Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99854 * 2 1 4 4 O 1.21277 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00035 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47255 * 300.00337 * 5 3 2 7 7 C 1.53011 * 109.46880 * 59.99676 * 5 3 2 8 8 N 1.46896 * 109.47351 * 179.97438 * 5 3 2 9 9 C 1.50652 * 110.99905 * 69.63927 * 8 5 3 10 10 H 1.09003 * 115.87905 * 296.65538 * 9 8 5 11 11 C 1.55842 * 101.02949 * 170.23966 * 9 8 5 12 12 C 1.54845 * 103.51934 * 327.00548 * 11 9 8 13 13 C 1.50645 * 111.00164 * 177.73393 * 8 5 3 14 14 H 1.08998 * 115.88175 * 63.34860 * 13 8 5 15 15 C 1.55853 * 101.02932 * 297.65332 * 13 8 5 16 16 H 1.08999 * 110.61512 * 208.49942 * 15 13 8 17 17 N 1.46496 * 110.61123 * 85.51244 * 15 13 8 18 18 C 1.34779 * 120.00229 * 167.81945 * 17 15 13 19 19 O 1.21285 * 119.99449 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00370 * 179.97438 * 18 17 15 21 21 S 1.81001 * 109.47191 * 180.02562 * 20 18 17 22 22 C 1.76195 * 99.99888 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.38800 * 119.99773 * 180.02562 * 22 21 20 25 25 N 1.31630 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00014 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47143 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47482 * 119.99520 * 26 24 22 29 29 H 1.48502 * 109.47312 * 240.00218 * 26 24 22 30 30 C 1.54843 * 103.51758 * 327.00986 * 15 13 8 31 31 H 1.09005 * 109.47110 * 60.00569 * 1 2 3 32 32 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47237 * 300.00168 * 1 2 3 34 34 H 0.96995 * 119.99870 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.46765 * 59.99745 * 7 5 3 36 36 H 1.09003 * 109.46940 * 300.00049 * 7 5 3 37 37 H 1.09000 * 109.46693 * 179.97438 * 7 5 3 38 38 H 1.08999 * 110.61461 * 85.51743 * 11 9 8 39 39 H 1.09004 * 110.61547 * 208.50540 * 11 9 8 40 40 H 1.08992 * 110.61617 * 241.48985 * 12 11 9 41 41 H 1.08998 * 110.74235 * 118.56944 * 12 11 9 42 42 H 0.97004 * 120.00630 * 347.82182 * 17 15 13 43 43 H 1.09002 * 109.46972 * 300.00359 * 20 18 17 44 44 H 1.09001 * 109.46716 * 60.00350 * 20 18 17 45 45 H 0.97002 * 119.99939 * 180.02562 * 25 24 22 46 46 H 1.08995 * 110.60786 * 241.48880 * 30 15 13 47 47 H 1.08998 * 110.61600 * 118.50108 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 1 4.0088 0.6536 0.8907 7 6 4.1563 0.4456 -1.2484 8 7 4.1355 2.5522 -0.0002 9 6 3.8536 3.2252 1.3179 10 1 2.8012 3.3425 1.5767 11 6 4.6735 4.5413 1.1620 12 6 5.8886 4.1113 0.3040 13 6 5.6403 2.5928 0.0560 14 1 6.1603 2.1538 -0.7955 15 6 5.9059 1.9099 1.4316 16 1 6.8341 2.2771 1.8695 17 7 5.9441 0.4528 1.2852 18 6 6.4007 -0.3142 2.2950 19 8 6.7795 0.2019 3.3250 20 6 6.4394 -1.8132 2.1446 21 16 7.0964 -2.5548 3.6594 22 6 7.0328 -4.2594 3.2180 23 1 6.6629 -4.5523 2.2465 24 6 7.4579 -5.2258 4.1190 25 7 7.9092 -4.8689 5.3029 26 14 7.3898 -7.0331 3.6515 27 1 6.8476 -7.1684 2.2756 28 1 8.7574 -7.6096 3.7028 29 1 6.5108 -7.7580 4.6039 30 6 4.6908 2.3399 2.2897 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.9499 -0.8400 0.0004 35 1 3.7932 0.9592 -2.1386 36 1 3.7930 -0.5821 -1.2482 37 1 5.2463 0.4460 -1.2481 38 1 4.0869 5.2998 0.6437 39 1 5.0012 4.9068 2.1353 40 1 6.8185 4.2637 0.8518 41 1 5.9070 4.6562 -0.6398 42 1 5.6408 0.0399 0.4615 43 1 5.4311 -2.1866 1.9654 44 1 7.0796 -2.0775 1.3029 45 1 8.2066 -5.5443 5.9324 46 1 5.0168 2.9201 3.1528 47 1 4.1170 1.4689 2.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110300653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = -31.015832 kcal Electronic energy + Delta-G solvation = -28858.703402 eV Core-core repulsion = 24975.890061 eV Total energy + Delta-G solvation = -3882.813341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87819 -39.50453 -38.67734 -34.87615 -34.43316 -33.69110 -32.48464 -30.43499 -29.91284 -29.03672 -27.66928 -27.10349 -25.53144 -24.02249 -22.39237 -21.05192 -20.70314 -19.88460 -19.69184 -17.95779 -17.28527 -17.21961 -16.57671 -16.33087 -15.76351 -15.44011 -14.88366 -14.85928 -14.81905 -14.49397 -14.06472 -13.98937 -13.63039 -13.25491 -13.07264 -12.78806 -12.67348 -12.61848 -12.57337 -12.54912 -12.30485 -11.88030 -11.75788 -11.65434 -11.46223 -11.26052 -11.11869 -11.07802 -10.91353 -10.82700 -10.49279 -9.92333 -9.86297 -9.45875 -9.36532 -9.13679 -9.04474 -8.71102 -8.29848 -6.56505 -6.27368 -3.98434 2.46511 2.84812 2.92994 2.97805 3.17146 3.23415 3.27315 3.55372 3.61949 4.14548 4.27485 4.35577 4.44352 4.56380 4.70852 4.83406 4.89232 4.94499 4.96931 5.05046 5.08014 5.12286 5.18435 5.22768 5.24397 5.30112 5.35016 5.48158 5.49717 5.53317 5.60517 5.72724 5.77362 5.80135 5.86992 5.97063 6.00963 6.02991 6.05442 6.15194 6.37011 6.53671 6.63167 7.23953 7.53438 7.55477 8.03634 8.29397 8.50282 9.18131 10.80045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003112 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.265577 B = 8994.120931 C =10380.669061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.738 5.738 3 C 0.522 3.478 4 O -0.524 6.524 5 C 0.018 3.982 6 H 0.098 0.902 7 C -0.151 4.151 8 N -0.467 5.467 9 C 0.051 3.949 10 H 0.122 0.878 11 C -0.114 4.114 12 C -0.109 4.109 13 C 0.039 3.961 14 H 0.121 0.879 15 C 0.115 3.885 16 H 0.095 0.905 17 N -0.739 5.739 18 C 0.529 3.471 19 O -0.510 6.510 20 C -0.155 4.155 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.279 1.279 29 H -0.280 1.280 30 C -0.164 4.164 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.402 0.598 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.396 0.604 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.083 0.917 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 13.695 -14.516 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.308 3.692 4 O -0.399 6.399 5 C -0.094 4.094 6 H 0.115 0.885 7 C -0.208 4.208 8 N -0.190 5.190 9 C -0.057 4.057 10 H 0.140 0.860 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.070 4.070 14 H 0.139 0.861 15 C 0.009 3.991 16 H 0.113 0.887 17 N -0.397 5.397 18 C 0.315 3.685 19 O -0.383 6.383 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.205 1.205 30 C -0.204 4.204 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.084 15.529 -13.150 22.710 hybrid contribution -0.096 -3.039 -1.076 3.226 sum -10.180 12.490 -14.227 21.495 Atomic orbital electron populations 1.21518 0.79494 1.02283 1.02210 1.45808 1.07822 1.08804 1.76621 1.20420 0.89544 0.83648 0.75631 1.90678 1.70042 1.31087 1.48044 1.22281 0.92533 0.93228 1.01368 0.88453 1.21917 1.01740 1.00000 0.97186 1.67661 1.07229 1.11673 1.32416 1.24563 0.99703 0.94192 0.87208 0.86030 1.22596 0.96029 0.96628 0.99936 1.22514 0.98306 0.93256 1.00671 1.24806 0.89364 0.97125 0.95716 0.86148 1.22755 0.99645 0.80332 0.96414 0.88687 1.46610 1.67775 1.06350 1.18947 1.20401 0.76092 0.88915 0.83112 1.90710 1.45152 1.74658 1.27756 1.23552 1.05300 0.93608 1.08091 1.85441 1.82403 1.02629 1.12642 1.22897 1.50053 0.91317 1.04206 0.90882 1.24993 0.94478 0.99601 0.94469 1.70024 1.39801 1.34254 1.06110 0.86121 0.78026 0.82798 0.78569 1.19615 1.20531 1.20544 1.23791 0.96495 1.00725 0.99369 0.92292 0.90587 0.92290 0.76413 0.90634 0.91198 0.91254 0.90872 0.90994 0.90754 0.90512 0.76619 0.89426 0.89212 0.92186 0.89879 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.74 -6.40 5.61 -67.08 -0.38 -6.77 16 3 C 0.52 5.94 6.95 -10.99 -0.08 5.87 16 4 O -0.52 -7.74 14.84 5.56 0.08 -7.66 16 5 C 0.02 0.18 1.67 -68.86 -0.11 0.07 16 6 H 0.10 1.04 3.62 -51.93 -0.19 0.86 16 7 C -0.15 -1.11 8.12 37.16 0.30 -0.81 16 8 N -0.47 -4.89 5.07 -199.16 -1.01 -5.90 16 9 C 0.05 0.56 4.27 -62.56 -0.27 0.30 16 10 H 0.12 1.52 6.91 -51.93 -0.36 1.16 16 11 C -0.11 -1.03 6.43 -24.24 -0.16 -1.19 16 12 C -0.11 -0.90 6.44 -24.24 -0.16 -1.06 16 13 C 0.04 0.36 3.96 -62.56 -0.25 0.11 16 14 H 0.12 0.95 7.02 -51.93 -0.36 0.59 16 15 C 0.12 1.33 2.45 -65.44 -0.16 1.17 16 16 H 0.10 1.23 7.62 -51.93 -0.40 0.83 16 17 N -0.74 -9.30 3.64 -51.40 -0.19 -9.49 16 18 C 0.53 9.33 7.75 -10.98 -0.09 9.25 16 19 O -0.51 -11.08 15.68 5.55 0.09 -10.99 16 20 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 21 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 22 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 23 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 24 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 25 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 26 Si 0.92 20.87 29.55 -169.99 -5.02 15.85 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 30 C -0.16 -1.97 5.34 -24.23 -0.13 -2.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 2.60 8.25 -40.82 -0.34 2.27 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.40 7.56 -51.93 -0.39 0.00 16 37 H 0.07 0.46 5.33 -51.93 -0.28 0.18 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.60 7.82 -51.93 -0.41 0.20 16 40 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 4.00 4.67 -40.82 -0.19 3.81 16 43 H 0.09 1.51 8.14 -51.91 -0.42 1.08 16 44 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 47 H 0.07 0.98 7.06 -51.93 -0.37 0.61 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -35.65 377.46 -9.26 -44.91 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.01 Total: 5.42 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.03 Total: -2.40 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.84 Total: -47.09 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.65 -9.26 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110300653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.893 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds