 N -0.62 -14.60 3.62 -184.61 -0.67 -15.27 16 21 C -0.31 -8.63 11.03 -15.06 -0.17 -8.80 16 22 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 23 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 24 N -0.93 -28.87 13.70 55.49 0.76 -28.11 16 25 Si 1.06 25.96 25.50 -169.99 -4.34 21.63 16 26 H -0.29 -6.78 6.97 56.52 0.39 -6.38 16 27 H -0.28 -6.38 5.66 56.52 0.32 -6.06 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 C 0.11 2.22 5.17 -8.38 -0.04 2.18 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 2.84 6.74 -40.82 -0.28 2.57 16 34 H 0.15 0.49 6.53 -52.49 -0.34 0.15 16 35 H 0.18 0.48 8.06 -52.49 -0.42 0.05 16 36 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.21 1.32 7.07 -52.49 -0.37 0.95 16 39 H 0.16 1.28 6.46 -52.49 -0.34 0.94 16 40 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.26 8.01 8.73 -40.82 -0.36 7.66 16 44 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 45 H 0.05 1.09 6.22 -51.93 -0.32 0.77 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -36.38 375.86 -9.85 -46.23 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.86 Total: 0.83 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -4.75 Total: -2.71 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.65 Total: -64.21 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.09 Total: -7.43 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.34 Total: 21.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.38 -9.85 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970890961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.148 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds