Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35533 * 125.67965 * 2 1 4 4 C 1.35447 * 108.87303 * 180.02562 * 3 2 1 5 5 C 1.39843 * 107.86359 * 359.73566 * 4 3 2 6 6 C 1.37656 * 125.67431 * 180.02562 * 2 1 3 7 7 C 1.46677 * 126.23614 * 359.97438 * 6 2 1 8 8 O 1.21690 * 120.00028 * 5.18776 * 7 6 2 9 9 N 1.34780 * 119.99706 * 185.18598 * 7 6 2 10 10 C 1.46501 * 119.99355 * 175.03370 * 9 7 6 11 11 H 1.08992 * 110.51975 * 36.09556 * 10 9 7 12 12 C 1.54766 * 110.47244 * 158.64694 * 10 9 7 13 13 C 1.53377 * 101.47081 * 94.55057 * 12 10 9 14 14 C 1.52444 * 115.88931 * 252.95111 * 13 12 10 15 15 N 1.47264 * 87.72484 * 218.51929 * 14 13 12 16 16 C 1.36941 * 135.94294 * 206.23020 * 15 14 13 17 17 H 1.07997 * 119.99975 * 6.12103 * 16 15 14 18 18 C 1.38815 * 119.99413 * 186.12927 * 16 15 14 19 19 N 1.31619 * 119.99632 * 194.97638 * 18 16 15 20 20 Si 1.86798 * 120.00450 * 14.98101 * 18 16 15 21 21 H 1.48503 * 109.47008 * 269.99848 * 20 18 16 22 22 H 1.48496 * 109.46843 * 30.00062 * 20 18 16 23 23 H 1.48496 * 109.46991 * 149.99867 * 20 18 16 24 24 C 1.47254 * 88.11085 * 26.48110 * 15 14 13 25 25 N 1.46038 * 106.82762 * 24.68143 * 13 12 10 26 26 C 1.37277 * 142.29666 * 163.78047 * 25 13 12 27 27 C 1.34515 * 106.92649 * 180.19366 * 26 25 13 28 28 N 1.33974 * 108.04886 * 359.95993 * 27 26 25 29 29 C 1.30858 * 109.35729 * 359.93794 * 28 27 26 30 30 H 1.08998 * 109.46907 * 271.17637 * 1 2 3 31 31 H 1.08998 * 109.46915 * 31.18002 * 1 2 3 32 32 H 1.08995 * 109.46839 * 151.17716 * 1 2 3 33 33 H 1.07998 * 125.56185 * 0.04660 * 3 2 1 34 34 H 1.08003 * 126.07151 * 180.02562 * 4 3 2 35 35 H 1.08002 * 126.45624 * 180.30290 * 5 4 3 36 36 H 0.96998 * 120.00146 * 355.03077 * 9 7 6 37 37 H 1.08999 * 111.02235 * 336.50072 * 12 10 9 38 38 H 1.09004 * 111.03318 * 212.59547 * 12 10 9 39 39 H 1.09000 * 113.51413 * 103.80534 * 14 13 12 40 40 H 1.08998 * 113.51255 * 333.23094 * 14 13 12 41 41 H 0.97008 * 119.99967 * 354.96005 * 19 18 16 42 42 H 1.08997 * 113.51484 * 88.23532 * 24 15 14 43 43 H 1.09002 * 113.51080 * 218.80758 * 24 15 14 44 44 H 1.08005 * 126.53901 * 0.21678 * 26 25 13 45 45 H 1.08000 * 125.98006 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5779 -0.6889 0.0052 6 6 2.2678 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0006 8 8 0.6257 -2.7650 -0.0955 9 7 2.7082 -3.5140 0.1044 10 6 2.2473 -4.9003 0.2139 11 1 1.3570 -5.0562 -0.3952 12 6 3.3697 -5.8788 -0.2083 13 6 4.0070 -6.2145 1.1458 14 6 5.3739 -5.5935 1.4103 15 7 5.7572 -6.8579 2.0607 16 6 6.6502 -7.2360 3.0276 17 1 7.2115 -6.4873 3.5668 18 6 6.8341 -8.5817 3.3143 19 7 7.4528 -8.9405 4.4193 20 14 6.2036 -9.8834 2.1322 21 1 4.8119 -10.2511 2.4972 22 1 6.2271 -9.3475 0.7475 23 1 7.0706 -11.0863 2.2122 24 6 4.7649 -7.5388 1.2121 25 7 2.9819 -5.9929 2.1621 26 6 2.6705 -6.2721 3.4696 27 6 1.4803 -5.6975 3.7200 28 7 1.0725 -5.0831 2.6015 29 6 1.9676 -5.2532 1.6622 30 1 -0.3633 0.0211 1.0274 31 1 -0.3633 0.8792 -0.5320 32 1 -0.3633 -0.9003 -0.4954 33 1 1.9082 2.1235 0.0007 34 1 4.4133 1.3611 -0.0003 35 1 4.4583 -1.3145 0.0109 36 1 3.6579 -3.3169 0.1074 37 1 4.0869 -5.3901 -0.8677 38 1 2.9548 -6.7711 -0.6772 39 1 5.3412 -4.7453 2.0941 40 1 5.9389 -5.3828 0.5024 41 1 7.8444 -8.2665 4.9966 42 1 5.1631 -7.8604 0.2498 43 1 4.2193 -8.3283 1.7289 44 1 3.2675 -6.8438 4.1648 45 1 0.9468 -5.7262 4.6586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092347676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 169.488865 kcal Electronic energy + Delta-G solvation = -30064.301877 eV Core-core repulsion = 26087.031873 eV Total energy + Delta-G solvation = -3977.270005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43428 -41.49355 -39.19514 -38.83582 -35.81696 -33.64050 -32.87090 -32.10933 -30.98623 -29.31053 -28.53431 -27.39160 -26.66978 -25.85019 -24.55389 -22.79105 -21.84322 -21.05950 -20.77491 -20.09022 -19.78890 -18.97529 -18.09939 -17.64084 -16.70883 -16.21204 -15.83465 -15.63283 -14.99602 -14.86572 -14.65528 -14.37938 -14.14749 -13.94643 -13.81030 -13.57619 -13.44234 -13.42071 -13.26450 -12.94585 -12.58646 -12.51281 -12.39626 -12.20822 -12.20518 -12.14663 -11.31339 -11.00860 -10.75920 -10.45858 -10.09186 -9.86672 -9.62195 -9.44923 -9.41272 -9.05307 -8.93425 -8.91710 -8.41421 -8.07992 -7.43399 -6.47895 -3.42443 1.32136 2.16453 2.53440 2.56858 2.98375 3.13655 3.26798 3.29638 3.31804 3.46968 3.60549 3.89231 4.30242 4.35526 4.43146 4.54415 4.60182 4.63357 4.74867 4.78316 5.04906 5.19291 5.21254 5.23081 5.30374 5.33821 5.43892 5.50446 5.57530 5.60492 5.82732 5.85797 5.86494 5.96686 5.98953 6.01456 6.06265 6.22181 6.29269 6.55068 6.76667 6.78656 6.80672 7.00018 7.16445 7.31562 7.44114 8.06619 8.07602 8.45101 8.78526 9.30088 10.10599 11.02015 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.003185 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.346430 B = 8788.875517 C = 9329.253421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.410 5.410 3 C 0.012 3.988 4 C -0.208 4.208 5 C -0.141 4.141 6 C -0.050 4.050 7 C 0.596 3.404 8 O -0.535 6.535 9 N -0.707 5.707 10 C 0.235 3.765 11 H 0.118 0.882 12 C -0.118 4.118 13 C 0.107 3.893 14 C 0.119 3.881 15 N -0.615 5.615 16 C -0.311 4.311 17 H 0.084 0.916 18 C -0.018 4.018 19 N -0.925 5.925 20 Si 1.058 2.942 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.292 1.292 24 C 0.104 3.896 25 N -0.432 5.432 26 C 0.004 3.996 27 C -0.044 4.044 28 N -0.463 5.463 29 C 0.154 3.846 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.404 0.596 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.264 0.736 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.173 0.827 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 16.059 -12.778 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.082 5.082 3 C -0.124 4.124 4 C -0.232 4.232 5 C -0.167 4.167 6 C -0.163 4.163 7 C 0.384 3.616 8 O -0.412 6.412 9 N -0.359 5.359 10 C 0.129 3.871 11 H 0.136 0.864 12 C -0.158 4.158 13 C 0.020 3.980 14 C -0.008 4.008 15 N -0.343 5.343 16 C -0.437 4.437 17 H 0.102 0.898 18 C -0.218 4.218 19 N -0.566 5.566 20 Si 0.890 3.110 21 H -0.220 1.220 22 H -0.207 1.207 23 H -0.219 1.219 24 C -0.022 4.022 25 N -0.113 5.113 26 C -0.130 4.130 27 C -0.192 4.192 28 N -0.182 5.182 29 C -0.109 4.109 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.240 0.760 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.191 0.809 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.177 14.438 -12.866 22.853 hybrid contribution 1.634 1.324 0.729 2.226 sum -10.543 15.762 -12.136 22.514 Atomic orbital electron populations 1.22325 0.76047 1.05410 1.04033 1.43855 1.06874 1.04927 1.52592 1.22020 0.90753 0.91495 1.08110 1.20826 0.96021 0.95027 1.11282 1.21376 0.94431 0.95612 1.05315 1.20009 0.90480 0.87530 1.18319 1.16933 0.85547 0.83403 0.75730 1.90792 1.16050 1.84622 1.49780 1.45581 1.09932 1.05275 1.75135 1.19669 0.98620 0.80563 0.88295 0.86446 1.22786 0.97247 0.99980 0.95766 1.22304 0.88663 1.01959 0.85058 1.22637 0.88804 0.92552 0.96812 1.46269 1.44455 1.02979 1.40610 1.20106 1.19516 0.93945 1.10142 0.89823 1.25750 0.99894 0.96322 0.99860 1.70896 1.38700 1.36335 1.10651 0.83837 0.75712 0.76078 0.75409 1.22045 1.20744 1.21895 1.22927 0.89582 0.93453 0.96243 1.45684 1.17158 1.39206 1.09292 1.22572 0.99248 1.06330 0.84830 1.22226 0.95629 1.03469 0.97848 1.69789 1.27541 1.21949 0.98966 1.24430 0.88318 1.00685 0.97477 0.90581 0.90050 0.87477 0.81487 0.83989 0.83866 0.75980 0.87153 0.87369 0.92840 0.92481 0.92602 0.91464 0.92122 0.80945 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.67 59.85 0.64 1.20 16 2 N -0.41 -4.47 3.16 -120.24 -0.38 -4.85 16 3 C 0.01 0.11 11.38 -16.91 -0.19 -0.09 16 4 C -0.21 -1.97 10.81 -39.98 -0.43 -2.41 16 5 C -0.14 -1.50 10.35 -39.12 -0.41 -1.91 16 6 C -0.05 -0.62 6.89 -81.98 -0.56 -1.18 16 7 C 0.60 8.23 7.76 -12.85 -0.10 8.13 16 8 O -0.53 -8.77 14.30 5.20 0.07 -8.70 16 9 N -0.71 -8.50 5.11 -54.87 -0.28 -8.78 16 10 C 0.24 3.08 3.27 -67.68 -0.22 2.85 16 11 H 0.12 1.53 7.60 -51.93 -0.39 1.13 16 12 C -0.12 -1.30 6.15 -25.61 -0.16 -1.45 16 13 C 0.11 1.68 1.64 -133.40 -0.22 1.46 16 14 C 0.12 2.05 8.18 -7.92 -0.06 1.98 16 15 N -0.62 -13.73 3.65 -184.74 -0.67 -14.40 16 16 C -0.31 -8.40 11.03 -15.06 -0.17 -8.57 16 17 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 18 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 19 N -0.92 -28.06 13.70 55.49 0.76 -27.30 16 20 Si 1.06 25.07 25.48 -169.99 -4.33 20.74 16 21 H -0.29 -6.77 6.97 56.52 0.39 -6.37 16 22 H -0.28 -5.95 5.58 56.52 0.32 -5.64 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.10 1.96 5.15 -7.79 -0.04 1.92 16 25 N -0.43 -7.61 3.42 -100.94 -0.34 -7.95 16 26 C 0.00 0.08 12.03 -16.43 -0.20 -0.12 16 27 C -0.04 -0.77 11.86 -17.93 -0.21 -0.98 16 28 N -0.46 -8.86 11.25 -10.49 -0.12 -8.98 16 29 C 0.15 2.64 8.22 -154.56 -1.27 1.37 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 1.14 6.15 -51.93 -0.32 0.82 16 33 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.24 7.45 -52.49 -0.39 0.84 16 36 H 0.40 4.01 7.47 -40.82 -0.30 3.71 16 37 H 0.11 0.88 7.75 -51.93 -0.40 0.48 16 38 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.83 7.98 -51.93 -0.41 0.42 16 41 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 42 H 0.07 1.16 7.01 -51.93 -0.36 0.79 16 43 H 0.06 1.25 6.12 -51.93 -0.32 0.93 16 44 H 0.17 3.29 8.06 -52.48 -0.42 2.87 16 45 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -36.16 369.76 -9.38 -45.54 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.96 Total: 7.51 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.70 Total: 1.60 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.04 Total: -72.26 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.33 Total: 20.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.16 -9.38 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092347676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.027 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds