Wall clock time and date at job start Sat Apr 11 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21543 * 120.00172 * 359.97438 * 5 4 2 7 7 C 1.47859 * 119.99754 * 179.97438 * 5 4 2 8 8 C 1.39617 * 120.11537 * 0.02562 * 7 5 4 9 9 C 1.37976 * 119.98415 * 179.97438 * 8 7 5 10 10 C 1.38257 * 120.21694 * 0.02562 * 9 8 7 11 11 C 1.38900 * 120.23095 * 0.02562 * 10 9 8 12 12 N 1.40277 * 119.99663 * 179.97438 * 11 10 9 13 13 C 1.36107 * 125.94040 * 4.71166 * 12 11 10 14 14 C 1.35373 * 106.04909 * 179.85077 * 13 12 11 15 15 N 1.33776 * 106.53685 * 0.40783 * 14 13 12 16 16 N 1.28607 * 109.05789 * 359.73816 * 15 14 13 17 17 C 1.38587 * 120.01006 * 359.70003 * 11 10 9 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47062 * 87.98889 * 220.34720 * 19 18 2 21 21 C 1.36934 * 136.06073 * 207.09188 * 20 19 18 22 22 H 1.08001 * 120.00026 * 6.47907 * 21 20 19 23 23 C 1.38805 * 120.00345 * 186.48472 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.26684 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.26795 * 23 21 20 26 26 H 1.48507 * 109.47008 * 265.00931 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47068 * 87.88330 * 27.33967 * 20 19 18 30 30 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 31 31 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 32 32 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.07995 * 120.00747 * 0.02562 * 8 7 5 35 35 H 1.08008 * 119.88905 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.88814 * 179.97438 * 10 9 8 37 37 H 1.08002 * 126.97653 * 0.02562 * 13 12 11 38 38 H 1.07998 * 126.72930 * 180.15033 * 14 13 12 39 39 H 1.08005 * 120.10950 * 180.27530 * 17 11 10 40 40 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.46025 * 87.44010 * 29 20 19 45 45 H 1.09003 * 113.47098 * 217.87906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1610 2.4116 7 6 2.6395 -0.7156 3.5644 8 6 2.9724 -2.0702 3.5043 9 6 3.4321 -2.7180 4.6324 10 6 3.5643 -2.0302 5.8245 11 6 3.2348 -0.6827 5.8947 12 7 3.3704 0.0102 7.1068 13 6 3.8947 -0.4903 8.2588 14 6 3.8339 0.5137 9.1649 15 7 3.2779 1.5575 8.5398 16 7 3.0153 1.2282 7.3246 17 6 2.7775 -0.0212 4.7660 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3396 -0.4639 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3782 0.2983 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4362 -0.9304 32 1 -0.3634 -1.0240 0.0874 33 1 2.2491 -1.6318 1.1524 34 1 2.8708 -2.6106 2.5748 35 1 3.6887 -3.7660 4.5843 36 1 3.9243 -2.5426 6.7044 37 1 4.2832 -1.4855 8.4171 38 1 4.1651 0.4775 10.1922 39 1 2.5250 1.0276 4.8177 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970982429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:57 Heat of formation + Delta-G solvation = 160.466145 kcal Electronic energy + Delta-G solvation = -28153.792095 eV Core-core repulsion = 24176.130836 eV Total energy + Delta-G solvation = -3977.661259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.82731 -40.60107 -39.18982 -38.10125 -35.17580 -34.91386 -32.43031 -32.12071 -31.37132 -30.83331 -29.84667 -27.57530 -25.25135 -24.80028 -24.45115 -23.97300 -22.82967 -21.80898 -21.29119 -20.47390 -19.69571 -18.78763 -17.17290 -16.90199 -16.80849 -16.79025 -16.24749 -15.55661 -15.31565 -15.00091 -14.79194 -14.69495 -14.31388 -14.25453 -13.99256 -13.64380 -13.50612 -13.14786 -12.59006 -12.40672 -12.35176 -12.14321 -11.84044 -11.68091 -11.46552 -11.41608 -11.38824 -11.28674 -10.95649 -10.76383 -10.41973 -10.22468 -9.91714 -9.90236 -9.81052 -9.65363 -9.27319 -9.18791 -8.96107 -8.81328 -6.92499 -5.82515 -3.13688 -0.00558 0.43406 1.44779 1.76476 2.14552 2.57798 3.02568 3.36296 3.39752 3.41087 3.43576 3.85111 4.02394 4.18041 4.41385 4.44460 4.46504 4.47532 4.64629 4.75532 4.82122 5.05365 5.09463 5.14478 5.28251 5.34171 5.49502 5.55606 5.59122 5.64895 5.68906 5.74955 5.75378 5.91780 5.94782 6.03244 6.21605 6.32602 6.34108 6.38080 6.50312 6.59239 6.71729 7.13702 7.28912 7.46595 7.48715 7.92558 8.03460 8.14184 8.99248 9.65862 10.60070 11.36250 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.001936 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.616217 B =14459.027451 C =14777.962608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.091 0.909 4 N -0.710 5.710 5 C 0.554 3.446 6 O -0.529 6.529 7 C -0.106 4.106 8 C -0.076 4.076 9 C -0.103 4.103 10 C -0.097 4.097 11 C 0.110 3.890 12 N -0.241 5.241 13 C -0.051 4.051 14 C -0.044 4.044 15 N -0.263 5.263 16 N -0.072 5.072 17 C -0.044 4.044 18 C -0.155 4.155 19 C 0.124 3.876 20 N -0.609 5.609 21 C -0.221 4.221 22 H 0.081 0.919 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.175 3.825 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.195 0.805 38 H 0.196 0.804 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.037 0.963 42 H 0.031 0.969 43 H 0.255 0.745 44 H 0.031 0.969 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -10.475 26.525 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.360 5.360 5 C 0.340 3.660 6 O -0.406 6.406 7 C -0.110 4.110 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.118 4.118 11 C 0.019 3.981 12 N -0.029 5.029 13 C -0.199 4.199 14 C -0.200 4.200 15 N -0.129 5.129 16 N -0.051 5.051 17 C -0.064 4.064 18 C -0.176 4.176 19 C -0.002 4.002 20 N -0.335 5.335 21 C -0.348 4.348 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.215 1.215 29 C 0.049 3.951 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.212 0.788 38 H 0.213 0.787 39 H 0.174 0.826 40 H 0.111 0.889 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.485 -8.292 25.600 26.914 hybrid contribution 1.182 -1.646 -0.395 2.065 sum 0.697 -9.938 25.205 27.103 Atomic orbital electron populations 1.22118 0.95174 1.01768 1.02637 1.21093 0.93934 0.97502 0.82507 0.89130 1.46047 1.66389 1.14023 1.09565 1.18041 0.78342 0.86625 0.82985 1.90816 1.49816 1.15236 1.84748 1.19978 1.02641 0.94204 0.94179 1.21600 0.95244 0.93260 0.99419 1.20993 0.99146 1.00735 0.91252 1.21064 0.99655 0.91174 0.99889 1.17502 1.05859 0.91598 0.83094 1.44776 1.39090 1.09978 1.09048 1.23848 1.06829 1.03276 0.85926 1.23699 1.04529 0.89760 1.01981 1.75173 1.13935 1.25065 0.98720 1.78490 1.18669 0.95203 1.12725 1.21076 0.94381 1.01789 0.89189 1.23730 0.98129 1.00909 0.94795 1.22370 0.92781 0.97826 0.87254 1.45661 1.19039 1.69377 0.99408 1.18932 1.05234 1.28088 0.82552 0.90121 1.24840 0.98733 0.99071 0.97774 1.69845 1.25859 1.35904 1.24882 0.86098 0.78380 0.78052 0.83196 1.21591 1.20520 1.21546 1.21951 0.90136 0.93708 0.89311 0.92639 0.90873 0.92714 0.76698 0.84156 0.83649 0.84328 0.78844 0.78727 0.82552 0.88871 0.94512 0.95160 0.93550 0.95115 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.47 37.16 0.35 -1.75 16 2 C 0.15 2.24 2.34 -67.93 -0.16 2.08 16 3 H 0.09 1.55 7.43 -51.93 -0.39 1.16 16 4 N -0.71 -8.41 4.91 -54.75 -0.27 -8.67 16 5 C 0.55 7.32 7.74 -12.32 -0.10 7.23 16 6 O -0.53 -9.13 16.01 5.33 0.09 -9.05 16 7 C -0.11 -1.08 5.87 -104.99 -0.62 -1.70 16 8 C -0.08 -0.51 9.54 -39.16 -0.37 -0.88 16 9 C -0.10 -0.50 10.02 -39.67 -0.40 -0.90 16 10 C -0.10 -0.54 9.45 -39.33 -0.37 -0.91 16 11 C 0.11 0.99 6.66 -83.62 -0.56 0.43 16 12 N -0.24 -2.40 3.56 -10.50 -0.04 -2.43 16 13 C -0.05 -0.34 10.91 -16.68 -0.18 -0.52 16 14 C -0.04 -0.34 12.05 -17.73 -0.21 -0.56 16 15 N -0.26 -3.21 12.39 30.24 0.37 -2.83 16 16 N -0.07 -0.94 12.42 60.35 0.75 -0.19 16 17 C -0.04 -0.48 9.16 -39.00 -0.36 -0.83 16 18 C -0.16 -2.62 3.52 -89.97 -0.32 -2.94 16 19 C 0.12 2.42 8.14 -8.52 -0.07 2.35 16 20 N -0.61 -15.37 3.76 -184.61 -0.69 -16.06 16 21 C -0.22 -6.14 10.73 -15.06 -0.16 -6.30 16 22 H 0.08 2.16 7.84 -52.49 -0.41 1.74 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.17 11.80 55.49 0.65 -26.52 16 25 Si 0.91 21.91 29.56 -169.99 -5.02 16.88 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 C 0.18 3.97 6.79 -8.38 -0.06 3.91 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.40 3.54 6.63 -40.82 -0.27 3.27 16 34 H 0.14 0.63 6.40 -52.49 -0.34 0.30 16 35 H 0.15 0.28 8.06 -52.48 -0.42 -0.15 16 36 H 0.14 0.33 6.77 -52.49 -0.36 -0.03 16 37 H 0.19 0.38 7.12 -52.49 -0.37 0.01 16 38 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.16 2.03 7.29 -52.48 -0.38 1.65 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.61 8.11 -51.92 -0.42 0.19 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.03 0.73 8.00 -51.93 -0.42 0.32 16 45 H 0.06 1.56 7.57 -51.93 -0.39 1.17 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -36.66 381.93 -7.92 -44.58 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.84 Total: 0.12 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -3.67 Total: -1.58 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.78 Total: -56.70 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.66 -7.92 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970982429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.043 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds