Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39804 * 125.33980 * 2 1 4 4 C 1.30200 * 110.13095 * 179.97438 * 3 2 1 5 5 C 1.45968 * 107.58758 * 0.26834 * 4 3 2 6 6 C 1.39654 * 134.11413 * 179.70703 * 5 4 3 7 7 C 1.39512 * 117.94940 * 180.02562 * 6 5 4 8 8 C 1.47686 * 120.40929 * 179.97438 * 7 6 5 9 9 O 1.21571 * 120.00394 * 6.73335 * 8 7 6 10 10 N 1.34775 * 119.99839 * 186.72936 * 8 7 6 11 11 C 1.47286 * 136.54435 * 5.61497 * 10 8 7 12 12 C 1.54084 * 87.60961 * 151.34465 * 11 10 8 13 13 H 1.09000 * 115.04706 * 141.62772 * 12 11 10 14 14 C 1.53070 * 111.39321 * 273.97667 * 12 11 10 15 15 C 1.52006 * 109.68923 * 142.51499 * 14 12 11 16 16 N 1.46541 * 108.10491 * 301.56158 * 15 14 12 17 17 C 1.36941 * 119.73802 * 236.29597 * 16 15 14 18 18 H 1.07997 * 119.99601 * 25.73173 * 17 16 15 19 19 C 1.38807 * 119.99893 * 205.72931 * 17 16 15 20 20 N 1.31616 * 120.00294 * 15.67702 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 195.67719 * 19 17 16 22 22 H 1.48507 * 109.47066 * 89.99996 * 21 19 17 23 23 H 1.48500 * 109.47232 * 209.99572 * 21 19 17 24 24 H 1.48497 * 109.47153 * 330.00318 * 21 19 17 25 25 C 1.45697 * 120.52517 * 56.32312 * 16 15 14 26 26 C 1.46473 * 136.54305 * 185.23462 * 10 8 7 27 27 H 1.08992 * 111.43674 * 96.40595 * 26 10 8 28 28 C 1.40182 * 119.17734 * 0.02562 * 7 6 5 29 29 N 1.31191 * 121.37756 * 359.56525 * 28 7 6 30 30 C 1.32926 * 121.84430 * 0.69071 * 29 28 7 31 31 H 1.09006 * 109.46865 * 90.02217 * 1 2 3 32 32 H 1.08998 * 109.46966 * 210.02349 * 1 2 3 33 33 H 1.09000 * 109.47208 * 330.02266 * 1 2 3 34 34 H 1.08002 * 126.20653 * 179.97438 * 4 3 2 35 35 H 1.08002 * 121.02969 * 0.05126 * 6 5 4 36 36 H 1.08998 * 113.52930 * 266.02885 * 11 10 8 37 37 H 1.09006 * 113.53203 * 36.66269 * 11 10 8 38 38 H 1.09000 * 109.51053 * 262.32278 * 14 12 11 39 39 H 1.09004 * 109.51300 * 22.47897 * 14 12 11 40 40 H 1.09002 * 109.87783 * 181.86046 * 15 14 12 41 41 H 1.08993 * 109.71628 * 61.16633 * 15 14 12 42 42 H 0.97004 * 119.99834 * 180.02562 * 20 19 17 43 43 H 1.08997 * 108.78788 * 199.09371 * 25 16 15 44 44 H 1.09001 * 108.70100 * 80.81578 * 25 16 15 45 45 H 1.08007 * 119.30959 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6595 -0.0056 6 6 4.6328 -1.5892 -0.0130 7 6 4.3004 -2.9441 -0.0179 8 6 5.3592 -3.9736 -0.0264 9 8 6.5244 -3.6483 0.0943 10 7 5.0338 -5.2738 -0.1678 11 6 3.8082 -6.0465 -0.4328 12 6 4.7011 -7.1126 -1.0965 13 1 4.4047 -8.1446 -0.9088 14 6 4.9601 -6.7857 -2.5693 15 6 6.3870 -7.1619 -2.9340 16 7 7.2931 -6.4172 -2.0555 17 6 8.2588 -5.6133 -2.5998 18 1 8.1200 -5.1942 -3.5854 19 6 9.4160 -5.3371 -1.8848 20 7 9.7350 -6.0711 -0.8399 21 14 10.5208 -3.9237 -2.4057 22 1 10.0937 -2.6808 -1.7141 23 1 11.9267 -4.2343 -2.0421 24 1 10.4201 -3.7323 -3.8748 25 6 7.1750 -6.5258 -0.6073 26 6 5.7403 -6.5564 -0.1340 27 1 5.6677 -7.0254 0.8472 28 6 2.9488 -3.3162 -0.0157 29 7 1.9930 -2.4177 -0.0007 30 6 2.2553 -1.1146 -0.0005 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 0.0003 35 1 5.6643 -1.2692 -0.0145 36 1 3.3108 -6.3971 0.4715 37 1 3.1263 -5.5561 -1.1276 38 1 4.2695 -7.3514 -3.1946 39 1 4.8135 -5.7186 -2.7366 40 1 6.5851 -6.9001 -3.9734 41 1 6.5332 -8.2324 -2.7904 42 1 10.5435 -5.8778 -0.3400 43 1 7.6776 -5.6740 -0.1493 44 1 7.6709 -7.4409 -0.2839 45 1 2.6890 -4.3645 -0.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084740199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 132.484788 kcal Electronic energy + Delta-G solvation = -30205.866182 eV Core-core repulsion = 26226.991560 eV Total energy + Delta-G solvation = -3978.874622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76856 -41.94031 -39.71381 -38.55065 -37.05731 -34.94063 -34.02401 -32.85308 -32.03402 -31.81251 -30.12557 -28.67397 -27.80449 -25.81005 -25.41228 -24.75768 -23.92146 -22.63123 -22.03468 -21.40701 -19.62032 -19.08734 -18.81648 -17.93989 -17.53523 -17.32255 -16.95347 -16.75677 -16.34454 -16.03755 -15.60699 -15.25032 -15.12612 -15.03012 -14.82375 -14.48953 -14.38232 -14.18096 -14.10073 -13.89712 -13.51212 -13.44698 -13.33673 -13.12858 -12.74779 -12.66766 -12.36616 -12.25130 -12.17262 -11.94540 -11.71650 -11.63783 -11.45238 -11.09168 -10.91079 -10.59167 -10.31511 -10.23767 -9.62572 -9.34612 -8.62263 -7.81602 -5.24543 -0.43261 -0.32491 1.03138 1.28545 1.37294 1.45429 1.47993 1.87967 1.90119 2.51758 2.71366 2.95403 3.13107 3.32546 3.42294 3.45320 3.50663 3.70823 3.77801 3.86724 3.99594 4.15267 4.26680 4.36756 4.38704 4.41699 4.50998 4.53993 4.61314 4.65134 4.73643 4.75845 4.81955 4.94651 4.99612 5.06458 5.11697 5.16664 5.27873 5.37269 5.47838 5.60582 5.63643 5.76007 5.86992 6.22380 6.44043 6.63124 6.94578 7.23893 7.29662 8.01402 8.39107 9.22507 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003706 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.330170 B = 7554.428942 C = 8996.042602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.397 5.397 3 N -0.256 5.256 4 C 0.105 3.895 5 C -0.250 4.250 6 C 0.064 3.936 7 C -0.233 4.233 8 C 0.584 3.416 9 O -0.577 6.577 10 N -0.635 5.635 11 C 0.094 3.906 12 C -0.098 4.098 13 H 0.138 0.862 14 C -0.105 4.105 15 C 0.139 3.861 16 N -0.602 5.602 17 C -0.254 4.254 18 H 0.056 0.944 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.951 3.049 22 H -0.299 1.299 23 H -0.290 1.290 24 H -0.266 1.266 25 C 0.180 3.820 26 C 0.108 3.892 27 H 0.098 0.902 28 C 0.205 3.795 29 N -0.507 5.507 30 C 0.312 3.688 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.244 0.756 43 H 0.049 0.951 44 H -0.004 1.004 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.498 5.304 2.698 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.187 5.187 3 N -0.067 5.067 4 C -0.093 4.093 5 C -0.260 4.260 6 C 0.035 3.965 7 C -0.240 4.240 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.369 5.369 11 C -0.027 4.027 12 C -0.116 4.116 13 H 0.155 0.845 14 C -0.144 4.144 15 C 0.014 3.986 16 N -0.325 5.325 17 C -0.384 4.384 18 H 0.074 0.926 19 C -0.238 4.238 20 N -0.578 5.578 21 Si 0.781 3.219 22 H -0.227 1.227 23 H -0.217 1.217 24 H -0.191 1.191 25 C 0.053 3.947 26 C 0.003 3.997 27 H 0.116 0.884 28 C 0.035 3.965 29 N -0.222 5.222 30 C 0.072 3.928 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.255 0.745 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.013 0.987 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -24.676 6.540 2.878 25.690 hybrid contribution 2.964 0.478 -0.004 3.002 sum -21.712 7.018 2.874 22.998 Atomic orbital electron populations 1.22136 0.71223 1.05743 1.04501 1.48467 1.07564 0.99415 1.63259 1.76718 1.03087 1.07604 1.19317 1.25723 0.95546 0.91994 0.96037 1.20625 0.93679 0.95855 1.15858 1.21248 0.99565 0.90481 0.85235 1.20623 0.95295 0.93829 1.14281 1.17677 0.87398 0.81135 0.76353 1.90857 1.21743 1.80973 1.52114 1.49410 1.14235 1.03239 1.70032 1.23829 0.88140 0.89256 1.01469 1.22741 0.94236 1.00616 0.94051 0.84479 1.21516 0.97190 1.00547 0.95136 1.20770 0.90212 0.94124 0.93500 1.43708 1.35913 1.51649 1.01247 1.19330 0.95876 1.21677 1.01540 0.92644 1.25553 0.98223 1.00886 0.99091 1.70169 1.25525 1.39690 1.22386 0.85502 0.78105 0.80194 0.78127 1.22661 1.21679 1.19089 1.19820 0.91921 0.98782 0.84157 1.22676 0.95327 0.81727 0.99940 0.88402 1.23711 0.85708 0.99897 0.87189 1.66824 1.37014 0.98372 1.19995 1.19442 0.89243 0.88785 0.95343 0.89884 0.88292 0.87686 0.74499 0.83673 0.85297 0.88186 0.88195 0.94145 0.93406 0.95471 0.94730 0.93208 0.98664 0.78039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 11.43 127.77 1.46 2.83 16 2 N -0.40 -8.75 4.03 -366.42 -1.48 -10.23 16 3 N -0.26 -5.67 12.39 -53.08 -0.66 -6.33 16 4 C 0.11 2.16 12.30 86.94 1.07 3.23 16 5 C -0.25 -6.53 6.36 -20.24 -0.13 -6.66 16 6 C 0.06 1.91 9.76 22.92 0.22 2.13 16 7 C -0.23 -7.26 5.89 -20.00 -0.12 -7.37 16 8 C 0.58 23.03 7.96 86.74 0.69 23.72 16 9 O -0.58 -29.92 15.60 -3.94 -0.06 -29.98 16 10 N -0.64 -20.96 3.31 -870.23 -2.88 -23.85 16 11 C 0.09 1.79 5.53 81.10 0.45 2.24 16 12 C -0.10 -2.35 4.58 -10.68 -0.05 -2.40 16 13 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.11 -3.02 5.61 30.29 0.17 -2.85 16 15 C 0.14 5.52 6.44 86.04 0.55 6.07 16 16 N -0.60 -31.14 3.02 -709.44 -2.14 -33.28 16 17 C -0.25 -15.01 9.51 84.03 0.80 -14.21 16 18 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 19 C -0.04 -2.57 4.91 84.86 0.42 -2.16 16 20 N -0.93 -59.38 11.05 21.65 0.24 -59.14 16 21 Si 0.95 49.93 29.58 68.60 2.03 51.96 16 22 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 23 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 24 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 25 C 0.18 9.05 4.56 85.91 0.39 9.44 16 26 C 0.11 3.77 4.04 38.61 0.16 3.92 16 27 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 28 C 0.20 4.98 10.31 85.26 0.88 5.86 16 29 N -0.51 -12.60 10.37 -191.95 -1.99 -14.59 16 30 C 0.31 8.04 7.96 134.18 1.07 9.11 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.24 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.15 4.52 7.74 -2.91 -0.02 4.50 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.54 6.63 -2.38 -0.02 1.53 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.34 7.68 -2.38 -0.02 1.32 16 40 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.05 3.04 5.01 -2.39 -0.01 3.03 16 44 H 0.00 -0.24 7.99 -2.39 -0.02 -0.26 16 45 H 0.20 3.56 4.19 -2.91 -0.01 3.55 16 Total: -1.00 -87.95 364.26 2.12 -85.83 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.03 Total: 6.69 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 8.03 Total: 32.91 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -8.91 Total: -147.42 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.06 Total: -29.98 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -87.95 2.12 -85.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084740199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.319 kcal (2) G-P(sol) polarization free energy of solvation -87.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds