Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00021 * 2 1 4 4 H 1.09008 * 109.46820 * 55.00019 * 3 2 1 5 5 C 1.53008 * 109.47012 * 295.00511 * 3 2 1 6 6 C 1.52991 * 109.47327 * 175.00073 * 3 2 1 7 7 C 1.50702 * 109.47173 * 295.00380 * 6 3 2 8 8 O 1.21277 * 119.99870 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99758 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.88278 * 31.19078 * 10 9 7 12 12 C 1.54619 * 110.96855 * 267.37634 * 10 9 7 13 13 C 1.51294 * 104.25793 * 266.46050 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 89.99413 * 23 21 19 25 25 H 1.48498 * 109.47093 * 210.00245 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99904 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 H 1.08999 * 109.47294 * 299.99521 * 1 2 3 30 30 H 1.08994 * 109.47380 * 59.99945 * 1 2 3 31 31 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47278 * 59.99921 * 5 3 2 33 33 H 1.09000 * 109.46444 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.46545 * 299.99456 * 5 3 2 35 35 H 1.09002 * 109.47589 * 175.00020 * 6 3 2 36 36 H 1.09002 * 109.47059 * 55.00438 * 6 3 2 37 37 H 0.96997 * 120.00527 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.49280 * 25.35844 * 12 10 9 39 39 H 1.09001 * 110.48540 * 147.87476 * 12 10 9 40 40 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 41 41 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 42 42 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 43 43 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 45 45 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 46 46 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 47 47 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7426 2.4016 -1.3074 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9672 2.2462 9 7 5.4965 1.4789 1.8016 10 6 5.9387 0.9794 3.1059 11 1 5.3065 0.1576 3.4420 12 6 5.9701 2.1172 4.1524 13 6 7.3947 2.6247 4.1085 14 8 7.7699 3.6822 4.5689 15 7 8.1834 1.7344 3.4822 16 6 9.6191 1.9177 3.2556 17 6 10.0089 3.3602 2.8850 18 7 10.1898 3.5751 4.3361 19 6 10.1500 4.6716 5.1555 20 1 10.3192 4.5594 6.2162 21 6 9.8923 5.9272 4.6228 22 7 9.6856 6.0638 3.3301 23 14 9.8387 7.4230 5.7404 24 1 11.1963 8.0167 5.8382 25 1 8.8986 8.4265 5.1796 26 1 9.3784 7.0148 7.0920 27 6 10.4279 2.1341 4.5475 28 6 7.4227 0.5525 3.0602 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.6634 2.2779 -1.3969 33 1 1.9875 3.4637 -1.3071 34 1 2.2353 1.9150 -2.1491 35 1 3.9902 2.9976 0.0366 36 1 4.2338 1.3805 -0.6660 37 1 6.1426 1.8469 1.1787 38 1 5.2720 2.9078 3.8776 39 1 5.7355 1.7301 5.1440 40 1 10.0442 1.1641 2.5927 41 1 10.9332 3.4319 2.3116 42 1 9.1925 3.9385 2.4523 43 1 9.5058 6.9413 2.9577 44 1 9.9454 1.7353 5.4399 45 1 11.4755 1.8450 4.4635 46 1 7.7019 0.2665 2.0461 47 1 7.5998 -0.2751 3.7471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108538006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -10.457734 kcal Electronic energy + Delta-G solvation = -28407.002142 eV Core-core repulsion = 24525.080268 eV Total energy + Delta-G solvation = -3881.921874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72165 -40.49036 -38.66169 -37.29552 -35.47928 -34.86877 -33.86541 -31.54577 -30.03985 -29.15299 -28.77977 -27.82291 -26.46667 -25.12102 -23.65029 -22.24841 -22.05676 -21.30632 -19.20126 -18.67630 -18.16342 -17.85734 -17.49239 -17.19890 -16.76504 -16.43346 -15.99732 -15.88687 -15.49292 -15.20350 -15.14755 -14.95958 -14.66035 -14.45598 -14.23886 -14.08805 -13.91458 -13.61804 -13.29142 -13.20570 -13.18067 -12.97497 -12.83703 -12.76722 -12.60467 -12.50990 -12.38392 -12.31989 -12.13930 -11.92018 -11.56831 -11.35447 -10.84853 -10.76160 -10.66290 -10.36409 -9.90631 -9.31285 -8.60662 -8.42197 -7.70742 -4.94403 0.84076 1.39580 1.42798 1.49192 1.72508 1.73306 2.03220 2.19984 2.27008 2.57085 3.44797 3.49705 3.56086 3.63501 3.67263 3.76004 3.92969 3.99964 4.22936 4.27197 4.30546 4.34009 4.37988 4.48997 4.58631 4.65615 4.67557 4.71030 4.74042 4.78073 4.84525 4.88688 4.90092 4.95611 4.98381 5.02516 5.26629 5.28279 5.37441 5.53908 5.64359 6.08541 6.18438 6.55109 6.57937 7.10267 7.31625 7.73981 7.83892 8.75840 9.47725 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002656 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.706173 B =10541.029468 C =11302.756668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.294 6.294 3 C -0.034 4.034 4 H 0.076 0.924 5 C -0.143 4.143 6 C -0.123 4.123 7 C 0.509 3.491 8 O -0.553 6.553 9 N -0.716 5.716 10 C 0.148 3.852 11 H 0.124 0.876 12 C -0.158 4.158 13 C 0.477 3.523 14 O -0.502 6.502 15 N -0.606 5.606 16 C 0.135 3.865 17 C 0.153 3.847 18 N -0.619 5.619 19 C -0.178 4.178 20 H 0.056 0.944 21 C -0.059 4.059 22 N -0.947 5.947 23 Si 0.954 3.046 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.284 1.284 27 C 0.101 3.899 28 C 0.107 3.893 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.411 0.589 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.028 0.972 42 H 0.036 0.964 43 H 0.235 0.765 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.110 0.890 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -17.324 -12.523 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.069 6.069 3 C -0.163 4.163 4 H 0.094 0.906 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.296 3.704 8 O -0.431 6.431 9 N -0.368 5.368 10 C 0.042 3.958 11 H 0.141 0.859 12 C -0.200 4.200 13 C 0.263 3.737 14 O -0.374 6.374 15 N -0.342 5.342 16 C 0.031 3.969 17 C 0.027 3.973 18 N -0.345 5.345 19 C -0.307 4.307 20 H 0.074 0.926 21 C -0.251 4.251 22 N -0.599 5.599 23 Si 0.786 3.214 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.210 1.210 27 C -0.025 4.025 28 C -0.015 4.015 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.128 0.872 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.702 -17.634 -11.606 25.726 hybrid contribution -0.467 2.685 0.758 2.828 sum -15.169 -14.950 -10.848 23.902 Atomic orbital electron populations 1.23388 0.92466 1.06991 1.05256 1.86967 1.09597 1.12458 1.97855 1.22863 0.97878 0.93523 1.02080 0.90597 1.22077 1.01821 1.01468 0.94811 1.21615 0.94499 1.05107 0.95143 1.20965 0.81968 0.77854 0.89579 1.90739 1.53349 1.45872 1.53126 1.45987 1.08762 1.63981 1.18116 1.21711 0.95795 0.95556 0.82695 0.85859 1.22736 0.94242 1.00434 1.02584 1.21467 0.89007 0.84528 0.78721 1.91137 1.78619 1.22689 1.44946 1.47947 1.07301 1.20195 1.58737 1.22587 0.79811 0.97822 0.96716 1.22494 0.96867 0.91602 0.86358 1.45894 1.81956 1.02400 1.04233 1.18785 1.37230 0.85656 0.89064 0.92582 1.25110 1.04030 0.99023 0.96934 1.69945 1.57901 1.20890 1.11152 0.85418 0.76829 0.80809 0.78363 1.21471 1.22749 1.20952 1.23222 0.97760 0.84599 0.96950 1.22503 0.88054 0.87587 1.03402 0.90895 0.89199 0.87514 0.91803 0.90415 0.90508 0.85687 0.86088 0.75328 0.90422 0.87042 0.84457 0.95465 0.94545 0.95601 0.94771 0.91991 0.87229 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.45 113.37 1.18 -0.34 16 2 S -0.29 -5.71 20.24 -56.49 -1.14 -6.86 16 3 C -0.03 -0.56 2.44 30.59 0.07 -0.48 16 4 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 5 C -0.14 -1.55 9.10 71.98 0.66 -0.89 16 6 C -0.12 -1.83 5.17 29.85 0.15 -1.67 16 7 C 0.51 10.80 7.54 87.66 0.66 11.46 16 8 O -0.55 -15.64 14.43 -3.02 -0.04 -15.69 16 9 N -0.72 -13.63 5.12 -437.54 -2.24 -15.87 16 10 C 0.15 3.01 3.53 46.05 0.16 3.18 16 11 H 0.12 2.37 7.54 -2.39 -0.02 2.35 16 12 C -0.16 -4.58 6.58 30.59 0.20 -4.37 16 13 C 0.48 18.61 7.49 87.90 0.66 19.27 16 14 O -0.50 -27.16 13.05 -3.04 -0.04 -27.20 16 15 N -0.61 -18.23 3.16 -799.68 -2.52 -20.75 16 16 C 0.14 4.44 4.93 46.75 0.23 4.67 16 17 C 0.15 7.15 6.57 86.44 0.57 7.72 16 18 N -0.62 -32.75 2.18 -716.67 -1.57 -34.31 16 19 C -0.18 -10.83 8.88 84.03 0.75 -10.08 16 20 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 21 C -0.06 -3.67 5.36 84.86 0.45 -3.21 16 22 N -0.95 -60.72 11.39 21.65 0.25 -60.47 16 23 Si 0.95 50.90 29.55 68.60 2.03 52.93 16 24 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 25 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 26 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 27 C 0.10 3.99 8.51 86.49 0.74 4.72 16 28 C 0.11 1.89 6.97 86.83 0.61 2.49 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.90 7.14 -2.39 -0.02 0.88 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.63 6.92 -2.39 -0.02 0.62 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 6.72 8.66 -92.71 -0.80 5.92 16 38 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 39 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.99 6.78 -2.39 -0.02 1.98 16 43 H 0.23 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.11 1.35 8.08 -2.38 -0.02 1.33 16 47 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -88.16 389.00 1.98 -86.18 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.17 Total: 9.59 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 7.09 Total: 32.46 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -6.08 Total: -131.41 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.08 Total: -42.89 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.03 Total: 52.93 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.14 Total: -6.86 kcal Total: -88.16 1.98 -86.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.726 kcal (2) G-P(sol) polarization free energy of solvation -88.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds