Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81392 * 103.00299 * 2 1 4 4 H 1.08996 * 109.47315 * 305.00144 * 3 2 1 5 5 C 1.53001 * 109.47152 * 65.00007 * 3 2 1 6 6 C 1.50696 * 109.47383 * 184.99655 * 3 2 1 7 7 O 1.21286 * 119.99983 * 340.00991 * 6 3 2 8 8 N 1.34779 * 120.00220 * 159.99947 * 6 3 2 9 9 C 1.46505 * 120.00122 * 180.02562 * 8 6 3 10 10 H 1.09002 * 110.54346 * 40.44197 * 9 8 6 11 11 C 1.54831 * 110.61101 * 277.40568 * 9 8 6 12 12 C 1.55844 * 103.51909 * 241.49375 * 11 9 8 13 13 H 1.08999 * 115.57864 * 159.64662 * 12 11 9 14 14 C 1.55852 * 105.02980 * 288.27152 * 12 11 9 15 15 C 1.56668 * 103.67443 * 71.49865 * 14 12 11 16 16 C 1.55844 * 102.66912 * 0.33523 * 15 14 12 17 17 H 1.08999 * 115.58149 * 159.16643 * 16 15 14 18 18 N 1.50642 * 101.02961 * 32.99261 * 12 11 9 19 19 C 1.46906 * 110.36098 * 62.12837 * 18 12 11 20 20 C 1.50703 * 109.46888 * 69.36862 * 19 18 12 21 21 O 1.21295 * 120.00002 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99760 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99992 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00145 * 359.97438 * 23 22 20 25 25 C 1.38956 * 120.00038 * 180.02562 * 23 22 20 26 26 N 1.31404 * 120.00178 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99903 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47306 * 89.99595 * 27 25 23 29 29 H 1.48496 * 109.47127 * 209.99871 * 27 25 23 30 30 H 1.48500 * 109.46976 * 329.99407 * 27 25 23 31 31 H 1.09001 * 109.47079 * 59.99444 * 1 2 3 32 32 H 1.08994 * 109.47726 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46957 * 300.00228 * 1 2 3 34 34 H 1.09005 * 109.47069 * 60.00120 * 5 3 2 35 35 H 1.08999 * 109.47299 * 179.97438 * 5 3 2 36 36 H 1.09007 * 109.47146 * 300.00139 * 5 3 2 37 37 H 0.96998 * 120.00004 * 0.02562 * 8 6 3 38 38 H 1.09005 * 110.61541 * 0.02562 * 11 9 8 39 39 H 1.09001 * 110.61054 * 122.82391 * 11 9 8 40 40 H 1.09007 * 110.60944 * 190.24021 * 14 12 11 41 41 H 1.09000 * 110.61397 * 313.21666 * 14 12 11 42 42 H 1.09005 * 110.78187 * 242.22137 * 15 14 12 43 43 H 1.09000 * 111.25635 * 118.67276 * 15 14 12 44 44 H 1.09005 * 109.47222 * 189.36413 * 19 18 12 45 45 H 1.08993 * 109.47367 * 309.36570 * 19 18 12 46 46 H 0.97003 * 119.99877 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00495 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 3.7142 1.9385 -0.1237 7 8 4.4552 1.0197 0.1555 8 7 4.2254 3.1123 -0.5449 9 6 5.6760 3.2784 -0.6658 10 1 6.1308 2.3787 -1.0804 11 6 6.3010 3.6261 0.7074 12 6 6.9339 5.0310 0.4744 13 1 7.1247 5.6163 1.3739 14 6 8.1729 4.7705 -0.4344 15 6 7.5442 4.4122 -1.8240 16 6 6.0147 4.5197 -1.5450 17 1 5.3848 4.6602 -2.4234 18 7 5.9672 5.6214 -0.5187 19 6 4.6278 5.7307 0.0747 20 6 4.6372 6.7928 1.1439 21 8 5.6593 7.3987 1.3878 22 7 3.5100 7.0693 1.8289 23 6 3.5186 8.0351 2.8019 24 1 4.4288 8.5740 3.0197 25 6 2.3565 8.3198 3.5085 26 7 1.2492 7.6637 3.2439 27 14 2.3682 9.6363 4.8338 28 1 2.0270 10.9494 4.2301 29 1 1.3682 9.2966 5.8778 30 1 3.7186 9.7093 5.4471 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2355 1.9149 2.1492 35 1 1.9885 3.4635 1.3076 36 1 0.6636 2.2778 1.3969 37 1 3.6329 3.8471 -0.7681 38 1 5.5316 3.6744 1.4781 39 1 7.0660 2.8977 0.9763 40 1 8.7892 5.6665 -0.5091 41 1 8.7573 3.9320 -0.0554 42 1 7.8101 3.3969 -2.1186 43 1 7.8457 5.1265 -2.5901 44 1 3.9085 6.0002 -0.6987 45 1 4.3464 4.7743 0.5151 46 1 2.6927 6.5844 1.6340 47 1 0.4379 7.8627 3.7369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110313413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = -31.867192 kcal Electronic energy + Delta-G solvation = -29086.356912 eV Core-core repulsion = 25203.506654 eV Total energy + Delta-G solvation = -3882.850258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41121 -39.28828 -37.85412 -34.47725 -33.99329 -33.29852 -31.94431 -31.16852 -29.66676 -29.11421 -28.53937 -26.52855 -24.84291 -24.15550 -22.26248 -20.78376 -20.33879 -19.89884 -18.85722 -17.88038 -17.56034 -17.03986 -16.29359 -15.95412 -15.61058 -15.14817 -15.07221 -14.67198 -14.48273 -14.25517 -13.95732 -13.84717 -13.75055 -13.45135 -13.05523 -12.89426 -12.65854 -12.35518 -12.16481 -12.04178 -11.98707 -11.87221 -11.83100 -11.51727 -11.42926 -11.33494 -11.14110 -10.96109 -10.61652 -10.43251 -10.35679 -10.26329 -10.03895 -9.85247 -9.54594 -9.15918 -8.59665 -8.14619 -8.00568 -7.83961 -6.46942 -3.87234 1.27458 2.29654 2.50160 3.00615 3.14356 3.23497 3.28989 3.80145 3.87929 4.15869 4.39428 4.56325 4.63524 4.64639 4.70010 4.78575 4.90470 4.93609 5.01004 5.11852 5.17673 5.24197 5.29636 5.34995 5.40910 5.47643 5.51062 5.53477 5.57584 5.67306 5.71282 5.82216 5.96264 5.98477 6.04327 6.13951 6.20414 6.22050 6.39218 6.47688 6.80346 7.11858 7.26681 7.50666 8.00891 8.03122 8.56259 9.13603 9.48605 10.00572 10.70846 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008180 B = 0.004314 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.310985 B = 6489.530882 C = 9445.806681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.192 6.192 3 C -0.093 4.093 4 H 0.107 0.893 5 C -0.145 4.145 6 C 0.535 3.465 7 O -0.518 6.518 8 N -0.719 5.719 9 C 0.115 3.885 10 H 0.095 0.905 11 C -0.164 4.164 12 C 0.058 3.942 13 H 0.129 0.871 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.033 3.967 17 H 0.116 0.884 18 N -0.459 5.459 19 C 0.002 3.998 20 C 0.447 3.553 21 O -0.577 6.577 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.024 3.976 26 N -0.903 5.903 27 Si 0.928 3.072 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.390 0.610 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -12.706 -10.169 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.034 5.966 3 C -0.225 4.225 4 H 0.125 0.875 5 C -0.204 4.204 6 C 0.319 3.681 7 O -0.392 6.392 8 N -0.374 5.374 9 C 0.009 3.991 10 H 0.113 0.887 11 C -0.204 4.204 12 C -0.050 4.050 13 H 0.147 0.853 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.076 4.076 17 H 0.134 0.866 18 N -0.181 5.181 19 C -0.130 4.130 20 C 0.232 3.768 21 O -0.460 6.460 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.178 4.178 26 N -0.544 5.544 27 Si 0.755 3.245 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.241 0.759 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.223 0.777 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.336 -13.205 -9.935 16.690 hybrid contribution -2.319 0.997 0.774 2.640 sum 0.017 -12.208 -9.161 15.263 Atomic orbital electron populations 1.23552 0.95551 1.06562 1.05148 1.87317 1.05046 1.06364 1.97899 1.23366 0.97063 0.98267 1.03828 0.87482 1.22021 1.02158 1.01780 0.94442 1.19707 0.88810 0.82644 0.76946 1.90734 1.60441 1.40062 1.48010 1.46414 1.08208 1.14540 1.68235 1.22905 0.79455 1.00012 0.96713 0.88705 1.23775 1.01181 0.98699 0.96741 1.24532 0.92376 0.91601 0.96499 0.85298 1.22945 0.96863 1.01278 0.94389 1.22821 0.92623 1.01247 0.97986 1.24820 0.98298 0.88346 0.96151 0.86630 1.67648 1.05457 1.36532 1.08506 1.22553 0.92634 0.99665 0.98160 1.19636 0.84985 0.86948 0.85238 1.90514 1.32299 1.53878 1.69355 1.41826 1.09984 1.35098 1.33187 1.19687 0.97650 1.13714 1.11702 0.87953 1.25222 0.94824 0.98695 0.99038 1.69589 1.00699 1.41747 1.42379 0.85882 0.78216 0.80371 0.79997 1.20395 1.20946 1.19422 0.90527 0.87890 0.90139 0.90569 0.90431 0.91023 0.75946 0.90872 0.90384 0.90804 0.91487 0.91207 0.90500 0.89785 0.91054 0.77747 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.45 101.05 1.06 -0.04 16 2 S -0.19 -2.26 21.04 -107.50 -2.26 -4.52 16 3 C -0.09 -1.03 3.18 -27.88 -0.09 -1.12 16 4 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.14 -1.60 9.08 37.16 0.34 -1.26 16 6 C 0.53 7.13 6.97 -10.99 -0.08 7.06 16 7 O -0.52 -8.74 15.83 5.55 0.09 -8.65 16 8 N -0.72 -8.42 3.75 -51.40 -0.19 -8.62 16 9 C 0.12 1.41 2.47 -65.44 -0.16 1.24 16 10 H 0.09 1.19 7.45 -51.93 -0.39 0.81 16 11 C -0.16 -2.31 5.45 -24.25 -0.13 -2.44 16 12 C 0.06 0.89 4.21 -62.56 -0.26 0.63 16 13 H 0.13 2.39 6.90 -51.93 -0.36 2.03 16 14 C -0.12 -1.42 6.48 -23.23 -0.15 -1.57 16 15 C -0.11 -1.14 6.58 -23.23 -0.15 -1.29 16 16 C 0.03 0.39 4.59 -62.56 -0.29 0.10 16 17 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 18 N -0.46 -7.13 5.36 -207.01 -1.11 -8.24 16 19 C 0.00 0.03 4.01 -4.97 -0.02 0.01 16 20 C 0.45 10.06 7.57 -10.98 -0.08 9.98 16 21 O -0.58 -15.06 14.38 5.54 0.08 -14.98 16 22 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 23 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 24 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 25 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 27 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 31 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.59 7.14 -51.93 -0.37 0.22 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 37 H 0.40 4.14 6.46 -40.82 -0.26 3.88 16 38 H 0.07 1.18 7.03 -51.93 -0.36 0.82 16 39 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 42 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.22 7.99 -51.93 -0.42 0.81 16 45 H 0.07 1.08 3.49 -51.93 -0.18 0.90 16 46 H 0.39 8.88 7.90 -40.82 -0.32 8.55 16 47 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -32.40 381.14 -9.41 -41.81 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -7.13 Total: 14.75 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.26 Total: 3.63 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.64 Total: -53.40 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.17 Total: -23.63 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.26 Total: -4.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.40 -9.41 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110313413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.942 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds