Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40256 * 126.66144 * 2 1 4 4 N 1.28662 * 109.42415 * 180.02562 * 3 2 1 5 5 C 1.35400 * 110.10569 * 0.02562 * 4 3 2 6 6 C 1.40109 * 133.03041 * 179.97438 * 5 4 3 7 7 C 1.37603 * 120.15391 * 180.27455 * 6 5 4 8 8 C 1.38487 * 120.79764 * 359.38024 * 7 6 5 9 9 C 1.39216 * 120.27300 * 0.65652 * 8 7 6 10 10 C 1.47526 * 120.24165 * 179.64032 * 9 8 7 11 11 O 1.21598 * 119.99751 * 230.04858 * 10 9 8 12 12 N 1.34771 * 120.00404 * 50.04818 * 10 9 8 13 13 C 1.47168 * 120.70884 * 5.28336 * 12 10 9 14 14 C 1.54322 * 107.80422 * 132.68117 * 13 12 10 15 15 H 1.09006 * 112.53253 * 182.37622 * 14 13 12 16 16 C 1.54549 * 107.98381 * 306.73803 * 14 13 12 17 17 C 1.54274 * 104.84609 * 89.01106 * 16 14 13 18 18 C 1.54543 * 104.85418 * 0.02562 * 17 16 14 19 19 H 1.08995 * 112.68359 * 146.67552 * 18 17 16 20 20 C 1.47167 * 120.71337 * 185.56038 * 12 10 9 21 21 N 1.48305 * 107.10304 * 58.61842 * 14 13 12 22 22 C 1.36931 * 128.07914 * 106.54309 * 21 14 13 23 23 H 1.07997 * 120.00443 * 167.87464 * 22 21 14 24 24 C 1.38815 * 119.99843 * 347.87297 * 22 21 14 25 25 N 1.31618 * 119.99987 * 347.31476 * 24 22 21 26 26 Si 1.86808 * 119.99800 * 167.31148 * 24 22 21 27 27 H 1.48501 * 109.46895 * 94.98187 * 26 24 22 28 28 H 1.48496 * 109.46762 * 214.97916 * 26 24 22 29 29 H 1.48503 * 109.47121 * 334.98174 * 26 24 22 30 30 C 1.36974 * 126.66886 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47750 * 95.09559 * 1 2 3 32 32 H 1.09001 * 109.46845 * 215.09469 * 1 2 3 33 33 H 1.09002 * 109.47272 * 335.08797 * 1 2 3 34 34 H 1.08006 * 119.92428 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.60205 * 179.70425 * 7 6 5 36 36 H 1.08001 * 119.86190 * 180.29428 * 8 7 6 37 37 H 1.08998 * 109.75078 * 252.38610 * 13 12 10 38 38 H 1.09002 * 109.74809 * 13.11967 * 13 12 10 39 39 H 1.09004 * 110.36231 * 207.85609 * 16 14 13 40 40 H 1.09002 * 110.36073 * 330.16768 * 16 14 13 41 41 H 1.09005 * 110.36130 * 241.16325 * 17 16 14 42 42 H 1.09000 * 110.36366 * 118.84994 * 17 16 14 43 43 H 1.09000 * 109.74724 * 346.88299 * 20 12 10 44 44 H 1.08996 * 109.74967 * 107.56839 * 20 12 10 45 45 H 0.96995 * 119.99577 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1251 0.0000 4 7 3.5313 0.7438 -0.0005 5 6 3.5990 -0.6085 -0.0015 6 6 4.6698 -1.5121 -0.0028 7 6 4.4306 -2.8672 -0.0093 8 6 3.1360 -3.3588 -0.0017 9 6 2.0531 -2.4839 -0.0011 10 6 0.6742 -3.0083 -0.0010 11 8 -0.1346 -2.5921 -0.8079 12 7 0.3109 -3.9488 0.8934 13 6 1.2403 -4.3802 1.9498 14 6 0.4676 -4.3839 3.2856 15 1 1.0985 -4.6541 4.1324 16 6 -0.1842 -2.9939 3.4636 17 6 -1.5617 -3.1125 2.7791 18 6 -1.6175 -4.5636 2.2502 19 1 -2.6239 -4.9813 2.2745 20 6 -1.0215 -4.5706 0.8310 21 7 -0.6795 -5.3098 3.1233 22 6 -0.8359 -6.5619 3.6552 23 1 -1.7997 -7.0478 3.6183 24 6 0.2444 -7.2067 4.2419 25 7 1.4624 -6.7378 4.0715 26 14 -0.0305 -8.7398 5.2732 27 1 0.1618 -9.9458 4.4282 28 1 0.9412 -8.7619 6.3958 29 1 -1.4131 -8.7304 5.8151 30 6 2.2830 -1.0987 -0.0005 31 1 -0.3634 -0.0913 -1.0235 32 1 -0.3633 -0.8409 0.5909 33 1 -0.3634 0.9321 0.4329 34 1 5.6852 -1.1442 -0.0028 35 1 5.2627 -3.5557 -0.0151 36 1 2.9657 -4.4253 -0.0021 37 1 1.6075 -5.3827 1.7304 38 1 2.0780 -3.6853 2.0096 39 1 -0.3051 -2.7645 4.5224 40 1 0.4175 -2.2275 2.9750 41 1 -1.6373 -2.4045 1.9538 42 1 -2.3600 -2.9414 3.5012 43 1 -1.6630 -4.0003 0.1592 44 1 -0.9328 -5.5963 0.4731 45 1 2.2172 -7.1886 4.4811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029611402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 127.618089 kcal Electronic energy + Delta-G solvation = -31378.109104 eV Core-core repulsion = 27399.023447 eV Total energy + Delta-G solvation = -3979.085658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16042 -40.21842 -38.16005 -37.24512 -34.53186 -33.90752 -32.61327 -31.22031 -30.41565 -30.23896 -29.37548 -27.52213 -26.40743 -24.55843 -24.01945 -23.63204 -22.66310 -21.94575 -19.90200 -19.72767 -18.77360 -18.12398 -17.35397 -16.72453 -16.19541 -16.09139 -15.55908 -15.46834 -15.29276 -14.70601 -14.52287 -13.84522 -13.68157 -13.46970 -13.31600 -13.15969 -13.02906 -12.79467 -12.43382 -12.28072 -12.15008 -11.94760 -11.88363 -11.68472 -11.54711 -11.20093 -11.09983 -10.98479 -10.86354 -10.66475 -10.50724 -10.16058 -9.98531 -9.74175 -9.68542 -9.60646 -8.97665 -8.86239 -8.36212 -8.19714 -6.99536 -5.96330 -3.28498 0.26039 1.20390 2.00942 2.09078 2.87016 3.28543 3.30533 3.36683 3.37367 3.59342 4.00618 4.32780 4.43490 4.52733 4.70005 4.83705 5.04371 5.06762 5.20703 5.21058 5.23345 5.47363 5.52997 5.56046 5.60061 5.64948 5.69795 5.78696 5.82676 5.88965 5.97186 6.11251 6.15541 6.19053 6.25264 6.39627 6.42597 6.46388 6.50193 6.57483 6.58871 6.74849 6.78818 7.10005 7.33003 7.54297 7.83441 7.94233 8.00555 8.39034 8.94249 9.57002 10.31548 11.17208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.003989 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.071563 B = 7018.302662 C = 7830.701655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 N -0.013 5.013 4 N -0.221 5.221 5 C -0.027 4.027 6 C -0.019 4.019 7 C -0.138 4.138 8 C -0.028 4.028 9 C -0.122 4.122 10 C 0.549 3.451 11 O -0.559 6.559 12 N -0.578 5.578 13 C 0.099 3.901 14 C 0.168 3.832 15 H 0.123 0.877 16 C -0.135 4.135 17 C -0.123 4.123 18 C 0.135 3.865 19 H 0.080 0.920 20 C 0.100 3.900 21 N -0.583 5.583 22 C -0.226 4.226 23 H 0.078 0.922 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.289 1.289 29 H -0.281 1.281 30 C 0.125 3.875 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 8.076 -6.301 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.176 5.176 3 N 0.007 4.993 4 N -0.099 5.099 5 C -0.151 4.151 6 C -0.041 4.041 7 C -0.159 4.159 8 C -0.050 4.050 9 C -0.130 4.130 10 C 0.337 3.663 11 O -0.440 6.440 12 N -0.308 5.308 13 C -0.024 4.024 14 C 0.060 3.940 15 H 0.140 0.860 16 C -0.174 4.174 17 C -0.162 4.162 18 C 0.026 3.974 19 H 0.098 0.902 20 C -0.024 4.024 21 N -0.304 5.304 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.199 4.199 25 N -0.561 5.561 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.002 3.998 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.155 9.610 -6.539 11.822 hybrid contribution -0.245 -1.909 0.492 1.987 sum 1.910 7.701 -6.047 9.976 Atomic orbital electron populations 1.22159 0.72046 1.04443 1.04909 1.50000 1.08174 1.03117 1.56339 1.81596 0.94055 1.07777 1.15866 1.74820 1.11455 1.10299 1.13356 1.19864 0.92971 0.90236 1.12023 1.20564 0.97450 0.91374 0.94747 1.20947 0.97040 0.94723 1.03170 1.21450 0.91133 1.00030 0.92407 1.18883 0.95104 0.89244 1.09761 1.18089 0.86632 0.80100 0.81479 1.90733 1.52570 1.60396 1.40301 1.48219 1.16388 1.37348 1.28877 1.22882 0.91058 1.00043 0.88442 1.21988 0.90361 0.85973 0.95683 0.85999 1.22626 0.96383 0.99085 0.99349 1.22479 0.97517 0.97253 0.98984 1.21974 0.94676 0.91748 0.88987 0.90165 1.22472 0.82975 0.97281 0.99690 1.45197 1.16879 1.14131 1.54214 1.19023 0.95082 0.90572 1.30726 0.90419 1.24750 0.94922 0.98636 1.01581 1.69819 0.97472 1.41689 1.47105 0.86137 0.77352 0.82482 0.79972 1.21615 1.21557 1.20631 1.18971 0.90980 0.89168 1.00705 0.89269 0.88893 0.89139 0.84125 0.83805 0.83698 0.89627 0.91755 0.92589 0.93622 0.92927 0.92529 0.90476 0.91558 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.35 9.85 59.85 0.59 1.94 16 2 N -0.38 -5.85 4.10 -65.28 -0.27 -6.12 16 3 N -0.01 -0.21 13.72 60.35 0.83 0.62 16 4 N -0.22 -3.48 12.40 32.15 0.40 -3.09 16 5 C -0.03 -0.39 7.26 -84.76 -0.62 -1.01 16 6 C -0.02 -0.22 10.09 -39.11 -0.39 -0.61 16 7 C -0.14 -1.44 9.98 -39.72 -0.40 -1.84 16 8 C -0.03 -0.36 7.72 -39.13 -0.30 -0.66 16 9 C -0.12 -1.86 4.73 -104.93 -0.50 -2.36 16 10 C 0.55 9.23 6.02 -12.48 -0.08 9.16 16 11 O -0.56 -10.21 13.85 5.28 0.07 -10.13 16 12 N -0.58 -9.96 2.24 -172.45 -0.39 -10.35 16 13 C 0.10 1.81 4.62 -2.99 -0.01 1.80 16 14 C 0.17 3.43 3.15 -65.43 -0.21 3.22 16 15 H 0.12 2.87 6.29 -51.93 -0.33 2.54 16 16 C -0.14 -2.41 6.19 -25.25 -0.16 -2.56 16 17 C -0.12 -2.06 6.18 -25.25 -0.16 -2.21 16 18 C 0.13 2.47 4.32 -65.65 -0.28 2.19 16 19 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 20 C 0.10 1.75 5.92 -3.19 -0.02 1.73 16 21 N -0.58 -12.84 2.81 -152.33 -0.43 -13.27 16 22 C -0.23 -5.57 10.37 -15.06 -0.16 -5.73 16 23 H 0.08 1.89 7.86 -52.49 -0.41 1.47 16 24 C 0.00 -0.05 5.40 -17.43 -0.09 -0.14 16 25 N -0.91 -23.20 10.58 55.49 0.59 -22.62 16 26 Si 0.91 20.19 29.57 -169.99 -5.03 15.17 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 C 0.13 1.96 6.82 -83.92 -0.57 1.39 16 31 H 0.09 1.13 7.87 -51.93 -0.41 0.72 16 32 H 0.09 1.30 6.22 -51.93 -0.32 0.97 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.15 1.76 7.44 -52.49 -0.39 1.37 16 37 H 0.09 1.77 7.97 -51.93 -0.41 1.36 16 38 H 0.06 1.08 5.59 -51.93 -0.29 0.79 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 41 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.29 7.08 -51.93 -0.37 0.92 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -28.34 356.35 -8.04 -36.39 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.84 Total: 3.72 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.35 Total: 4.30 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.73 Total: -54.81 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.34 -8.04 -36.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029611402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.003 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds