Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40256 * 126.66144 * 2 1 4 4 N 1.28662 * 109.42415 * 180.02562 * 3 2 1 5 5 C 1.35400 * 110.10569 * 0.02562 * 4 3 2 6 6 C 1.40109 * 133.03041 * 179.97438 * 5 4 3 7 7 C 1.37603 * 120.15391 * 180.27455 * 6 5 4 8 8 C 1.38487 * 120.79764 * 359.38024 * 7 6 5 9 9 C 1.39216 * 120.27300 * 0.65652 * 8 7 6 10 10 C 1.47526 * 120.24165 * 179.64032 * 9 8 7 11 11 O 1.21598 * 119.99751 * 230.04858 * 10 9 8 12 12 N 1.34771 * 120.00404 * 50.04818 * 10 9 8 13 13 C 1.47168 * 120.70884 * 5.28336 * 12 10 9 14 14 C 1.54322 * 107.80422 * 132.68117 * 13 12 10 15 15 H 1.09006 * 112.53253 * 182.37622 * 14 13 12 16 16 C 1.54549 * 107.98381 * 306.73803 * 14 13 12 17 17 C 1.54274 * 104.84609 * 89.01106 * 16 14 13 18 18 C 1.54543 * 104.85418 * 0.02562 * 17 16 14 19 19 H 1.08995 * 112.68359 * 146.67552 * 18 17 16 20 20 C 1.47167 * 120.71337 * 185.56038 * 12 10 9 21 21 N 1.48305 * 107.10304 * 58.61842 * 14 13 12 22 22 C 1.36931 * 128.07914 * 106.54309 * 21 14 13 23 23 H 1.07997 * 120.00443 * 167.87464 * 22 21 14 24 24 C 1.38815 * 119.99843 * 347.87297 * 22 21 14 25 25 N 1.31618 * 119.99987 * 347.31476 * 24 22 21 26 26 Si 1.86808 * 119.99800 * 167.31148 * 24 22 21 27 27 H 1.48501 * 109.46895 * 94.98187 * 26 24 22 28 28 H 1.48496 * 109.46762 * 214.97916 * 26 24 22 29 29 H 1.48503 * 109.47121 * 334.98174 * 26 24 22 30 30 C 1.36974 * 126.66886 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47750 * 95.09559 * 1 2 3 32 32 H 1.09001 * 109.46845 * 215.09469 * 1 2 3 33 33 H 1.09002 * 109.47272 * 335.08797 * 1 2 3 34 34 H 1.08006 * 119.92428 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.60205 * 179.70425 * 7 6 5 36 36 H 1.08001 * 119.86190 * 180.29428 * 8 7 6 37 37 H 1.08998 * 109.75078 * 252.38610 * 13 12 10 38 38 H 1.09002 * 109.74809 * 13.11967 * 13 12 10 39 39 H 1.09004 * 110.36231 * 207.85609 * 16 14 13 40 40 H 1.09002 * 110.36073 * 330.16768 * 16 14 13 41 41 H 1.09005 * 110.36130 * 241.16325 * 17 16 14 42 42 H 1.09000 * 110.36366 * 118.84994 * 17 16 14 43 43 H 1.09000 * 109.74724 * 346.88299 * 20 12 10 44 44 H 1.08996 * 109.74967 * 107.56839 * 20 12 10 45 45 H 0.96995 * 119.99577 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1251 0.0000 4 7 3.5313 0.7438 -0.0005 5 6 3.5990 -0.6085 -0.0015 6 6 4.6698 -1.5121 -0.0028 7 6 4.4306 -2.8672 -0.0093 8 6 3.1360 -3.3588 -0.0017 9 6 2.0531 -2.4839 -0.0011 10 6 0.6742 -3.0083 -0.0010 11 8 -0.1346 -2.5921 -0.8079 12 7 0.3109 -3.9488 0.8934 13 6 1.2403 -4.3802 1.9498 14 6 0.4676 -4.3839 3.2856 15 1 1.0985 -4.6541 4.1324 16 6 -0.1842 -2.9939 3.4636 17 6 -1.5617 -3.1125 2.7791 18 6 -1.6175 -4.5636 2.2502 19 1 -2.6239 -4.9813 2.2745 20 6 -1.0215 -4.5706 0.8310 21 7 -0.6795 -5.3098 3.1233 22 6 -0.8359 -6.5619 3.6552 23 1 -1.7997 -7.0478 3.6183 24 6 0.2444 -7.2067 4.2419 25 7 1.4624 -6.7378 4.0715 26 14 -0.0305 -8.7398 5.2732 27 1 0.1618 -9.9458 4.4282 28 1 0.9412 -8.7619 6.3958 29 1 -1.4131 -8.7304 5.8151 30 6 2.2830 -1.0987 -0.0005 31 1 -0.3634 -0.0913 -1.0235 32 1 -0.3633 -0.8409 0.5909 33 1 -0.3634 0.9321 0.4329 34 1 5.6852 -1.1442 -0.0028 35 1 5.2627 -3.5557 -0.0151 36 1 2.9657 -4.4253 -0.0021 37 1 1.6075 -5.3827 1.7304 38 1 2.0780 -3.6853 2.0096 39 1 -0.3051 -2.7645 4.5224 40 1 0.4175 -2.2275 2.9750 41 1 -1.6373 -2.4045 1.9538 42 1 -2.3600 -2.9414 3.5012 43 1 -1.6630 -4.0003 0.1592 44 1 -0.9328 -5.5963 0.4731 45 1 2.2172 -7.1886 4.4811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029611402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 111.915206 kcal Electronic energy + Delta-G solvation = -31378.790032 eV Core-core repulsion = 27399.023447 eV Total energy + Delta-G solvation = -3979.766586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.25505 -41.61881 -39.53924 -38.33965 -35.64064 -35.41614 -34.28989 -32.53633 -31.63345 -31.34891 -31.03839 -28.62158 -27.85155 -25.95471 -25.46610 -25.03219 -23.71163 -23.16774 -21.38847 -21.08454 -20.28246 -19.31115 -18.61659 -17.95073 -17.58690 -17.34167 -16.90253 -16.79523 -16.44472 -16.34956 -15.68830 -15.44022 -14.94696 -14.73422 -14.61711 -14.51506 -14.44009 -13.98307 -13.57718 -13.49606 -13.48551 -13.34802 -13.10413 -12.98610 -12.82776 -12.78158 -12.65851 -12.55254 -12.22179 -12.02632 -11.83976 -11.72096 -11.52871 -11.41442 -11.17539 -10.99762 -10.65102 -9.98317 -9.77173 -9.35908 -8.71876 -7.83913 -5.15399 -0.79059 0.17095 0.89318 1.03989 1.50711 1.54520 1.60770 1.60888 1.99679 2.52232 2.54951 2.95619 3.33520 3.36543 3.42135 3.49022 3.65582 3.81070 4.07243 4.08097 4.11819 4.17679 4.22602 4.28261 4.30070 4.42978 4.49514 4.52547 4.61946 4.68601 4.72916 4.80007 4.83502 4.94717 5.01436 5.04646 5.09482 5.17373 5.23614 5.30317 5.32574 5.43532 5.54885 5.59337 5.62693 5.79738 6.23169 6.45149 6.82286 7.04381 7.09886 7.74506 8.52295 9.27986 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.003989 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.071563 B = 7018.302662 C = 7830.701655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.388 5.388 3 N -0.030 5.030 4 N -0.232 5.232 5 C -0.042 4.042 6 C -0.007 4.007 7 C -0.125 4.125 8 C -0.022 4.022 9 C -0.149 4.149 10 C 0.556 3.444 11 O -0.574 6.574 12 N -0.579 5.579 13 C 0.121 3.879 14 C 0.162 3.838 15 H 0.089 0.911 16 C -0.126 4.126 17 C -0.112 4.112 18 C 0.131 3.869 19 H 0.087 0.913 20 C 0.107 3.893 21 N -0.602 5.602 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.045 4.045 25 N -0.930 5.930 26 Si 0.963 3.037 27 H -0.292 1.292 28 H -0.296 1.296 29 H -0.278 1.278 30 C 0.108 3.892 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 8.524 -6.728 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.182 5.182 3 N -0.009 5.009 4 N -0.110 5.110 5 C -0.167 4.167 6 C -0.029 4.029 7 C -0.146 4.146 8 C -0.044 4.044 9 C -0.157 4.157 10 C 0.345 3.655 11 O -0.456 6.456 12 N -0.309 5.309 13 C -0.003 4.003 14 C 0.055 3.945 15 H 0.107 0.893 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.024 3.976 19 H 0.105 0.895 20 C -0.017 4.017 21 N -0.323 5.323 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.240 4.240 25 N -0.577 5.577 26 Si 0.793 3.207 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.203 1.203 30 C -0.015 4.015 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.192 0.808 35 H 0.202 0.798 36 H 0.167 0.833 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.956 10.088 -6.983 12.620 hybrid contribution -0.468 -2.062 0.580 2.193 sum 2.488 8.026 -6.404 10.564 Atomic orbital electron populations 1.22225 0.71188 1.05244 1.04817 1.50180 1.08765 1.02991 1.56218 1.81534 0.94316 1.08160 1.16917 1.74768 1.11577 1.11042 1.13610 1.20325 0.93675 0.90157 1.12549 1.21047 0.98196 0.91158 0.92537 1.21363 0.97032 0.95039 1.01175 1.21712 0.91729 1.00020 0.90904 1.18806 0.94627 0.89500 1.12778 1.18291 0.87260 0.79291 0.80645 1.90717 1.53418 1.60738 1.40732 1.48134 1.16064 1.37757 1.28969 1.22470 0.91213 0.98987 0.87644 1.21907 0.90020 0.86977 0.95610 0.89298 1.22506 0.96907 0.97542 0.99546 1.22389 0.97056 0.96226 0.99451 1.22144 0.94373 0.92268 0.88857 0.89513 1.22318 0.83429 0.96755 0.99234 1.45334 1.18120 1.13823 1.55066 1.19240 0.94950 0.91628 1.30517 0.90662 1.25313 0.94996 1.00884 1.02842 1.69955 0.97640 1.42410 1.47730 0.85307 0.76962 0.79974 0.78413 1.21902 1.22252 1.20307 1.19204 0.91664 0.89353 1.01328 0.89409 0.90008 0.86709 0.80800 0.79807 0.83277 0.92272 0.90246 0.92735 0.92825 0.91616 0.91519 0.89334 0.93056 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 9.85 127.77 1.26 3.87 16 2 N -0.39 -11.52 4.10 -360.44 -1.48 -12.99 16 3 N -0.03 -0.92 13.72 37.02 0.51 -0.41 16 4 N -0.23 -7.04 12.40 -52.20 -0.65 -7.69 16 5 C -0.04 -1.17 7.26 39.58 0.29 -0.88 16 6 C -0.01 -0.14 10.09 22.57 0.23 0.08 16 7 C -0.13 -2.16 9.98 22.18 0.22 -1.94 16 8 C -0.02 -0.50 7.72 22.56 0.17 -0.33 16 9 C -0.15 -4.36 4.73 -20.06 -0.09 -4.45 16 10 C 0.56 18.19 6.02 86.69 0.52 18.71 16 11 O -0.57 -20.50 13.85 -4.02 -0.06 -20.56 16 12 N -0.58 -19.58 2.24 -817.79 -1.83 -21.41 16 13 C 0.12 4.38 4.62 86.70 0.40 4.78 16 14 C 0.16 6.66 3.15 45.62 0.14 6.80 16 15 H 0.09 4.28 6.29 -2.38 -0.01 4.26 16 16 C -0.13 -4.37 6.19 31.55 0.20 -4.17 16 17 C -0.11 -3.58 6.18 31.55 0.20 -3.39 16 18 C 0.13 4.72 4.32 45.49 0.20 4.92 16 19 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 20 C 0.11 3.69 5.92 86.57 0.51 4.20 16 21 N -0.60 -26.56 2.81 -635.86 -1.79 -28.35 16 22 C -0.23 -11.64 10.37 84.04 0.87 -10.77 16 23 H 0.08 3.67 7.86 -2.91 -0.02 3.65 16 24 C -0.05 -2.29 5.40 84.86 0.46 -1.83 16 25 N -0.93 -47.92 10.58 21.65 0.23 -47.69 16 26 Si 0.96 41.85 29.57 68.60 2.03 43.88 16 27 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 28 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 29 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 30 C 0.11 3.25 6.82 39.41 0.27 3.52 16 31 H 0.09 2.17 7.87 -2.39 -0.02 2.15 16 32 H 0.08 2.20 6.22 -2.39 -0.01 2.19 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.15 3.35 7.44 -2.91 -0.02 3.33 16 37 H 0.06 2.47 7.97 -2.39 -0.02 2.45 16 38 H 0.08 2.61 5.59 -2.39 -0.01 2.60 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.77 7.85 -2.39 -0.02 1.75 16 41 H 0.07 1.94 7.84 -2.38 -0.02 1.92 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 2.86 7.08 -2.39 -0.02 2.84 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.25 12.69 8.31 -92.71 -0.77 11.92 16 Total: -1.00 -61.56 356.35 3.83 -57.73 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.03 Total: 18.37 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 5.84 Total: 19.12 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.01 Total: -118.54 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -61.56 3.83 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029611402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.647 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds