Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39794 * 125.34292 * 2 1 4 4 C 1.30205 * 110.13304 * 179.83872 * 3 2 1 5 5 C 1.45971 * 107.58669 * 0.41411 * 4 3 2 6 6 C 1.39654 * 134.12083 * 179.76679 * 5 4 3 7 7 C 1.39505 * 117.94833 * 179.97438 * 6 5 4 8 8 C 1.47696 * 120.40712 * 180.02562 * 7 6 5 9 9 O 1.21574 * 119.99668 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99685 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99748 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46960 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.52143 * 29.58689 * 12 11 10 14 14 C 1.53003 * 117.44263 * 244.24313 * 12 11 10 15 15 H 1.09003 * 119.53921 * 4.11636 * 14 12 11 16 16 C 1.57693 * 116.11199 * 161.64150 * 14 12 11 17 17 N 1.48148 * 104.67558 * 87.30427 * 16 14 12 18 18 C 1.36937 * 127.83618 * 139.77124 * 17 16 14 19 19 H 1.08006 * 120.00147 * 344.34391 * 18 17 16 20 20 C 1.38808 * 119.99906 * 164.33942 * 18 17 16 21 21 N 1.31617 * 120.00217 * 350.57363 * 20 18 17 22 22 Si 1.86801 * 120.00163 * 170.57192 * 20 18 17 23 23 H 1.48507 * 109.47323 * 89.99912 * 22 20 18 24 24 H 1.48501 * 109.47520 * 209.99994 * 22 20 18 25 25 H 1.48499 * 109.47299 * 330.00364 * 22 20 18 26 26 C 1.48144 * 104.32452 * 319.77547 * 17 16 14 27 27 C 1.53004 * 117.44299 * 175.00247 * 12 11 10 28 28 H 1.09001 * 119.53882 * 355.88749 * 27 12 11 29 29 C 1.40180 * 119.18230 * 359.97438 * 7 6 5 30 30 N 1.31191 * 121.37601 * 0.02562 * 29 7 6 31 31 C 1.32925 * 121.84080 * 0.02562 * 30 29 7 32 32 H 1.08998 * 109.47078 * 269.69339 * 1 2 3 33 33 H 1.09008 * 109.46719 * 29.69232 * 1 2 3 34 34 H 1.08993 * 109.47097 * 149.68857 * 1 2 3 35 35 H 1.08003 * 126.20760 * 180.17678 * 4 3 2 36 36 H 1.07994 * 121.02660 * 359.95106 * 6 5 4 37 37 H 0.96994 * 120.00572 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47259 * 300.00172 * 11 10 8 39 39 H 1.09005 * 109.46467 * 60.00326 * 11 10 8 40 40 H 1.08998 * 110.92209 * 328.23140 * 16 14 12 41 41 H 1.08997 * 109.94081 * 205.88808 * 16 14 12 42 42 H 0.97004 * 120.00290 * 180.02562 * 21 20 18 43 43 H 1.08990 * 110.40939 * 280.80037 * 26 17 16 44 44 H 1.09006 * 110.40808 * 158.36395 * 26 17 16 45 45 H 1.08006 * 119.31290 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7987 0.0034 5 6 3.5907 -0.6597 -0.0041 6 6 4.6327 -1.5895 -0.0088 7 6 4.3001 -2.9443 -0.0153 8 6 5.3589 -3.9740 -0.0199 9 8 6.5287 -3.6430 -0.0185 10 7 5.0282 -5.2805 -0.0256 11 6 6.0784 -6.3020 -0.0308 12 6 5.4383 -7.6915 -0.0374 13 1 4.4648 -7.7578 -0.5232 14 6 5.6795 -8.5848 1.1812 15 1 6.2318 -8.1917 2.0348 16 6 4.6805 -9.7908 1.3663 17 7 5.2719 -10.8932 0.5726 18 6 5.3390 -12.2213 0.8994 19 1 5.1674 -12.5361 1.9182 20 6 5.6276 -13.1630 -0.0787 21 7 5.6534 -12.8087 -1.3461 22 14 5.9792 -14.9330 0.4036 23 1 4.7097 -15.7034 0.4194 24 1 6.9130 -15.5380 -0.5799 25 1 6.5945 -14.9651 1.7548 26 6 5.7742 -10.2327 -0.6546 27 6 6.3719 -8.8974 -0.1617 28 1 7.4401 -8.7371 -0.3084 29 6 2.9485 -3.3163 -0.0163 30 7 1.9928 -2.4176 -0.0118 31 6 2.2554 -1.1146 -0.0065 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3633 0.8928 -0.5091 34 1 -0.3633 -0.8871 -0.5186 35 1 4.3744 1.4723 0.0070 36 1 5.6642 -1.2696 -0.0078 37 1 4.0949 -5.5447 -0.0264 38 1 6.6967 -6.1829 -0.9205 39 1 6.6975 -6.1909 0.8595 40 1 3.6905 -9.5380 0.9867 41 1 4.6237 -10.0683 2.4188 42 1 5.8547 -13.4669 -2.0297 43 1 4.9551 -10.0489 -1.3497 44 1 6.5446 -10.8427 -1.1264 45 1 2.6886 -4.3646 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978911383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 135.755869 kcal Electronic energy + Delta-G solvation = -27633.420965 eV Core-core repulsion = 23654.688188 eV Total energy + Delta-G solvation = -3978.732777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06784 -40.05032 -38.75829 -38.04414 -35.10737 -34.30070 -33.42091 -32.16166 -31.16072 -30.53004 -27.81626 -27.09342 -26.90316 -25.11910 -24.35081 -23.69315 -21.41570 -21.14798 -21.01245 -19.99058 -19.29580 -18.20532 -18.13726 -17.13248 -16.81138 -16.35178 -16.04153 -15.57440 -15.36280 -14.85615 -14.63503 -14.41979 -14.04277 -13.99420 -13.78627 -13.54360 -13.50322 -13.12200 -12.99006 -12.84097 -12.69755 -12.63555 -11.88784 -11.62133 -11.26260 -11.11499 -10.94404 -10.83355 -10.66590 -10.48568 -10.28490 -10.14104 -9.85876 -9.75056 -9.56826 -9.46933 -9.17627 -9.04298 -8.75545 -8.64531 -6.88587 -5.81871 -3.15934 0.27877 0.38814 1.62213 1.92840 2.60199 2.93359 3.36824 3.42706 3.44675 3.44834 3.59532 3.76700 4.07765 4.13077 4.33509 4.38430 4.45390 4.60834 4.76680 4.79201 4.88601 4.91024 5.02914 5.09485 5.27692 5.37989 5.42050 5.48472 5.54756 5.68728 5.76647 5.78288 5.88374 5.91005 5.94114 6.21808 6.23446 6.28070 6.52405 6.64323 6.67716 6.88498 6.88831 7.31867 7.34217 7.36659 7.51335 7.70150 8.02709 8.19058 9.09151 9.72142 10.49022 11.32523 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.001722 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.538622 B =16256.206356 C =16905.411774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.392 5.392 3 N -0.241 5.241 4 C 0.097 3.903 5 C -0.239 4.239 6 C 0.074 3.926 7 C -0.232 4.232 8 C 0.569 3.431 9 O -0.540 6.540 10 N -0.718 5.718 11 C 0.155 3.845 12 C -0.155 4.155 13 H 0.103 0.897 14 C -0.172 4.172 15 H 0.107 0.893 16 C 0.155 3.845 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.184 3.816 27 C -0.161 4.161 28 H 0.102 0.898 29 C 0.207 3.793 30 N -0.504 5.504 31 C 0.329 3.671 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.206 0.794 36 H 0.156 0.844 37 H 0.400 0.600 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.089 0.911 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 27.035 1.815 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.182 5.182 3 N -0.052 5.052 4 C -0.102 4.102 5 C -0.249 4.249 6 C 0.045 3.955 7 C -0.239 4.239 8 C 0.355 3.645 9 O -0.419 6.419 10 N -0.369 5.369 11 C 0.032 3.968 12 C -0.174 4.174 13 H 0.121 0.879 14 C -0.191 4.191 15 H 0.125 0.875 16 C 0.029 3.971 17 N -0.317 5.317 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.058 3.942 27 C -0.182 4.182 28 H 0.120 0.880 29 C 0.036 3.964 30 N -0.218 5.218 31 C 0.090 3.910 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.223 0.777 36 H 0.173 0.827 37 H 0.236 0.764 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.107 0.893 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.861 27.779 1.723 28.921 hybrid contribution 0.999 -1.423 0.183 1.749 sum -6.861 26.356 1.906 27.301 Atomic orbital electron populations 1.21883 0.73022 1.04690 1.03551 1.48164 1.06536 1.00005 1.63490 1.76761 1.02749 1.07348 1.18374 1.25167 0.94915 0.92517 0.97587 1.20471 0.94008 0.94860 1.15603 1.21178 0.99376 0.89972 0.84980 1.20673 0.94905 0.94570 1.13795 1.17784 0.87943 0.82201 0.76544 1.90791 1.19159 1.81561 1.50346 1.45931 1.10853 1.05343 1.74782 1.20926 0.89108 0.84413 1.02342 1.22557 1.01136 0.90011 1.03681 0.87852 1.24723 1.03689 0.99379 0.91358 0.87473 1.21718 0.92716 0.86845 0.95842 1.45145 1.65511 1.02609 1.18485 1.18980 1.42761 0.80209 0.93610 0.90606 1.24893 1.02186 0.98090 0.95095 1.69896 1.53962 1.33480 0.98795 0.86127 0.77828 0.84318 0.77503 1.21461 1.21534 1.20562 1.21078 0.97280 0.87091 0.88767 1.24181 0.97442 0.95396 1.01177 0.87987 1.22912 0.86821 0.98426 0.88265 1.66685 1.37330 0.98498 1.19263 1.19151 0.88710 0.88191 0.94972 0.90816 0.89227 0.88930 0.77701 0.82667 0.76413 0.90867 0.91179 0.95543 0.93341 0.93542 0.95825 0.89271 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.63 11.43 59.85 0.68 1.32 16 2 N -0.39 -3.63 4.03 -67.17 -0.27 -3.90 16 3 N -0.24 -2.18 12.39 31.87 0.39 -1.78 16 4 C 0.10 0.70 12.30 -15.15 -0.19 0.52 16 5 C -0.24 -2.19 6.36 -105.20 -0.67 -2.86 16 6 C 0.07 0.67 9.76 -38.58 -0.38 0.29 16 7 C -0.23 -2.25 5.89 -104.83 -0.62 -2.87 16 8 C 0.57 6.64 7.77 -12.40 -0.10 6.55 16 9 O -0.54 -8.12 16.40 5.30 0.09 -8.03 16 10 N -0.72 -7.52 5.51 -61.30 -0.34 -7.86 16 11 C 0.15 1.93 5.95 -4.04 -0.02 1.91 16 12 C -0.15 -2.21 5.34 -90.62 -0.48 -2.69 16 13 H 0.10 1.45 8.04 -51.93 -0.42 1.03 16 14 C -0.17 -2.86 7.03 -87.38 -0.61 -3.47 16 15 H 0.11 1.65 8.12 -51.93 -0.42 1.23 16 16 C 0.16 3.12 7.10 -0.57 0.00 3.12 16 17 N -0.59 -14.88 3.38 -166.74 -0.56 -15.45 16 18 C -0.23 -6.25 10.35 -15.06 -0.16 -6.40 16 19 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 20 C -0.01 -0.15 5.39 -17.43 -0.09 -0.25 16 21 N -0.92 -26.44 10.88 55.49 0.60 -25.84 16 22 Si 0.91 21.69 29.56 -169.99 -5.03 16.66 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.18 4.27 5.70 -2.41 -0.01 4.26 16 27 C -0.16 -2.92 6.77 -89.22 -0.60 -3.52 16 28 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 29 C 0.21 1.81 10.69 -17.10 -0.18 1.63 16 30 N -0.50 -5.14 10.37 -12.03 -0.12 -5.27 16 31 C 0.33 3.39 7.96 -156.09 -1.24 2.15 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.21 0.62 8.06 -52.48 -0.42 0.19 16 36 H 0.16 1.20 7.72 -52.49 -0.41 0.80 16 37 H 0.40 3.21 6.44 -40.82 -0.26 2.94 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.92 7.94 -51.93 -0.41 0.50 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 2.34 6.53 -51.93 -0.34 2.01 16 45 H 0.17 1.00 6.39 -52.48 -0.34 0.67 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -34.63 380.16 -10.13 -44.76 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.95 Total: 1.30 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -4.68 Total: -0.33 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.30 Total: -60.09 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.63 -10.13 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978911383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.521 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds