Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00522 * 2 1 4 4 C 1.52999 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46929 * 304.99127 * 4 3 2 6 6 C 1.52997 * 109.47317 * 65.00023 * 4 3 2 7 7 C 1.50706 * 109.46573 * 184.99948 * 4 3 2 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99762 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00258 * 180.02562 * 9 7 4 11 11 H 1.09005 * 110.85117 * 322.66418 * 10 9 7 12 12 C 1.54629 * 110.97275 * 86.44708 * 10 9 7 13 13 C 1.51279 * 104.19621 * 142.91921 * 12 10 9 14 14 O 1.21279 * 124.94309 * 163.71731 * 13 12 10 15 15 N 1.34420 * 110.11676 * 343.75033 * 13 12 10 16 16 C 1.46498 * 124.35214 * 179.57400 * 15 13 12 17 17 C 1.53941 * 113.74219 * 38.71168 * 16 15 13 18 18 N 1.47816 * 86.03909 * 222.08646 * 17 16 15 19 19 C 1.36937 * 134.45874 * 204.64598 * 18 17 16 20 20 H 1.08002 * 119.99853 * 179.86868 * 19 18 17 21 21 C 1.38811 * 119.99711 * 359.86733 * 19 18 17 22 22 N 1.31614 * 120.00263 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99525 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47164 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46785 * 119.99985 * 23 21 19 26 26 H 1.48504 * 109.46880 * 239.99698 * 23 21 19 27 27 C 1.47581 * 91.04533 * 24.55124 * 18 17 16 28 28 C 1.46764 * 111.29956 * 359.59161 * 15 13 12 29 29 H 1.08994 * 109.46919 * 300.00387 * 1 2 3 30 30 H 1.09000 * 109.47004 * 59.99806 * 1 2 3 31 31 H 1.08992 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47128 * 59.99759 * 3 2 1 33 33 H 1.08998 * 109.46441 * 300.00221 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 37 37 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 38 38 H 1.09000 * 110.48993 * 261.59902 * 12 10 9 39 39 H 1.09003 * 110.48120 * 24.10975 * 12 10 9 40 40 H 1.08998 * 112.94643 * 170.31266 * 16 15 13 41 41 H 1.08996 * 113.77338 * 336.35376 * 17 16 15 42 42 H 1.09004 * 113.76931 * 107.75333 * 17 16 15 43 43 H 0.97001 * 120.00185 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.76511 * 221.14645 * 27 18 17 45 45 H 1.09000 * 113.77287 * 89.75673 * 27 18 17 46 46 H 1.08998 * 110.24460 * 258.01790 * 28 15 13 47 47 H 1.09001 * 110.24485 * 136.01484 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7425 1.9397 -0.0006 5 1 4.1702 1.3950 0.8410 6 6 4.3173 1.3916 -1.3083 7 6 4.0822 3.4028 0.1232 8 8 3.1956 4.2265 0.2035 9 7 5.3712 3.7959 0.1436 10 6 5.7015 5.2180 0.2645 11 1 4.9933 5.8297 -0.2944 12 6 5.7547 5.6496 1.7484 13 6 6.8950 6.6421 1.8055 14 8 7.0925 7.4218 2.7132 15 7 7.6570 6.5346 0.7034 16 6 8.8402 7.3551 0.4332 17 6 9.6987 7.6344 1.6802 18 7 9.8129 9.0155 1.1661 19 6 10.7234 10.0259 1.3254 20 1 10.5746 10.9709 0.8240 21 6 11.8375 9.8355 2.1312 22 7 12.0186 8.6842 2.7425 23 14 13.0792 11.2141 2.3489 24 1 12.6482 12.3973 1.5619 25 1 13.1661 11.5795 3.7856 26 1 14.4105 10.7611 1.8719 27 6 8.5537 8.8675 0.4109 28 6 7.1511 5.4899 -0.1948 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8033 2.2371 0.8899 33 1 1.8033 2.2370 -0.8900 34 1 4.0716 0.3334 -1.3978 35 1 5.4004 1.5148 -1.3088 36 1 3.8896 1.9364 -2.1499 37 1 6.0802 3.1371 0.0790 38 1 4.8191 6.1262 2.0409 39 1 5.9609 4.7914 2.3881 40 1 9.4136 7.0044 -0.4248 41 1 9.1487 7.5588 2.6182 42 1 10.6430 7.0902 1.6943 43 1 12.7973 8.5510 3.3053 44 1 8.5855 9.3060 -0.5865 45 1 7.6665 9.1549 0.9752 46 1 7.7529 4.5862 -0.0989 47 1 7.1602 5.8424 -1.2262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108522083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -7.482092 kcal Electronic energy + Delta-G solvation = -27333.571257 eV Core-core repulsion = 23451.778416 eV Total energy + Delta-G solvation = -3881.792841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86916 -39.86667 -37.30632 -36.48683 -35.03090 -34.14477 -32.16466 -30.35984 -29.51685 -27.73228 -27.55387 -27.09147 -24.73840 -24.31415 -23.34199 -21.65148 -20.70607 -20.24021 -18.35530 -17.80724 -17.03109 -16.72776 -16.49579 -16.26001 -15.89513 -15.48753 -15.01541 -14.73309 -14.55676 -14.29327 -14.05333 -13.92111 -13.88789 -13.57482 -13.53299 -13.37334 -13.20772 -12.75903 -12.54619 -12.43535 -12.09729 -11.90467 -11.84996 -11.71750 -11.60077 -11.40606 -11.17225 -10.85321 -10.70424 -10.48739 -10.25082 -10.12360 -9.95509 -9.71847 -9.49459 -9.18747 -8.67060 -8.20196 -8.13396 -6.81489 -5.72430 -3.04219 1.14211 2.08421 2.22222 2.68025 2.91235 3.28419 3.42263 3.47694 3.49907 4.05338 4.15224 4.29064 4.38120 4.47479 4.51437 4.67562 4.68696 4.75635 4.79282 4.87064 5.03836 5.14562 5.23031 5.24305 5.30526 5.32801 5.35114 5.45591 5.53692 5.62164 5.64876 5.68435 5.69679 5.83905 6.07729 6.28796 6.51719 6.57696 6.86613 7.04942 7.28907 7.47478 7.58459 7.62462 7.79597 8.01174 8.53675 9.08559 9.74713 10.63661 11.44999 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041663 B = 0.001782 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.897543 B =15711.173093 C =15818.849804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.067 4.067 4 C -0.095 4.095 5 H 0.109 0.891 6 C -0.147 4.147 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.717 5.717 10 C 0.135 3.865 11 H 0.111 0.889 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.507 6.507 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.404 0.596 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.069 -21.326 -10.169 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.215 4.215 4 C -0.117 4.117 5 H 0.127 0.873 6 C -0.205 4.205 7 C 0.310 3.690 8 O -0.409 6.409 9 N -0.370 5.370 10 C 0.029 3.971 11 H 0.128 0.872 12 C -0.209 4.209 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.016 4.016 28 C -0.025 4.025 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.577 -20.964 -9.518 30.222 hybrid contribution 0.129 1.391 0.220 1.414 sum -19.448 -19.573 -9.298 29.117 Atomic orbital electron populations 1.23391 0.93885 1.06549 1.05180 1.86745 1.07769 1.10905 1.98094 1.23216 0.97682 0.94041 1.06602 1.21046 0.95144 0.93403 1.02102 0.87336 1.21869 1.00968 1.02660 0.94991 1.20458 0.82452 0.90592 0.75484 1.90739 1.46915 1.54510 1.48765 1.45913 1.07796 1.08087 1.75159 1.21815 0.96767 0.82272 0.96202 0.87158 1.22826 0.99981 1.00542 0.97506 1.20591 0.83464 0.83831 0.81995 1.90794 1.72287 1.38880 1.36120 1.48501 1.28753 1.36456 1.20420 1.24087 0.84589 0.89664 1.02084 1.22786 0.96116 0.85417 0.92964 1.45714 1.20236 1.12558 1.54610 1.19043 0.98778 0.92451 1.24448 0.90119 1.24797 0.98765 0.97489 0.99432 1.69835 1.29308 1.22930 1.34591 0.86026 0.81061 0.81017 0.77541 1.20445 1.21731 1.21726 1.22926 0.91112 0.91969 0.95578 1.22188 0.92484 0.92450 0.95421 0.90347 0.90363 0.88004 0.89025 0.89254 0.90219 0.91591 0.91713 0.76006 0.87863 0.87821 0.87614 0.92610 0.91149 0.93712 0.93924 0.94216 0.90850 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 101.05 1.09 0.53 16 2 S -0.26 -1.73 21.19 -107.50 -2.28 -4.00 16 3 C -0.07 -0.45 4.73 37.16 0.18 -0.28 16 4 C -0.09 -0.56 2.72 -91.77 -0.25 -0.81 16 5 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.15 -0.66 8.92 37.16 0.33 -0.33 16 7 C 0.53 4.33 7.15 -10.98 -0.08 4.25 16 8 O -0.53 -6.49 15.66 5.56 0.09 -6.41 16 9 N -0.72 -4.79 5.08 -52.22 -0.27 -5.06 16 10 C 0.14 1.23 3.43 -66.30 -0.23 1.00 16 11 H 0.11 1.10 7.72 -51.93 -0.40 0.70 16 12 C -0.17 -1.98 6.59 -26.74 -0.18 -2.15 16 13 C 0.52 8.68 7.42 -10.86 -0.08 8.60 16 14 O -0.51 -11.33 14.61 5.56 0.08 -11.25 16 15 N -0.61 -9.14 3.15 -166.64 -0.53 -9.67 16 16 C 0.10 1.85 4.81 -70.14 -0.34 1.52 16 17 C 0.15 3.81 6.90 -2.84 -0.02 3.79 16 18 N -0.60 -16.34 3.70 -177.86 -0.66 -17.00 16 19 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -28.18 11.39 55.49 0.63 -27.55 16 23 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 C 0.11 2.43 8.44 -2.97 -0.03 2.40 16 28 C 0.10 0.94 7.07 -3.12 -0.02 0.91 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.71 7.95 -51.93 -0.41 0.29 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.38 7.13 -51.93 -0.37 0.01 16 35 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 1.62 7.78 -40.82 -0.32 1.30 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.06 1.54 5.72 -51.93 -0.30 1.24 16 42 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.93 7.25 -51.93 -0.38 0.55 16 46 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -37.17 392.48 -9.45 -46.63 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.54 Total: -1.86 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 0.12 Total: 12.53 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.82 Total: -59.27 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.17 Total: -17.65 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.28 Total: -4.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.17 -9.45 -46.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.145 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds