Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35533 * 125.67965 * 2 1 4 4 C 1.35447 * 108.87303 * 180.02562 * 3 2 1 5 5 C 1.39843 * 107.86359 * 359.73566 * 4 3 2 6 6 C 1.37656 * 125.67431 * 180.02562 * 2 1 3 7 7 C 1.46677 * 126.23614 * 359.97438 * 6 2 1 8 8 O 1.21690 * 120.00028 * 5.18776 * 7 6 2 9 9 N 1.34780 * 119.99706 * 185.18598 * 7 6 2 10 10 C 1.46501 * 119.99355 * 175.03370 * 9 7 6 11 11 H 1.08992 * 110.51975 * 36.09556 * 10 9 7 12 12 C 1.54766 * 110.47244 * 158.64694 * 10 9 7 13 13 C 1.53377 * 101.47081 * 94.55057 * 12 10 9 14 14 C 1.52444 * 115.88931 * 252.95111 * 13 12 10 15 15 N 1.47264 * 87.72484 * 218.51929 * 14 13 12 16 16 C 1.36941 * 135.94294 * 206.23020 * 15 14 13 17 17 H 1.07997 * 119.99975 * 6.12103 * 16 15 14 18 18 C 1.38815 * 119.99413 * 186.12927 * 16 15 14 19 19 N 1.31619 * 119.99632 * 194.97638 * 18 16 15 20 20 Si 1.86798 * 120.00450 * 14.98101 * 18 16 15 21 21 H 1.48503 * 109.47008 * 269.99848 * 20 18 16 22 22 H 1.48496 * 109.46843 * 30.00062 * 20 18 16 23 23 H 1.48496 * 109.46991 * 149.99867 * 20 18 16 24 24 C 1.47254 * 88.11085 * 26.48110 * 15 14 13 25 25 N 1.46038 * 106.82762 * 24.68143 * 13 12 10 26 26 C 1.37277 * 142.29666 * 163.78047 * 25 13 12 27 27 C 1.34515 * 106.92649 * 180.19366 * 26 25 13 28 28 N 1.33974 * 108.04886 * 359.95993 * 27 26 25 29 29 C 1.30858 * 109.35729 * 359.93794 * 28 27 26 30 30 H 1.08998 * 109.46907 * 271.17637 * 1 2 3 31 31 H 1.08998 * 109.46915 * 31.18002 * 1 2 3 32 32 H 1.08995 * 109.46839 * 151.17716 * 1 2 3 33 33 H 1.07998 * 125.56185 * 0.04660 * 3 2 1 34 34 H 1.08003 * 126.07151 * 180.02562 * 4 3 2 35 35 H 1.08002 * 126.45624 * 180.30290 * 5 4 3 36 36 H 0.96998 * 120.00146 * 355.03077 * 9 7 6 37 37 H 1.08999 * 111.02235 * 336.50072 * 12 10 9 38 38 H 1.09004 * 111.03318 * 212.59547 * 12 10 9 39 39 H 1.09000 * 113.51413 * 103.80534 * 14 13 12 40 40 H 1.08998 * 113.51255 * 333.23094 * 14 13 12 41 41 H 0.97008 * 119.99967 * 354.96005 * 19 18 16 42 42 H 1.08997 * 113.51484 * 88.23532 * 24 15 14 43 43 H 1.09002 * 113.51080 * 218.80758 * 24 15 14 44 44 H 1.08005 * 126.53901 * 0.21678 * 26 25 13 45 45 H 1.08000 * 125.98006 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5779 -0.6889 0.0052 6 6 2.2678 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0006 8 8 0.6257 -2.7650 -0.0955 9 7 2.7082 -3.5140 0.1044 10 6 2.2473 -4.9003 0.2139 11 1 1.3570 -5.0562 -0.3952 12 6 3.3697 -5.8788 -0.2083 13 6 4.0070 -6.2145 1.1458 14 6 5.3739 -5.5935 1.4103 15 7 5.7572 -6.8579 2.0607 16 6 6.6502 -7.2360 3.0276 17 1 7.2115 -6.4873 3.5668 18 6 6.8341 -8.5817 3.3143 19 7 7.4528 -8.9405 4.4193 20 14 6.2036 -9.8834 2.1322 21 1 4.8119 -10.2511 2.4972 22 1 6.2271 -9.3475 0.7475 23 1 7.0706 -11.0863 2.2122 24 6 4.7649 -7.5388 1.2121 25 7 2.9819 -5.9929 2.1621 26 6 2.6705 -6.2721 3.4696 27 6 1.4803 -5.6975 3.7200 28 7 1.0725 -5.0831 2.6015 29 6 1.9676 -5.2532 1.6622 30 1 -0.3633 0.0211 1.0274 31 1 -0.3633 0.8792 -0.5320 32 1 -0.3633 -0.9003 -0.4954 33 1 1.9082 2.1235 0.0007 34 1 4.4133 1.3611 -0.0003 35 1 4.4583 -1.3145 0.0109 36 1 3.6579 -3.3169 0.1074 37 1 4.0869 -5.3901 -0.8677 38 1 2.9548 -6.7711 -0.6772 39 1 5.3412 -4.7453 2.0941 40 1 5.9389 -5.3828 0.5024 41 1 7.8444 -8.2665 4.9966 42 1 5.1631 -7.8604 0.2498 43 1 4.2193 -8.3283 1.7289 44 1 3.2675 -6.8438 4.1648 45 1 0.9468 -5.7262 4.6586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092347676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 143.859053 kcal Electronic energy + Delta-G solvation = -30065.413269 eV Core-core repulsion = 26087.031873 eV Total energy + Delta-G solvation = -3978.381397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.74988 -42.26887 -40.45289 -40.02178 -37.00434 -35.04042 -34.08478 -33.52522 -32.15870 -30.33147 -29.95575 -28.80536 -27.36440 -27.29632 -25.89816 -23.83747 -23.03131 -22.75759 -21.60189 -21.30288 -20.69384 -20.39339 -19.56964 -18.89348 -17.89781 -17.51468 -16.74147 -16.59414 -16.35887 -16.09484 -15.94252 -15.76808 -15.43457 -15.29974 -15.15122 -14.95449 -14.61080 -14.38734 -14.21749 -14.12074 -13.78032 -13.60460 -13.30025 -13.24150 -13.15641 -12.89307 -12.83992 -12.69302 -12.15777 -12.05331 -11.52544 -11.41423 -11.12237 -11.05482 -10.88290 -10.51604 -10.40372 -9.67391 -9.47549 -9.33453 -9.17523 -8.67034 -5.52023 0.47046 0.89495 1.35870 1.46410 1.59470 1.61526 1.74044 1.84790 2.05617 2.35490 2.48200 2.51573 2.66880 2.94264 3.08833 3.17579 3.42723 3.58118 3.77016 3.93037 4.00567 4.10749 4.20439 4.36319 4.37918 4.42835 4.48951 4.49651 4.52666 4.56214 4.57602 4.64419 4.72372 4.78114 4.79338 4.94361 5.10034 5.17825 5.27645 5.29006 5.37702 5.80016 5.81661 5.89452 6.02716 6.09469 6.32770 6.43928 6.62783 7.08089 7.12361 7.27113 8.15928 8.84961 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.003185 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.346430 B = 8788.875517 C = 9329.253421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.421 5.421 3 C 0.022 3.978 4 C -0.223 4.223 5 C -0.138 4.138 6 C -0.089 4.089 7 C 0.592 3.408 8 O -0.570 6.570 9 N -0.697 5.697 10 C 0.237 3.763 11 H 0.122 0.878 12 C -0.099 4.099 13 C 0.117 3.883 14 C 0.122 3.878 15 N -0.651 5.651 16 C -0.288 4.288 17 H 0.046 0.954 18 C -0.081 4.081 19 N -0.969 5.969 20 Si 1.097 2.903 21 H -0.290 1.290 22 H -0.233 1.233 23 H -0.305 1.305 24 C 0.098 3.902 25 N -0.441 5.441 26 C -0.025 4.025 27 C -0.040 4.040 28 N -0.501 5.501 29 C 0.160 3.840 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.416 0.584 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.037 0.963 40 H 0.105 0.895 41 H 0.246 0.754 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.155 0.845 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 17.823 -16.662 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.094 5.094 3 C -0.114 4.114 4 C -0.246 4.246 5 C -0.165 4.165 6 C -0.202 4.202 7 C 0.382 3.618 8 O -0.450 6.450 9 N -0.349 5.349 10 C 0.130 3.870 11 H 0.140 0.860 12 C -0.138 4.138 13 C 0.031 3.969 14 C -0.004 4.004 15 N -0.379 5.379 16 C -0.416 4.416 17 H 0.064 0.936 18 C -0.273 4.273 19 N -0.614 5.614 20 Si 0.922 3.078 21 H -0.217 1.217 22 H -0.156 1.156 23 H -0.234 1.234 24 C -0.027 4.027 25 N -0.122 5.122 26 C -0.159 4.159 27 C -0.187 4.187 28 N -0.220 5.220 29 C -0.104 4.104 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.219 0.781 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.254 0.746 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.056 0.944 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.122 0.878 43 H 0.059 0.941 44 H 0.173 0.827 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.777 16.252 -16.794 26.636 hybrid contribution 1.779 1.012 1.992 2.856 sum -10.998 17.264 -14.802 25.261 Atomic orbital electron populations 1.22367 0.75446 1.05975 1.04025 1.44111 1.07527 1.05113 1.52626 1.22689 0.90584 0.92467 1.05660 1.21201 0.97096 0.94871 1.11450 1.21718 0.94300 0.96590 1.03912 1.20032 0.91536 0.87328 1.21299 1.17242 0.85238 0.84330 0.75023 1.90772 1.17457 1.85205 1.51562 1.45469 1.10351 1.04638 1.74476 1.19856 0.99941 0.81541 0.85680 0.85989 1.23000 0.96800 1.00825 0.93182 1.22359 0.88081 0.99526 0.86946 1.22932 0.89860 0.90010 0.97568 1.46186 1.44127 1.06240 1.41364 1.19839 1.18162 0.92956 1.10596 0.93621 1.27050 1.00659 0.99055 1.00566 1.71018 1.41971 1.35948 1.12430 0.83439 0.74881 0.73402 0.76091 1.21713 1.15617 1.23358 1.23212 0.88711 0.94269 0.96472 1.45901 1.17919 1.39323 1.09101 1.22469 0.99884 1.07727 0.85803 1.22572 0.95311 1.02388 0.98452 1.69813 1.28940 1.23343 0.99929 1.25292 0.87210 0.99074 0.98789 0.90988 0.86640 0.89620 0.78062 0.81948 0.82279 0.74635 0.82827 0.84433 0.94432 0.87771 0.94469 0.87843 0.94076 0.82707 0.79297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 10.67 127.77 1.36 2.40 16 2 N -0.42 -8.40 3.16 -534.33 -1.69 -10.09 16 3 C 0.02 0.33 11.38 83.48 0.95 1.28 16 4 C -0.22 -3.57 10.81 22.01 0.24 -3.33 16 5 C -0.14 -2.61 10.35 22.57 0.23 -2.37 16 6 C -0.09 -2.06 6.89 40.35 0.28 -1.78 16 7 C 0.59 15.54 7.76 86.45 0.67 16.21 16 8 O -0.57 -18.42 14.30 -4.32 -0.06 -18.48 16 9 N -0.70 -14.83 5.11 -445.73 -2.28 -17.11 16 10 C 0.24 5.44 3.27 45.16 0.15 5.59 16 11 H 0.12 2.80 7.60 -2.39 -0.02 2.78 16 12 C -0.10 -1.63 6.15 31.32 0.19 -1.43 16 13 C 0.12 3.26 1.64 3.93 0.01 3.27 16 14 C 0.12 3.80 8.18 83.45 0.68 4.49 16 15 N -0.65 -28.03 3.65 -738.38 -2.69 -30.72 16 16 C -0.29 -15.87 11.03 84.03 0.93 -14.94 16 17 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -61.58 13.70 21.65 0.30 -61.28 16 20 Si 1.10 50.15 25.48 68.60 1.75 51.89 16 21 H -0.29 -12.95 6.97 99.48 0.69 -12.26 16 22 H -0.23 -8.66 5.58 99.48 0.56 -8.11 16 23 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 24 C 0.10 3.35 5.15 83.54 0.43 3.78 16 25 N -0.44 -15.00 3.42 -473.26 -1.62 -16.61 16 26 C -0.03 -0.95 12.03 82.99 1.00 0.05 16 27 C -0.04 -1.42 11.86 83.51 0.99 -0.43 16 28 N -0.50 -19.02 11.25 -187.09 -2.11 -21.13 16 29 C 0.16 5.26 8.22 138.30 1.14 6.39 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.82 6.15 -2.39 -0.01 1.80 16 33 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.16 2.26 7.45 -2.91 -0.02 2.24 16 36 H 0.42 6.76 7.47 -92.71 -0.69 6.06 16 37 H 0.15 1.29 7.75 -2.39 -0.02 1.27 16 38 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 2.41 7.98 -2.39 -0.02 2.39 16 41 H 0.25 15.80 8.73 -92.70 -0.81 14.99 16 42 H 0.10 2.88 7.01 -2.39 -0.02 2.86 16 43 H 0.04 1.59 6.12 -2.39 -0.01 1.58 16 44 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 45 H 0.19 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -85.26 369.76 1.45 -83.81 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.14 Total: 24.76 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 9.71 Total: 14.96 kcal Atomic # 7 Polarization: -146.86 SS G_CDS: -10.09 Total: -156.94 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.75 Total: 51.89 kcal Total: -85.26 1.45 -83.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092347676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.670 kcal (2) G-P(sol) polarization free energy of solvation -85.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds