Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35542 * 125.67669 * 2 1 4 4 C 1.35448 * 108.87035 * 179.97438 * 3 2 1 5 5 C 1.39843 * 107.86914 * 359.97438 * 4 3 2 6 6 C 1.37651 * 125.67913 * 179.97438 * 2 1 3 7 7 C 1.46679 * 126.23581 * 0.04982 * 6 2 1 8 8 O 1.21693 * 119.99574 * 5.65091 * 7 6 2 9 9 N 1.34773 * 120.00261 * 185.64538 * 7 6 2 10 10 C 1.46499 * 119.99857 * 185.15769 * 9 7 6 11 11 H 1.08994 * 110.41609 * 325.70477 * 10 9 7 12 12 C 1.54740 * 110.46568 * 203.21333 * 10 9 7 13 13 C 1.53503 * 101.49296 * 216.97869 * 12 10 9 14 14 C 1.53046 * 115.28369 * 254.71763 * 13 12 10 15 15 N 1.47757 * 85.82490 * 220.07938 * 14 13 12 16 16 C 1.36931 * 134.41432 * 203.97113 * 15 14 13 17 17 H 1.07997 * 120.00304 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99997 * 359.97438 * 16 15 14 19 19 N 1.31629 * 119.99761 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47170 * 89.99893 * 20 18 16 22 22 H 1.48500 * 109.46878 * 210.00095 * 20 18 16 23 23 H 1.48497 * 109.46884 * 329.99658 * 20 18 16 24 24 C 1.47759 * 91.17609 * 23.97234 * 15 14 13 25 25 N 1.46156 * 106.64719 * 24.93629 * 13 12 10 26 26 C 1.37261 * 142.22136 * 163.51840 * 25 13 12 27 27 C 1.34527 * 106.91668 * 180.02562 * 26 25 13 28 28 N 1.33977 * 108.04227 * 0.02562 * 27 26 25 29 29 C 1.30698 * 109.43576 * 359.86809 * 28 27 26 30 30 H 1.08999 * 109.47184 * 86.02710 * 1 2 3 31 31 H 1.08998 * 109.46893 * 206.02339 * 1 2 3 32 32 H 1.09004 * 109.46942 * 326.02350 * 1 2 3 33 33 H 1.07992 * 125.56186 * 359.95849 * 3 2 1 34 34 H 1.08001 * 126.07056 * 179.73915 * 4 3 2 35 35 H 1.07993 * 126.45957 * 180.02562 * 5 4 3 36 36 H 0.96998 * 119.99995 * 5.15993 * 9 7 6 37 37 H 1.09003 * 111.01727 * 335.03311 * 12 10 9 38 38 H 1.08997 * 111.01868 * 98.92159 * 12 10 9 39 39 H 1.09000 * 113.81498 * 334.30435 * 14 13 12 40 40 H 1.09000 * 113.81627 * 105.85131 * 14 13 12 41 41 H 0.97002 * 119.99951 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.81148 * 221.80306 * 24 15 14 43 43 H 1.08996 * 113.81823 * 90.25087 * 24 15 14 44 44 H 1.08006 * 126.54112 * 0.06332 * 26 25 13 45 45 H 1.08004 * 125.97589 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0005 7 6 1.8125 -2.5125 0.0001 8 8 0.6267 -2.7652 -0.1045 9 7 2.7073 -3.5136 0.1155 10 6 2.2670 -4.9063 0.0018 11 1 1.2669 -5.0241 0.4189 12 6 3.2653 -5.8493 0.7150 13 6 3.2565 -7.0671 -0.2194 14 6 2.4899 -8.2851 0.3013 15 7 3.5951 -9.0869 -0.2634 16 6 3.7171 -10.3806 -0.6952 17 1 4.6628 -10.7355 -1.0773 18 6 2.6251 -11.2360 -0.6417 19 7 1.4726 -10.8036 -0.1755 20 14 2.7916 -13.0012 -1.2300 21 1 3.2083 -13.8639 -0.0954 22 1 1.4856 -13.4726 -1.7567 23 1 3.8131 -13.0701 -2.3056 24 6 4.5162 -7.9348 -0.1760 25 7 2.8605 -6.5794 -1.5391 26 6 2.8561 -6.9258 -2.8673 27 6 2.2915 -5.9043 -3.5363 28 7 1.9596 -4.9588 -2.6470 29 6 2.2938 -5.3540 -1.4469 30 1 -0.3633 0.0712 -1.0252 31 1 -0.3633 -0.9235 0.4509 32 1 -0.3633 0.8522 0.5743 33 1 1.9081 2.1236 -0.0006 34 1 4.4132 1.3612 -0.0033 35 1 4.4584 -1.3143 0.0026 36 1 3.6428 -3.3121 0.2738 37 1 4.2580 -5.4019 0.7651 38 1 2.9081 -6.1168 1.7094 39 1 2.4233 -8.3314 1.3882 40 1 1.5319 -8.4464 -0.1929 41 1 0.7094 -11.4013 -0.1384 42 1 5.1603 -7.8193 -1.0477 43 1 5.0590 -7.8758 0.7673 44 1 3.2333 -7.8436 -3.2938 45 1 2.1334 -5.8551 -4.6036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092347675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 161.985487 kcal Electronic energy + Delta-G solvation = -29626.476459 eV Core-core repulsion = 25648.881084 eV Total energy + Delta-G solvation = -3977.595376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18400 -41.44728 -39.03383 -38.40786 -35.60067 -33.56393 -32.82274 -31.77895 -30.79219 -29.20945 -28.26775 -27.16836 -26.63360 -25.32928 -24.61432 -22.66482 -21.88101 -21.27070 -20.74485 -19.79478 -19.70926 -18.69898 -18.02541 -16.96867 -16.40977 -15.83800 -15.70382 -15.58975 -14.87409 -14.77795 -14.38861 -14.27059 -13.94687 -13.76979 -13.62530 -13.54769 -13.44651 -13.32842 -12.93127 -12.57216 -12.50527 -12.42732 -12.16696 -12.09448 -11.96916 -11.60799 -11.36511 -10.95618 -10.73620 -10.35789 -10.09355 -9.94843 -9.75749 -9.48861 -9.25259 -8.99821 -8.90563 -8.90080 -8.36871 -7.89059 -7.12015 -5.92904 -3.27774 1.38709 2.37975 2.59303 2.61690 3.10293 3.30335 3.33088 3.36029 3.37420 3.38118 3.68517 4.08784 4.30084 4.48472 4.65659 4.68655 4.78172 4.81494 4.84140 5.04031 5.08519 5.22523 5.26300 5.38576 5.43002 5.48196 5.49740 5.71538 5.76973 5.86899 5.88599 5.99478 6.02078 6.14906 6.17039 6.22583 6.35424 6.59512 6.76893 6.82580 6.94004 6.96568 7.03934 7.29800 7.33168 7.43021 7.63288 7.78918 8.18074 8.61870 8.86171 9.53384 10.34180 11.23789 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002586 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.839210 B =10826.125301 C =10936.911650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.410 5.410 3 C 0.010 3.990 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.045 4.045 7 C 0.596 3.404 8 O -0.537 6.537 9 N -0.705 5.705 10 C 0.237 3.763 11 H 0.119 0.881 12 C -0.119 4.119 13 C 0.103 3.897 14 C 0.167 3.833 15 N -0.605 5.605 16 C -0.231 4.231 17 H 0.082 0.918 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.122 3.878 25 N -0.431 5.431 26 C 0.004 3.996 27 C -0.047 4.047 28 N -0.469 5.469 29 C 0.156 3.844 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.257 0.743 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.169 0.831 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 21.423 3.191 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.082 5.082 3 C -0.125 4.125 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.159 4.159 7 C 0.384 3.616 8 O -0.415 6.415 9 N -0.357 5.357 10 C 0.130 3.870 11 H 0.137 0.863 12 C -0.159 4.159 13 C 0.017 3.983 14 C 0.041 3.959 15 N -0.332 5.332 16 C -0.359 4.359 17 H 0.100 0.900 18 C -0.199 4.199 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.004 4.004 25 N -0.113 5.113 26 C -0.130 4.130 27 C -0.195 4.195 28 N -0.188 5.188 29 C -0.107 4.107 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.239 0.761 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.187 0.813 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.176 21.382 2.871 21.683 hybrid contribution 0.893 -1.791 -0.270 2.020 sum 3.069 19.591 2.601 20.000 Atomic orbital electron populations 1.22303 0.76056 1.05404 1.03914 1.43861 1.06879 1.04963 1.52546 1.21998 0.90754 0.91482 1.08315 1.20803 0.95965 0.95014 1.11441 1.21340 0.94419 0.95501 1.05633 1.20052 0.90459 0.87556 1.17813 1.16914 0.85586 0.83387 0.75722 1.90800 1.16232 1.84676 1.49768 1.45505 1.11456 1.04826 1.73879 1.19900 1.00678 0.79800 0.86604 0.86344 1.22866 0.99779 0.93568 0.99656 1.22929 1.01369 0.94411 0.79633 1.22561 0.94930 0.81813 0.96568 1.45975 1.06536 1.08168 1.72487 1.18957 0.96807 0.84666 1.35425 0.90035 1.24807 0.95643 0.98507 1.00962 1.69787 1.00911 1.35245 1.50408 0.86095 0.77047 0.84120 0.78320 1.21435 1.21488 1.20524 1.22745 0.92033 0.86098 0.99558 1.45802 1.43575 1.16232 1.05661 1.22414 1.07480 1.02042 0.81098 1.22161 1.06556 0.91654 0.99127 1.69652 1.21691 1.29924 0.97543 1.24403 1.03077 0.87175 0.96052 0.90468 0.87639 0.90147 0.81562 0.84096 0.83943 0.76124 0.88976 0.87183 0.93322 0.89963 0.93333 0.93010 0.92726 0.81325 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.64 59.85 0.64 1.22 16 2 N -0.41 -4.51 3.16 -120.24 -0.38 -4.89 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -1.91 10.81 -39.98 -0.43 -2.35 16 5 C -0.14 -1.48 10.35 -39.11 -0.40 -1.89 16 6 C -0.04 -0.56 6.88 -81.98 -0.56 -1.13 16 7 C 0.60 8.62 7.76 -12.85 -0.10 8.52 16 8 O -0.54 -9.44 14.31 5.20 0.07 -9.36 16 9 N -0.71 -8.83 5.12 -54.89 -0.28 -9.11 16 10 C 0.24 3.48 3.30 -67.70 -0.22 3.25 16 11 H 0.12 1.87 7.54 -51.93 -0.39 1.48 16 12 C -0.12 -1.49 6.21 -25.55 -0.16 -1.64 16 13 C 0.10 1.79 1.55 -136.71 -0.21 1.57 16 14 C 0.17 3.63 6.97 -3.33 -0.02 3.61 16 15 N -0.61 -14.33 3.70 -182.60 -0.68 -15.01 16 16 C -0.23 -6.15 10.70 -15.06 -0.16 -6.31 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 19 N -0.92 -26.31 11.40 55.49 0.63 -25.68 16 20 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C 0.12 2.24 8.45 -3.34 -0.03 2.21 16 25 N -0.43 -8.11 3.38 -103.47 -0.35 -8.46 16 26 C 0.00 0.07 12.03 -16.43 -0.20 -0.12 16 27 C -0.05 -0.86 11.86 -17.93 -0.21 -1.08 16 28 N -0.47 -9.43 11.24 -10.47 -0.12 -9.55 16 29 C 0.16 2.88 8.24 -154.52 -1.27 1.61 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.17 6.23 -51.93 -0.32 0.84 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.16 7.49 -52.49 -0.39 0.77 16 36 H 0.40 3.84 7.36 -40.82 -0.30 3.54 16 37 H 0.09 0.90 7.80 -51.93 -0.41 0.49 16 38 H 0.11 1.18 7.84 -51.93 -0.41 0.77 16 39 H 0.05 1.02 7.95 -51.93 -0.41 0.61 16 40 H 0.08 2.11 7.19 -51.93 -0.37 1.74 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 44 H 0.17 3.15 8.06 -52.48 -0.42 2.72 16 45 H 0.17 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -35.48 376.14 -10.03 -45.51 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.93 Total: 7.13 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -3.64 Total: 7.23 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.17 Total: -72.69 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.48 -10.03 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092347675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.496 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds