Wall clock time and date at job start Sat Apr 11 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00021 * 2 1 4 4 H 1.09008 * 109.46820 * 55.00019 * 3 2 1 5 5 C 1.53008 * 109.47012 * 295.00511 * 3 2 1 6 6 C 1.52991 * 109.47327 * 175.00073 * 3 2 1 7 7 C 1.50702 * 109.47173 * 295.00380 * 6 3 2 8 8 O 1.21277 * 119.99870 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99758 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.88278 * 31.19078 * 10 9 7 12 12 C 1.54619 * 110.96855 * 267.37634 * 10 9 7 13 13 C 1.51294 * 104.25793 * 266.46050 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 89.99413 * 23 21 19 25 25 H 1.48498 * 109.47093 * 210.00245 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99904 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 H 1.08999 * 109.47294 * 299.99521 * 1 2 3 30 30 H 1.08994 * 109.47380 * 59.99945 * 1 2 3 31 31 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47278 * 59.99921 * 5 3 2 33 33 H 1.09000 * 109.46444 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.46545 * 299.99456 * 5 3 2 35 35 H 1.09002 * 109.47589 * 175.00020 * 6 3 2 36 36 H 1.09002 * 109.47059 * 55.00438 * 6 3 2 37 37 H 0.96997 * 120.00527 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.49280 * 25.35844 * 12 10 9 39 39 H 1.09001 * 110.48540 * 147.87476 * 12 10 9 40 40 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 41 41 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 42 42 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 43 43 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 45 45 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 46 46 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 47 47 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7426 2.4016 -1.3074 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9672 2.2462 9 7 5.4965 1.4789 1.8016 10 6 5.9387 0.9794 3.1059 11 1 5.3065 0.1576 3.4420 12 6 5.9701 2.1172 4.1524 13 6 7.3947 2.6247 4.1085 14 8 7.7699 3.6822 4.5689 15 7 8.1834 1.7344 3.4822 16 6 9.6191 1.9177 3.2556 17 6 10.0089 3.3602 2.8850 18 7 10.1898 3.5751 4.3361 19 6 10.1500 4.6716 5.1555 20 1 10.3192 4.5594 6.2162 21 6 9.8923 5.9272 4.6228 22 7 9.6856 6.0638 3.3301 23 14 9.8387 7.4230 5.7404 24 1 11.1963 8.0167 5.8382 25 1 8.8986 8.4265 5.1796 26 1 9.3784 7.0148 7.0920 27 6 10.4279 2.1341 4.5475 28 6 7.4227 0.5525 3.0602 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.6634 2.2779 -1.3969 33 1 1.9875 3.4637 -1.3071 34 1 2.2353 1.9150 -2.1491 35 1 3.9902 2.9976 0.0366 36 1 4.2338 1.3805 -0.6660 37 1 6.1426 1.8469 1.1787 38 1 5.2720 2.9078 3.8776 39 1 5.7355 1.7301 5.1440 40 1 10.0442 1.1641 2.5927 41 1 10.9332 3.4319 2.3116 42 1 9.1925 3.9385 2.4523 43 1 9.5058 6.9413 2.9577 44 1 9.9454 1.7353 5.4399 45 1 11.4755 1.8450 4.4635 46 1 7.7019 0.2665 2.0461 47 1 7.5998 -0.2751 3.7471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108538006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:59 Heat of formation + Delta-G solvation = 16.073433 kcal Electronic energy + Delta-G solvation = -28405.851665 eV Core-core repulsion = 24525.080268 eV Total energy + Delta-G solvation = -3880.771397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49182 -39.36265 -37.08935 -35.86946 -34.76989 -33.62085 -31.88286 -30.27738 -29.33587 -28.02951 -27.31756 -26.69684 -24.70308 -23.29034 -22.86239 -21.32674 -20.59081 -20.17508 -17.70122 -17.29653 -16.95405 -16.73865 -16.52510 -15.83918 -15.57526 -14.84578 -14.78085 -14.52458 -14.33925 -14.01626 -13.93899 -13.66079 -13.59438 -13.37495 -13.18954 -13.01585 -12.64306 -12.49983 -12.38245 -12.25985 -11.88417 -11.69158 -11.63832 -11.52563 -11.46780 -11.11839 -11.03099 -10.66739 -10.46565 -10.07457 -10.02939 -9.84778 -9.67733 -9.31371 -9.25316 -8.70344 -8.33985 -7.87614 -7.66264 -6.54616 -5.46381 -2.72962 1.49743 2.38186 2.60246 3.01839 3.52219 3.56219 3.57450 3.59872 3.61849 4.29581 4.41168 4.55162 4.67772 4.74555 4.85023 4.89289 4.91545 4.95250 5.04968 5.14628 5.23032 5.28170 5.31277 5.33961 5.44433 5.53234 5.57473 5.60055 5.71865 5.76086 5.80708 5.85568 5.98255 6.06395 6.36238 6.44862 6.57574 6.60239 6.96870 7.33028 7.42393 7.57958 7.78874 7.94629 8.17515 8.25097 9.20663 9.31261 10.03075 10.86213 11.72898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002656 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.706173 B =10541.029468 C =11302.756668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.240 6.240 3 C -0.043 4.043 4 H 0.094 0.906 5 C -0.149 4.149 6 C -0.126 4.126 7 C 0.512 3.488 8 O -0.519 6.519 9 N -0.720 5.720 10 C 0.136 3.864 11 H 0.112 0.888 12 C -0.167 4.167 13 C 0.488 3.512 14 O -0.424 6.424 15 N -0.610 5.610 16 C 0.104 3.896 17 C 0.158 3.842 18 N -0.588 5.588 19 C -0.181 4.181 20 H 0.069 0.931 21 C -0.001 4.001 22 N -0.923 5.923 23 Si 0.902 3.098 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.285 1.285 27 C 0.103 3.897 28 C 0.104 3.896 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.245 0.755 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -14.828 -11.164 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.014 6.014 3 C -0.173 4.173 4 H 0.112 0.888 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.373 5.373 10 C 0.031 3.969 11 H 0.130 0.870 12 C -0.209 4.209 13 C 0.271 3.729 14 O -0.289 6.289 15 N -0.348 5.348 16 C 0.000 4.000 17 C 0.032 3.968 18 N -0.314 5.314 19 C -0.309 4.309 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.573 5.573 23 Si 0.734 3.266 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.211 1.211 27 C -0.025 4.025 28 C -0.021 4.021 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.449 -15.054 -10.219 23.234 hybrid contribution -0.509 2.011 0.302 2.097 sum -14.958 -13.043 -9.917 22.185 Atomic orbital electron populations 1.23372 0.95064 1.06176 1.04625 1.86868 1.06506 1.10292 1.97740 1.22870 0.97776 0.95064 1.01540 0.88763 1.22114 1.01488 1.01126 0.96050 1.21543 0.94602 1.04091 0.96463 1.20453 0.82235 0.78678 0.88908 1.90753 1.52497 1.44281 1.51848 1.45979 1.08630 1.64281 1.18389 1.21776 0.94904 0.96951 0.83289 0.87038 1.22825 0.97780 0.99746 1.00571 1.20715 0.87057 0.85260 0.79891 1.91180 1.76841 1.19375 1.41530 1.47845 1.07705 1.19113 1.60123 1.22919 0.79063 0.99995 0.98056 1.22548 0.98212 0.88194 0.87879 1.45586 1.81773 1.00989 1.03045 1.18641 1.39167 0.84117 0.88993 0.91340 1.24488 1.02763 0.96706 0.95682 1.69770 1.56054 1.21396 1.10044 0.86261 0.76856 0.83588 0.79886 1.22328 1.22078 1.21081 1.22985 0.96028 0.87835 0.95623 1.22165 0.89732 0.89356 1.00847 0.90565 0.90846 0.88381 0.92271 0.91395 0.91171 0.87248 0.87966 0.76192 0.88736 0.88113 0.90335 0.95182 0.90531 0.94545 0.94269 0.94456 0.90550 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.45 101.05 1.06 0.14 16 2 S -0.24 -2.45 20.24 -107.50 -2.18 -4.63 16 3 C -0.04 -0.38 2.44 -26.73 -0.07 -0.44 16 4 H 0.09 0.94 7.96 -51.92 -0.41 0.53 16 5 C -0.15 -0.95 9.10 37.16 0.34 -0.62 16 6 C -0.13 -1.05 5.17 -27.89 -0.14 -1.19 16 7 C 0.51 5.81 7.54 -10.98 -0.08 5.73 16 8 O -0.52 -7.55 14.43 5.56 0.08 -7.47 16 9 N -0.72 -7.67 5.12 -52.23 -0.27 -7.94 16 10 C 0.14 1.57 3.53 -66.30 -0.23 1.34 16 11 H 0.11 1.25 7.54 -51.93 -0.39 0.86 16 12 C -0.17 -2.48 6.58 -26.74 -0.18 -2.66 16 13 C 0.49 9.55 7.49 -10.86 -0.08 9.46 16 14 O -0.42 -11.05 13.05 5.55 0.07 -10.98 16 15 N -0.61 -9.95 3.16 -166.63 -0.53 -10.48 16 16 C 0.10 1.86 4.93 -70.14 -0.35 1.52 16 17 C 0.16 3.70 6.57 -2.84 -0.02 3.68 16 18 N -0.59 -15.43 2.18 -177.87 -0.39 -15.82 16 19 C -0.18 -5.37 8.88 -15.06 -0.13 -5.50 16 20 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 -0.04 5.36 -17.43 -0.09 -0.14 16 22 N -0.92 -28.53 11.39 55.49 0.63 -27.89 16 23 Si 0.90 23.95 29.55 -169.99 -5.02 18.93 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 27 C 0.10 2.13 8.51 -2.96 -0.03 2.11 16 28 C 0.10 1.15 6.97 -3.13 -0.02 1.13 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.44 7.14 -51.93 -0.37 0.07 16 31 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.83 8.66 -40.82 -0.35 3.47 16 38 H 0.09 1.50 8.09 -51.93 -0.42 1.08 16 39 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 2.05 6.78 -51.93 -0.35 1.69 16 43 H 0.24 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -37.68 389.00 -9.46 -47.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.70 Total: -1.29 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.03 Total: 14.56 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.55 Total: -62.13 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.15 Total: -18.45 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.93 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.18 Total: -4.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.68 -9.46 -47.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.218 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds