Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35542 * 125.67669 * 2 1 4 4 C 1.35448 * 108.87035 * 179.97438 * 3 2 1 5 5 C 1.39843 * 107.86914 * 359.97438 * 4 3 2 6 6 C 1.37651 * 125.67913 * 179.97438 * 2 1 3 7 7 C 1.46679 * 126.23581 * 0.04982 * 6 2 1 8 8 O 1.21693 * 119.99574 * 5.65091 * 7 6 2 9 9 N 1.34773 * 120.00261 * 185.64538 * 7 6 2 10 10 C 1.46499 * 119.99857 * 185.15769 * 9 7 6 11 11 H 1.08994 * 110.41609 * 325.70477 * 10 9 7 12 12 C 1.54740 * 110.46568 * 203.21333 * 10 9 7 13 13 C 1.53503 * 101.49296 * 216.97869 * 12 10 9 14 14 C 1.53046 * 115.28369 * 254.71763 * 13 12 10 15 15 N 1.47757 * 85.82490 * 220.07938 * 14 13 12 16 16 C 1.36931 * 134.41432 * 203.97113 * 15 14 13 17 17 H 1.07997 * 120.00304 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99997 * 359.97438 * 16 15 14 19 19 N 1.31629 * 119.99761 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47170 * 89.99893 * 20 18 16 22 22 H 1.48500 * 109.46878 * 210.00095 * 20 18 16 23 23 H 1.48497 * 109.46884 * 329.99658 * 20 18 16 24 24 C 1.47759 * 91.17609 * 23.97234 * 15 14 13 25 25 N 1.46156 * 106.64719 * 24.93629 * 13 12 10 26 26 C 1.37261 * 142.22136 * 163.51840 * 25 13 12 27 27 C 1.34527 * 106.91668 * 180.02562 * 26 25 13 28 28 N 1.33977 * 108.04227 * 0.02562 * 27 26 25 29 29 C 1.30698 * 109.43576 * 359.86809 * 28 27 26 30 30 H 1.08999 * 109.47184 * 86.02710 * 1 2 3 31 31 H 1.08998 * 109.46893 * 206.02339 * 1 2 3 32 32 H 1.09004 * 109.46942 * 326.02350 * 1 2 3 33 33 H 1.07992 * 125.56186 * 359.95849 * 3 2 1 34 34 H 1.08001 * 126.07056 * 179.73915 * 4 3 2 35 35 H 1.07993 * 126.45957 * 180.02562 * 5 4 3 36 36 H 0.96998 * 119.99995 * 5.15993 * 9 7 6 37 37 H 1.09003 * 111.01727 * 335.03311 * 12 10 9 38 38 H 1.08997 * 111.01868 * 98.92159 * 12 10 9 39 39 H 1.09000 * 113.81498 * 334.30435 * 14 13 12 40 40 H 1.09000 * 113.81627 * 105.85131 * 14 13 12 41 41 H 0.97002 * 119.99951 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.81148 * 221.80306 * 24 15 14 43 43 H 1.08996 * 113.81823 * 90.25087 * 24 15 14 44 44 H 1.08006 * 126.54112 * 0.06332 * 26 25 13 45 45 H 1.08004 * 125.97589 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0005 7 6 1.8125 -2.5125 0.0001 8 8 0.6267 -2.7652 -0.1045 9 7 2.7073 -3.5136 0.1155 10 6 2.2670 -4.9063 0.0018 11 1 1.2669 -5.0241 0.4189 12 6 3.2653 -5.8493 0.7150 13 6 3.2565 -7.0671 -0.2194 14 6 2.4899 -8.2851 0.3013 15 7 3.5951 -9.0869 -0.2634 16 6 3.7171 -10.3806 -0.6952 17 1 4.6628 -10.7355 -1.0773 18 6 2.6251 -11.2360 -0.6417 19 7 1.4726 -10.8036 -0.1755 20 14 2.7916 -13.0012 -1.2300 21 1 3.2083 -13.8639 -0.0954 22 1 1.4856 -13.4726 -1.7567 23 1 3.8131 -13.0701 -2.3056 24 6 4.5162 -7.9348 -0.1760 25 7 2.8605 -6.5794 -1.5391 26 6 2.8561 -6.9258 -2.8673 27 6 2.2915 -5.9043 -3.5363 28 7 1.9596 -4.9588 -2.6470 29 6 2.2938 -5.3540 -1.4469 30 1 -0.3633 0.0712 -1.0252 31 1 -0.3633 -0.9235 0.4509 32 1 -0.3633 0.8522 0.5743 33 1 1.9081 2.1236 -0.0006 34 1 4.4132 1.3612 -0.0033 35 1 4.4584 -1.3143 0.0026 36 1 3.6428 -3.3121 0.2738 37 1 4.2580 -5.4019 0.7651 38 1 2.9081 -6.1168 1.7094 39 1 2.4233 -8.3314 1.3882 40 1 1.5319 -8.4464 -0.1929 41 1 0.7094 -11.4013 -0.1384 42 1 5.1603 -7.8193 -1.0477 43 1 5.0590 -7.8758 0.7673 44 1 3.2333 -7.8436 -3.2938 45 1 2.1334 -5.8551 -4.6036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092347675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = 138.616501 kcal Electronic energy + Delta-G solvation = -29627.489815 eV Core-core repulsion = 25648.881084 eV Total energy + Delta-G solvation = -3978.608731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.59992 -42.23235 -40.16961 -39.88488 -36.87256 -34.98174 -33.84698 -33.38935 -32.05685 -30.19861 -29.79720 -28.70662 -27.33802 -26.93502 -26.05950 -23.79688 -23.23000 -22.86289 -21.55620 -21.08275 -20.66065 -20.16090 -18.93423 -18.77020 -17.62349 -17.23659 -16.81429 -16.60432 -16.39481 -16.06080 -15.65449 -15.63667 -15.38791 -15.13132 -14.93631 -14.81955 -14.43382 -14.35649 -14.08256 -13.98845 -13.52305 -13.31344 -13.25938 -13.19223 -13.13286 -13.00537 -12.84128 -12.81062 -12.43642 -11.92299 -11.81026 -11.57308 -11.09009 -11.05144 -10.87884 -10.43950 -10.38080 -9.63252 -9.35154 -9.13199 -9.02900 -7.97403 -5.31051 0.52040 1.04063 1.42353 1.43216 1.51719 1.59469 1.85546 1.89950 2.13370 2.38550 2.39149 2.45818 2.83454 3.12341 3.29740 3.36361 3.51123 3.68382 3.87492 4.02792 4.08546 4.21114 4.24566 4.26771 4.40053 4.53642 4.58114 4.59993 4.65535 4.68748 4.70954 4.74202 4.78371 4.88083 5.09083 5.19110 5.22713 5.29444 5.32669 5.38640 5.49183 5.82270 5.86381 5.89646 6.06539 6.18267 6.37258 6.50751 6.82915 7.14889 7.19477 7.53560 8.42433 9.18813 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002586 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.839210 B =10826.125301 C =10936.911650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.422 5.422 3 C 0.021 3.979 4 C -0.220 4.220 5 C -0.134 4.134 6 C -0.088 4.088 7 C 0.591 3.409 8 O -0.580 6.580 9 N -0.690 5.690 10 C 0.241 3.759 11 H 0.103 0.897 12 C -0.100 4.100 13 C 0.117 3.883 14 C 0.164 3.836 15 N -0.636 5.636 16 C -0.231 4.231 17 H 0.085 0.915 18 C -0.063 4.063 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.268 1.268 24 C 0.129 3.871 25 N -0.440 5.440 26 C -0.020 4.020 27 C -0.045 4.045 28 N -0.503 5.503 29 C 0.156 3.844 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.202 0.798 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.420 0.580 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.247 0.753 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.165 0.835 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 23.889 4.116 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.095 5.095 3 C -0.115 4.115 4 C -0.243 4.243 5 C -0.161 4.161 6 C -0.201 4.201 7 C 0.381 3.619 8 O -0.462 6.462 9 N -0.342 5.342 10 C 0.132 3.868 11 H 0.121 0.879 12 C -0.139 4.139 13 C 0.031 3.969 14 C 0.038 3.962 15 N -0.363 5.363 16 C -0.359 4.359 17 H 0.103 0.897 18 C -0.256 4.256 19 N -0.600 5.600 20 Si 0.803 3.197 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.193 1.193 24 C 0.004 3.996 25 N -0.122 5.122 26 C -0.154 4.154 27 C -0.193 4.193 28 N -0.223 5.223 29 C -0.108 4.108 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.219 0.781 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.259 0.741 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.183 0.817 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.770 23.870 3.799 24.637 hybrid contribution 0.136 -2.423 -0.596 2.499 sum 4.906 21.447 3.203 22.233 Atomic orbital electron populations 1.22327 0.75665 1.05590 1.04102 1.44106 1.07442 1.05207 1.52721 1.22702 0.90657 0.92380 1.05722 1.21201 0.97017 0.94769 1.11342 1.21718 0.94111 0.96583 1.03689 1.19984 0.91714 0.86979 1.21414 1.17322 0.85155 0.84575 0.74823 1.90777 1.18045 1.85405 1.51934 1.45292 1.12150 1.03573 1.73229 1.19873 1.00924 0.81437 0.84525 0.87927 1.22968 1.01540 0.90322 0.99050 1.22761 0.99160 0.95243 0.79746 1.22464 0.92922 0.84269 0.96542 1.46268 1.08946 1.08291 1.72789 1.19307 0.96599 0.86044 1.33924 0.89678 1.25566 0.95612 1.02150 1.02279 1.69982 1.01400 1.35966 1.52648 0.85134 0.76496 0.80002 0.78043 1.21077 1.22638 1.19320 1.22958 0.91923 0.83471 1.01210 1.45993 1.43867 1.16450 1.05908 1.22522 1.08693 1.02313 0.81836 1.22588 1.05461 0.91022 1.00205 1.69671 1.22937 1.31027 0.98664 1.25149 1.01572 0.87003 0.97078 0.90763 0.90197 0.86702 0.78080 0.81646 0.82000 0.74141 0.84783 0.84596 0.92433 0.94894 0.94362 0.92815 0.88940 0.81735 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.64 127.77 1.36 2.49 16 2 N -0.42 -8.63 3.16 -534.32 -1.69 -10.32 16 3 C 0.02 0.31 11.38 83.47 0.95 1.26 16 4 C -0.22 -3.29 10.81 22.01 0.24 -3.05 16 5 C -0.13 -2.44 10.35 22.57 0.23 -2.21 16 6 C -0.09 -2.11 6.88 40.35 0.28 -1.83 16 7 C 0.59 16.95 7.76 86.45 0.67 17.63 16 8 O -0.58 -21.12 14.31 -4.33 -0.06 -21.18 16 9 N -0.69 -16.23 5.12 -445.79 -2.28 -18.52 16 10 C 0.24 6.80 3.30 45.14 0.15 6.95 16 11 H 0.10 3.28 7.54 -2.39 -0.02 3.26 16 12 C -0.10 -2.18 6.21 31.36 0.19 -1.99 16 13 C 0.12 3.90 1.55 5.61 0.01 3.91 16 14 C 0.16 7.19 6.97 86.15 0.60 7.80 16 15 N -0.64 -29.98 3.70 -731.62 -2.71 -32.69 16 16 C -0.23 -12.30 10.70 84.04 0.90 -11.40 16 17 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 19 N -0.95 -56.57 11.40 21.65 0.25 -56.33 16 20 Si 0.97 45.11 29.55 68.60 2.03 47.13 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.13 4.43 8.45 86.14 0.73 5.16 16 25 N -0.44 -16.50 3.38 -481.28 -1.63 -18.13 16 26 C -0.02 -0.77 12.03 82.99 1.00 0.23 16 27 C -0.05 -1.69 11.86 83.52 0.99 -0.70 16 28 N -0.50 -20.42 11.24 -187.05 -2.10 -22.53 16 29 C 0.16 5.73 8.24 138.29 1.14 6.87 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.85 6.23 -2.39 -0.01 1.83 16 32 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.16 2.10 7.49 -2.91 -0.02 2.08 16 36 H 0.42 6.76 7.36 -92.71 -0.68 6.08 16 37 H 0.13 1.89 7.80 -2.39 -0.02 1.87 16 38 H 0.14 2.38 7.84 -2.39 -0.02 2.36 16 39 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 40 H 0.03 1.77 7.19 -2.39 -0.02 1.75 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 2.58 8.13 -2.39 -0.02 2.56 16 44 H 0.17 6.36 8.06 -2.91 -0.02 6.34 16 45 H 0.19 5.84 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -81.75 376.14 2.05 -79.69 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.35 Total: 24.78 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 9.90 Total: 28.09 kcal Atomic # 7 Polarization: -148.34 SS G_CDS: -10.16 Total: -158.51 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -81.75 2.05 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092347675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.310 kcal (2) G-P(sol) polarization free energy of solvation -81.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds