Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99854 * 2 1 4 4 O 1.21277 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00035 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47255 * 300.00337 * 5 3 2 7 7 C 1.53011 * 109.46880 * 59.99676 * 5 3 2 8 8 N 1.46896 * 109.47351 * 179.97438 * 5 3 2 9 9 C 1.50652 * 110.99905 * 69.63927 * 8 5 3 10 10 H 1.09003 * 115.87905 * 296.65538 * 9 8 5 11 11 C 1.55842 * 101.02949 * 170.23966 * 9 8 5 12 12 C 1.54845 * 103.51934 * 327.00548 * 11 9 8 13 13 C 1.50645 * 111.00164 * 177.73393 * 8 5 3 14 14 H 1.08998 * 115.88175 * 63.34860 * 13 8 5 15 15 C 1.55853 * 101.02932 * 297.65332 * 13 8 5 16 16 H 1.08999 * 110.61512 * 208.49942 * 15 13 8 17 17 N 1.46496 * 110.61123 * 85.51244 * 15 13 8 18 18 C 1.34779 * 120.00229 * 167.81945 * 17 15 13 19 19 O 1.21285 * 119.99449 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00370 * 179.97438 * 18 17 15 21 21 S 1.81001 * 109.47191 * 180.02562 * 20 18 17 22 22 C 1.76195 * 99.99888 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.38800 * 119.99773 * 180.02562 * 22 21 20 25 25 N 1.31630 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00014 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47143 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47482 * 119.99520 * 26 24 22 29 29 H 1.48502 * 109.47312 * 240.00218 * 26 24 22 30 30 C 1.54843 * 103.51758 * 327.00986 * 15 13 8 31 31 H 1.09005 * 109.47110 * 60.00569 * 1 2 3 32 32 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47237 * 300.00168 * 1 2 3 34 34 H 0.96995 * 119.99870 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.46765 * 59.99745 * 7 5 3 36 36 H 1.09003 * 109.46940 * 300.00049 * 7 5 3 37 37 H 1.09000 * 109.46693 * 179.97438 * 7 5 3 38 38 H 1.08999 * 110.61461 * 85.51743 * 11 9 8 39 39 H 1.09004 * 110.61547 * 208.50540 * 11 9 8 40 40 H 1.08992 * 110.61617 * 241.48985 * 12 11 9 41 41 H 1.08998 * 110.74235 * 118.56944 * 12 11 9 42 42 H 0.97004 * 120.00630 * 347.82182 * 17 15 13 43 43 H 1.09002 * 109.46972 * 300.00359 * 20 18 17 44 44 H 1.09001 * 109.46716 * 60.00350 * 20 18 17 45 45 H 0.97002 * 119.99939 * 180.02562 * 25 24 22 46 46 H 1.08995 * 110.60786 * 241.48880 * 30 15 13 47 47 H 1.08998 * 110.61600 * 118.50108 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 1 4.0088 0.6536 0.8907 7 6 4.1563 0.4456 -1.2484 8 7 4.1355 2.5522 -0.0002 9 6 3.8536 3.2252 1.3179 10 1 2.8012 3.3425 1.5767 11 6 4.6735 4.5413 1.1620 12 6 5.8886 4.1113 0.3040 13 6 5.6403 2.5928 0.0560 14 1 6.1603 2.1538 -0.7955 15 6 5.9059 1.9099 1.4316 16 1 6.8341 2.2771 1.8695 17 7 5.9441 0.4528 1.2852 18 6 6.4007 -0.3142 2.2950 19 8 6.7795 0.2019 3.3250 20 6 6.4394 -1.8132 2.1446 21 16 7.0964 -2.5548 3.6594 22 6 7.0328 -4.2594 3.2180 23 1 6.6629 -4.5523 2.2465 24 6 7.4579 -5.2258 4.1190 25 7 7.9092 -4.8689 5.3029 26 14 7.3898 -7.0331 3.6515 27 1 6.8476 -7.1684 2.2756 28 1 8.7574 -7.6096 3.7028 29 1 6.5108 -7.7580 4.6039 30 6 4.6908 2.3399 2.2897 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.9499 -0.8400 0.0004 35 1 3.7932 0.9592 -2.1386 36 1 3.7930 -0.5821 -1.2482 37 1 5.2463 0.4460 -1.2481 38 1 4.0869 5.2998 0.6437 39 1 5.0012 4.9068 2.1353 40 1 6.8185 4.2637 0.8518 41 1 5.9070 4.6562 -0.6398 42 1 5.6408 0.0399 0.4615 43 1 5.4311 -2.1866 1.9654 44 1 7.0796 -2.0775 1.3029 45 1 8.2066 -5.5443 5.9324 46 1 5.0168 2.9201 3.1528 47 1 4.1170 1.4689 2.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110300653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -58.539392 kcal Electronic energy + Delta-G solvation = -28859.896913 eV Core-core repulsion = 24975.890061 eV Total energy + Delta-G solvation = -3884.006852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.78161 -40.50586 -39.91830 -35.79204 -35.41579 -34.62188 -34.56340 -31.59917 -30.91633 -29.83747 -28.80603 -27.78353 -27.62105 -24.75011 -23.39722 -21.89374 -21.84935 -20.74895 -20.66995 -19.74678 -18.37048 -18.06106 -17.63883 -17.53819 -16.87332 -16.74343 -16.32399 -16.25116 -15.95299 -15.65187 -15.21117 -14.91181 -14.72805 -14.52537 -14.21724 -13.85054 -13.79386 -13.52727 -13.45780 -13.16101 -13.14688 -13.11307 -13.01582 -12.90330 -12.60164 -12.54265 -12.45462 -12.31280 -12.02477 -11.76457 -11.70917 -11.37248 -11.15407 -10.86268 -10.81862 -10.25789 -10.20445 -10.14203 -9.60650 -8.65962 -8.34170 -6.11909 1.26678 1.42124 1.47541 1.54479 1.57950 1.62309 2.11509 2.18394 2.27839 2.77397 3.00681 3.30255 3.48427 3.54949 3.63407 3.75505 3.90804 3.96059 4.00242 4.11748 4.17620 4.24447 4.31510 4.38921 4.45903 4.46451 4.48702 4.55172 4.59441 4.64045 4.72111 4.79989 4.90925 4.91779 5.03341 5.09431 5.17568 5.22639 5.28272 5.42275 5.42985 5.43459 5.60262 5.82279 6.20776 6.37962 6.52175 7.07767 7.17773 7.23563 8.75117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003112 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.265577 B = 8994.120931 C =10380.669061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.728 5.728 3 C 0.515 3.485 4 O -0.565 6.565 5 C 0.020 3.980 6 H 0.089 0.911 7 C -0.150 4.150 8 N -0.471 5.471 9 C 0.052 3.948 10 H 0.102 0.898 11 C -0.112 4.112 12 C -0.106 4.106 13 C 0.050 3.950 14 H 0.145 0.855 15 C 0.114 3.886 16 H 0.085 0.915 17 N -0.711 5.711 18 C 0.532 3.468 19 O -0.557 6.557 20 C -0.131 4.131 21 S -0.151 6.151 22 C -0.544 4.544 23 H 0.085 0.915 24 C 0.014 3.986 25 N -0.912 5.912 26 Si 0.997 3.003 27 H -0.254 1.254 28 H -0.276 1.276 29 H -0.276 1.276 30 C -0.160 4.160 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.412 0.588 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.270 0.730 46 H 0.075 0.925 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 12.709 -17.499 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.381 5.381 3 C 0.301 3.699 4 O -0.443 6.443 5 C -0.093 4.093 6 H 0.106 0.894 7 C -0.207 4.207 8 N -0.194 5.194 9 C -0.056 4.056 10 H 0.120 0.880 11 C -0.150 4.150 12 C -0.144 4.144 13 C -0.058 4.058 14 H 0.162 0.838 15 C 0.008 3.992 16 H 0.103 0.897 17 N -0.369 5.369 18 C 0.318 3.682 19 O -0.434 6.434 20 C -0.282 4.282 21 S 0.076 5.924 22 C -0.691 4.691 23 H 0.104 0.896 24 C -0.191 4.191 25 N -0.549 5.549 26 Si 0.819 3.181 27 H -0.177 1.177 28 H -0.202 1.202 29 H -0.201 1.201 30 C -0.200 4.200 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.285 14.526 -16.195 24.064 hybrid contribution -0.141 -2.638 -0.186 2.649 sum -10.426 11.887 -16.381 22.767 Atomic orbital electron populations 1.21631 0.78832 1.04046 1.01309 1.45796 1.08403 1.08686 1.75196 1.20772 0.90281 0.83717 0.75082 1.90659 1.70883 1.32593 1.50193 1.22316 0.91659 0.93090 1.02238 0.89420 1.21975 1.02467 1.00765 0.95514 1.67675 1.07946 1.12123 1.31705 1.24432 0.98678 0.95231 0.87261 0.88028 1.22600 0.96206 0.95602 1.00575 1.22553 0.98079 0.92467 1.01284 1.24946 0.88613 0.97578 0.94693 0.83778 1.22885 0.98830 0.79321 0.98180 0.89697 1.46332 1.65736 1.06654 1.18169 1.20188 0.76013 0.88597 0.83376 1.90704 1.47693 1.75181 1.29858 1.23398 1.06416 0.94115 1.04308 1.85653 1.83757 1.04169 1.18780 1.23242 1.49775 0.91432 1.04693 0.89641 1.26109 0.93822 1.04947 0.94233 1.70191 1.41140 1.35996 1.07556 0.84926 0.78124 0.76043 0.78992 1.17718 1.20160 1.20136 1.23710 0.96665 1.00036 0.99588 0.92755 0.87478 0.93680 0.74941 0.90776 0.89138 0.89984 0.90672 0.90535 0.89868 0.89034 0.74738 0.87016 0.86945 0.92079 0.90628 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.70 127.77 1.37 2.57 16 2 N -0.73 -11.55 5.61 -484.52 -2.72 -14.27 16 3 C 0.52 11.32 6.95 87.66 0.61 11.93 16 4 O -0.57 -16.84 14.84 -3.02 -0.04 -16.89 16 5 C 0.02 0.35 1.67 44.17 0.07 0.43 16 6 H 0.09 1.74 3.62 -2.39 -0.01 1.74 16 7 C -0.15 -1.72 8.12 71.99 0.58 -1.13 16 8 N -0.47 -9.15 5.07 -784.01 -3.97 -13.12 16 9 C 0.05 1.14 4.27 46.15 0.20 1.34 16 10 H 0.10 2.66 6.91 -2.39 -0.02 2.65 16 11 C -0.11 -1.92 6.43 32.21 0.21 -1.71 16 12 C -0.11 -1.50 6.44 32.21 0.21 -1.29 16 13 C 0.05 0.80 3.96 46.15 0.18 0.98 16 14 H 0.14 1.67 7.02 -2.39 -0.02 1.65 16 15 C 0.11 2.50 2.45 46.61 0.11 2.61 16 16 H 0.08 2.12 7.62 -2.39 -0.02 2.10 16 17 N -0.71 -16.59 3.64 -434.92 -1.58 -18.17 16 18 C 0.53 18.35 7.75 87.66 0.68 19.03 16 19 O -0.56 -24.67 15.68 -3.05 -0.05 -24.71 16 20 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 21 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 22 C -0.54 -29.84 9.50 67.95 0.65 -29.19 16 23 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 24 C 0.01 0.75 5.49 84.86 0.47 1.22 16 25 N -0.91 -54.98 13.22 21.65 0.29 -54.69 16 26 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 27 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 28 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 30 C -0.16 -3.89 5.34 32.21 0.17 -3.72 16 31 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.41 4.36 8.25 -92.71 -0.76 3.60 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.67 7.56 -2.39 -0.02 0.65 16 37 H 0.08 0.74 5.33 -2.39 -0.01 0.72 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.23 7.82 -2.39 -0.02 1.21 16 40 H 0.08 1.07 7.82 -2.39 -0.02 1.05 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.41 7.03 4.67 -92.71 -0.43 6.60 16 43 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.08 1.92 7.82 -2.39 -0.02 1.90 16 47 H 0.05 1.40 7.06 -2.39 -0.02 1.38 16 Total: -1.00 -80.66 377.46 -1.46 -82.12 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.19 Total: 26.04 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.94 Total: -1.31 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -7.98 Total: -100.25 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.09 Total: -41.60 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -80.66 -1.46 -82.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110300653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.578 kcal (2) G-P(sol) polarization free energy of solvation -80.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds