Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47469 * 2 1 4 4 N 1.46500 * 109.47500 * 120.00359 * 2 1 3 5 5 C 1.34778 * 119.99866 * 274.99703 * 4 2 1 6 6 O 1.21578 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.47621 * 120.00018 * 179.97438 * 5 4 2 8 8 C 1.39628 * 120.19209 * 306.71918 * 7 5 4 9 9 C 1.37861 * 119.91697 * 179.97438 * 8 7 5 10 10 C 1.38513 * 120.30207 * 359.97438 * 9 8 7 11 11 C 1.38103 * 120.38120 * 359.97438 * 10 9 8 12 12 C 1.38718 * 120.07996 * 359.79139 * 11 10 9 13 13 N 1.39808 * 120.15273 * 180.25029 * 12 11 10 14 14 C 1.36323 * 126.86521 * 353.44313 * 13 12 11 15 15 C 1.34968 * 106.77340 * 179.84854 * 14 13 12 16 16 N 1.33375 * 109.01828 * 0.42420 * 15 14 13 17 17 N 1.28766 * 109.92520 * 359.73706 * 16 15 14 18 18 C 1.53008 * 109.46858 * 239.99947 * 2 1 3 19 19 C 1.53946 * 113.74052 * 158.74450 * 18 2 1 20 20 N 1.47816 * 86.03157 * 222.08553 * 19 18 2 21 21 C 1.36945 * 134.45304 * 204.64440 * 20 19 18 22 22 H 1.07998 * 119.99802 * 173.07450 * 21 20 19 23 23 C 1.38818 * 119.99821 * 353.07293 * 21 20 19 24 24 N 1.31612 * 119.99819 * 5.08155 * 23 21 20 25 25 Si 1.86798 * 119.99638 * 185.07826 * 23 21 20 26 26 H 1.48500 * 109.47226 * 94.97841 * 25 23 21 27 27 H 1.48501 * 109.47133 * 214.97905 * 25 23 21 28 28 H 1.48504 * 109.47389 * 334.97859 * 25 23 21 29 29 C 1.47576 * 91.05400 * 24.55134 * 20 19 18 30 30 H 1.08997 * 109.47039 * 59.99244 * 1 2 3 31 31 H 1.09006 * 109.46553 * 300.00122 * 1 2 3 32 32 H 1.08991 * 109.47292 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 94.99213 * 4 2 1 34 34 H 1.07992 * 120.03961 * 359.95568 * 8 7 5 35 35 H 1.07995 * 119.85037 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.80772 * 180.02562 * 10 9 8 37 37 H 1.07995 * 119.95996 * 180.02562 * 11 10 9 38 38 H 1.07998 * 126.61599 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.48973 * 180.19486 * 15 14 13 40 40 H 1.08994 * 112.94450 * 290.33493 * 18 2 1 41 41 H 1.08998 * 113.76859 * 336.34331 * 19 18 2 42 42 H 1.09000 * 113.77263 * 107.74617 * 19 18 2 43 43 H 0.97006 * 119.99646 * 179.97438 * 24 23 21 44 44 H 1.09005 * 113.76711 * 221.15720 * 29 20 19 45 45 H 1.08993 * 113.87552 * 89.76830 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8585 1.1614 2.4116 7 6 2.6388 -0.7144 3.5625 8 6 2.0231 -1.8908 3.9942 9 6 2.4872 -2.5365 5.1204 10 6 3.5629 -2.0239 5.8265 11 6 4.1819 -0.8617 5.4100 12 6 3.7310 -0.2018 4.2762 13 7 4.3598 0.9720 3.8502 14 6 5.3401 1.6581 4.5034 15 6 5.6522 2.7207 3.7319 16 7 4.8871 2.7043 2.6395 17 7 4.1037 1.6827 2.6677 18 6 2.0399 -0.7213 -1.2493 19 6 3.4847 -0.3522 -1.6317 20 7 2.9976 -0.3177 -3.0269 21 6 3.5873 -0.4758 -4.2528 22 1 2.9784 -0.5135 -5.1440 23 6 4.9675 -0.5876 -4.3498 24 7 5.7016 -0.6422 -3.2588 25 14 5.7828 -0.6604 -6.0289 26 1 6.2199 0.7020 -6.4265 27 1 6.9624 -1.5606 -5.9678 28 1 4.8144 -1.1806 -7.0273 29 6 1.6212 -0.0471 -2.5685 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1525 34 1 1.1841 -2.2943 3.4468 35 1 2.0098 -3.4461 5.4536 36 1 3.9202 -2.5365 6.7074 37 1 5.0203 -0.4683 5.9654 38 1 5.7836 1.3996 5.4536 39 1 6.3984 3.4663 3.9637 40 1 1.8527 -1.7948 -1.2263 41 1 3.8047 0.6189 -1.2541 42 1 4.2070 -1.1449 -1.4367 43 1 6.6661 -0.7207 -3.3266 44 1 0.8585 -0.5969 -3.1199 45 1 1.3908 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970985798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = 167.674601 kcal Electronic energy + Delta-G solvation = -29630.172578 eV Core-core repulsion = 25652.823901 eV Total energy + Delta-G solvation = -3977.348677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21847 -40.22103 -38.88438 -37.73975 -34.84811 -34.45032 -32.37087 -31.82065 -30.77277 -30.16749 -29.61034 -27.43564 -25.17244 -24.52564 -24.16474 -23.76664 -22.14226 -21.52069 -20.99720 -20.21863 -19.28207 -18.54056 -17.38449 -16.65691 -16.16329 -15.78439 -15.72951 -15.65032 -15.29267 -14.80373 -14.48888 -14.38522 -14.01822 -13.94872 -13.76653 -13.42231 -13.25979 -12.92155 -12.49806 -12.32867 -12.04539 -11.93131 -11.60501 -11.44854 -11.28453 -11.19745 -11.17364 -11.06131 -10.83855 -10.66047 -10.26702 -9.95160 -9.69909 -9.62000 -9.46974 -9.43052 -9.30551 -8.71409 -8.67900 -8.64094 -6.77508 -5.70414 -3.01422 0.22875 0.66801 1.71935 2.04232 2.59278 2.84224 3.19077 3.43774 3.48009 3.49104 3.50667 4.08498 4.28315 4.46105 4.51994 4.60979 4.63720 4.84907 4.90583 5.01064 5.10556 5.19069 5.26262 5.35098 5.38866 5.41258 5.62172 5.73459 5.75475 5.84643 5.89022 5.92539 6.02165 6.09153 6.13001 6.19003 6.35672 6.44175 6.49817 6.65835 6.70531 6.78358 6.91385 7.33481 7.47521 7.64683 7.75132 8.05274 8.18878 8.47523 9.11759 9.78320 10.69655 11.47205 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003226 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.000835 B = 8678.517994 C = 9545.419052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.091 0.909 4 N -0.709 5.709 5 C 0.559 3.441 6 O -0.506 6.506 7 C -0.118 4.118 8 C -0.068 4.068 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.135 4.135 12 C 0.187 3.813 13 N -0.331 5.331 14 C 0.008 3.992 15 C -0.071 4.071 16 N -0.234 5.234 17 N -0.001 5.001 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.613 5.613 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.130 3.870 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.397 0.603 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.192 0.808 39 H 0.188 0.812 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -4.343 24.153 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.109 0.891 4 N -0.359 5.359 5 C 0.343 3.657 6 O -0.380 6.380 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.143 4.143 10 C -0.099 4.099 11 C -0.156 4.156 12 C 0.092 3.908 13 N -0.113 5.113 14 C -0.140 4.140 15 C -0.224 4.224 16 N -0.105 5.105 17 N 0.020 4.980 18 C -0.167 4.167 19 C 0.051 3.949 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.564 5.564 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.231 0.769 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.209 0.791 39 H 0.205 0.795 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.001 -3.376 22.618 23.642 hybrid contribution 1.411 -0.479 0.175 1.500 sum -4.591 -3.855 22.793 23.568 Atomic orbital electron populations 1.22129 0.95802 1.01545 1.02079 1.21098 0.93189 0.97879 0.82976 0.89118 1.45957 1.66773 1.13821 1.09328 1.17778 0.78557 0.86551 0.82793 1.90827 1.48341 1.14441 1.84397 1.19892 0.96741 0.97307 0.98398 1.21253 0.99018 0.92039 0.96435 1.21224 0.97107 1.00587 0.95347 1.21135 0.94949 0.94353 0.99474 1.20847 1.02081 0.96992 0.95716 1.17447 0.93265 0.85082 0.94969 1.48086 1.26868 1.18636 1.17741 1.23449 0.94060 0.95322 1.01188 1.23264 1.04922 1.01369 0.92836 1.74479 1.03421 1.13257 1.19346 1.82728 1.16054 1.00646 0.98522 1.23819 1.01053 0.99444 0.92365 1.22204 0.91061 0.98517 0.83130 1.46000 1.03536 1.82399 1.01991 1.19027 0.89808 1.42847 0.83468 0.90287 1.24818 0.95921 1.02487 0.97118 1.69849 1.04714 1.55953 1.25934 0.86163 0.79090 0.77446 0.83483 1.21633 1.21782 1.20578 1.22483 0.89693 0.96621 0.90823 0.91423 0.92854 0.92858 0.76910 0.84141 0.84557 0.84412 0.84505 0.79091 0.79501 0.89600 0.95203 0.91782 0.93733 0.93906 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.31 37.16 0.35 -1.84 16 2 C 0.15 2.53 2.38 -67.93 -0.16 2.37 16 3 H 0.09 1.81 7.41 -51.93 -0.39 1.42 16 4 N -0.71 -10.44 5.05 -54.82 -0.28 -10.72 16 5 C 0.56 8.86 5.94 -12.43 -0.07 8.78 16 6 O -0.51 -9.92 14.13 5.30 0.07 -9.84 16 7 C -0.12 -1.48 5.66 -104.82 -0.59 -2.08 16 8 C -0.07 -0.59 9.70 -39.20 -0.38 -0.97 16 9 C -0.12 -0.79 10.03 -39.62 -0.40 -1.18 16 10 C -0.08 -0.48 10.03 -39.53 -0.40 -0.88 16 11 C -0.14 -1.07 9.47 -39.45 -0.37 -1.45 16 12 C 0.19 2.28 6.69 -83.31 -0.56 1.72 16 13 N -0.33 -4.77 3.81 -10.32 -0.04 -4.81 16 14 C 0.01 0.08 10.91 -16.72 -0.18 -0.10 16 15 C -0.07 -0.89 11.86 -18.04 -0.21 -1.11 16 16 N -0.23 -4.22 12.33 30.09 0.37 -3.85 16 17 N 0.00 -0.02 9.52 60.35 0.57 0.55 16 18 C -0.15 -2.76 3.47 -89.69 -0.31 -3.08 16 19 C 0.18 4.36 6.99 -2.84 -0.02 4.34 16 20 N -0.61 -16.40 3.70 -177.72 -0.66 -17.06 16 21 C -0.22 -6.53 10.70 -15.05 -0.16 -6.69 16 22 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -28.36 11.52 55.49 0.64 -27.72 16 25 Si 0.91 22.84 29.56 -169.99 -5.02 17.81 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.13 2.75 7.64 -2.97 -0.02 2.72 16 30 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.96 8.53 -40.82 -0.35 4.62 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.14 0.70 6.88 -52.49 -0.36 0.34 16 38 H 0.19 1.00 7.22 -52.49 -0.38 0.62 16 39 H 0.19 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.81 7.99 -51.93 -0.41 0.39 16 42 H 0.06 1.73 7.38 -51.93 -0.38 1.35 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -39.22 379.16 -8.23 -47.45 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.01 Total: 2.19 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.59 Total: 0.27 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.61 Total: -63.60 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.22 -8.23 -47.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970985798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.125 kcal (2) G-P(sol) polarization free energy of solvation -39.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds