Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81392 * 103.00299 * 2 1 4 4 H 1.08996 * 109.47315 * 305.00144 * 3 2 1 5 5 C 1.53001 * 109.47152 * 65.00007 * 3 2 1 6 6 C 1.50696 * 109.47383 * 184.99655 * 3 2 1 7 7 O 1.21286 * 119.99983 * 340.00991 * 6 3 2 8 8 N 1.34779 * 120.00220 * 159.99947 * 6 3 2 9 9 C 1.46505 * 120.00122 * 180.02562 * 8 6 3 10 10 H 1.09002 * 110.54346 * 40.44197 * 9 8 6 11 11 C 1.54831 * 110.61101 * 277.40568 * 9 8 6 12 12 C 1.55844 * 103.51909 * 241.49375 * 11 9 8 13 13 H 1.08999 * 115.57864 * 159.64662 * 12 11 9 14 14 C 1.55852 * 105.02980 * 288.27152 * 12 11 9 15 15 C 1.56668 * 103.67443 * 71.49865 * 14 12 11 16 16 C 1.55844 * 102.66912 * 0.33523 * 15 14 12 17 17 H 1.08999 * 115.58149 * 159.16643 * 16 15 14 18 18 N 1.50642 * 101.02961 * 32.99261 * 12 11 9 19 19 C 1.46906 * 110.36098 * 62.12837 * 18 12 11 20 20 C 1.50703 * 109.46888 * 69.36862 * 19 18 12 21 21 O 1.21295 * 120.00002 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99760 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99992 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00145 * 359.97438 * 23 22 20 25 25 C 1.38956 * 120.00038 * 180.02562 * 23 22 20 26 26 N 1.31404 * 120.00178 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99903 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47306 * 89.99595 * 27 25 23 29 29 H 1.48496 * 109.47127 * 209.99871 * 27 25 23 30 30 H 1.48500 * 109.46976 * 329.99407 * 27 25 23 31 31 H 1.09001 * 109.47079 * 59.99444 * 1 2 3 32 32 H 1.08994 * 109.47726 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46957 * 300.00228 * 1 2 3 34 34 H 1.09005 * 109.47069 * 60.00120 * 5 3 2 35 35 H 1.08999 * 109.47299 * 179.97438 * 5 3 2 36 36 H 1.09007 * 109.47146 * 300.00139 * 5 3 2 37 37 H 0.96998 * 120.00004 * 0.02562 * 8 6 3 38 38 H 1.09005 * 110.61541 * 0.02562 * 11 9 8 39 39 H 1.09001 * 110.61054 * 122.82391 * 11 9 8 40 40 H 1.09007 * 110.60944 * 190.24021 * 14 12 11 41 41 H 1.09000 * 110.61397 * 313.21666 * 14 12 11 42 42 H 1.09005 * 110.78187 * 242.22137 * 15 14 12 43 43 H 1.09000 * 111.25635 * 118.67276 * 15 14 12 44 44 H 1.09005 * 109.47222 * 189.36413 * 19 18 12 45 45 H 1.08993 * 109.47367 * 309.36570 * 19 18 12 46 46 H 0.97003 * 119.99877 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00495 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 3.7142 1.9385 -0.1237 7 8 4.4552 1.0197 0.1555 8 7 4.2254 3.1123 -0.5449 9 6 5.6760 3.2784 -0.6658 10 1 6.1308 2.3787 -1.0804 11 6 6.3010 3.6261 0.7074 12 6 6.9339 5.0310 0.4744 13 1 7.1247 5.6163 1.3739 14 6 8.1729 4.7705 -0.4344 15 6 7.5442 4.4122 -1.8240 16 6 6.0147 4.5197 -1.5450 17 1 5.3848 4.6602 -2.4234 18 7 5.9672 5.6214 -0.5187 19 6 4.6278 5.7307 0.0747 20 6 4.6372 6.7928 1.1439 21 8 5.6593 7.3987 1.3878 22 7 3.5100 7.0693 1.8289 23 6 3.5186 8.0351 2.8019 24 1 4.4288 8.5740 3.0197 25 6 2.3565 8.3198 3.5085 26 7 1.2492 7.6637 3.2439 27 14 2.3682 9.6363 4.8338 28 1 2.0270 10.9494 4.2301 29 1 1.3682 9.2966 5.8778 30 1 3.7186 9.7093 5.4471 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2355 1.9149 2.1492 35 1 1.9885 3.4635 1.3076 36 1 0.6636 2.2778 1.3969 37 1 3.6329 3.8471 -0.7681 38 1 5.5316 3.6744 1.4781 39 1 7.0660 2.8977 0.9763 40 1 8.7892 5.6665 -0.5091 41 1 8.7573 3.9320 -0.0554 42 1 7.8101 3.3969 -2.1186 43 1 7.8457 5.1265 -2.5901 44 1 3.9085 6.0002 -0.6987 45 1 4.3464 4.7743 0.5151 46 1 2.6927 6.5844 1.6340 47 1 0.4379 7.8627 3.7369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110313413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -55.512260 kcal Electronic energy + Delta-G solvation = -29087.382239 eV Core-core repulsion = 25203.506654 eV Total energy + Delta-G solvation = -3883.875585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53105 -40.42467 -39.62553 -35.97146 -35.52154 -34.21321 -33.43611 -32.91330 -30.73561 -29.87792 -29.43613 -28.09214 -26.05441 -25.62045 -23.23612 -21.84989 -21.76052 -20.92726 -20.46302 -19.73379 -18.58916 -18.06435 -17.57928 -17.18687 -16.90976 -16.52034 -16.25201 -16.16548 -15.76307 -15.51280 -15.26424 -15.04453 -14.73617 -14.38821 -14.38553 -13.93503 -13.71770 -13.55501 -13.42866 -13.28181 -13.10614 -13.02386 -12.93780 -12.84260 -12.73432 -12.55143 -12.41290 -12.34968 -12.13996 -12.03589 -11.73011 -11.47529 -11.36963 -10.90639 -10.84422 -10.32064 -10.21836 -9.99157 -9.49330 -8.72368 -8.46525 -5.93785 0.45073 1.36489 1.41102 1.41987 1.52452 1.61209 2.03790 2.06903 2.27728 2.70064 3.19863 3.24826 3.45375 3.63490 3.65893 3.72115 3.80469 3.94530 4.05489 4.12452 4.18809 4.27861 4.34588 4.37847 4.39829 4.46676 4.49738 4.53568 4.55468 4.62602 4.69869 4.74210 4.91333 4.91912 5.04849 5.09926 5.14413 5.25242 5.31117 5.39212 5.41574 5.69442 5.84353 6.06886 6.29331 6.61568 7.03145 7.14328 7.57193 8.13965 8.70597 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008180 B = 0.004314 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.310985 B = 6489.530882 C = 9445.806681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.081 4.081 4 H 0.137 0.863 5 C -0.142 4.142 6 C 0.532 3.468 7 O -0.556 6.556 8 N -0.710 5.710 9 C 0.122 3.878 10 H 0.101 0.899 11 C -0.157 4.157 12 C 0.047 3.953 13 H 0.085 0.915 14 C -0.112 4.112 15 C -0.101 4.101 16 C 0.045 3.955 17 H 0.144 0.856 18 N -0.480 5.480 19 C 0.017 3.983 20 C 0.442 3.558 21 O -0.618 6.618 22 N -0.572 5.572 23 C -0.332 4.332 24 H 0.075 0.925 25 C -0.007 4.007 26 N -0.916 5.916 27 Si 0.986 3.014 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.276 1.276 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.412 0.588 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -13.289 -12.037 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.029 6.029 3 C -0.212 4.212 4 H 0.155 0.845 5 C -0.201 4.201 6 C 0.317 3.683 7 O -0.434 6.434 8 N -0.365 5.365 9 C 0.016 3.984 10 H 0.119 0.881 11 C -0.197 4.197 12 C -0.061 4.061 13 H 0.103 0.897 14 C -0.150 4.150 15 C -0.139 4.139 16 C -0.064 4.064 17 H 0.162 0.838 18 N -0.203 5.203 19 C -0.115 4.115 20 C 0.230 3.770 21 O -0.504 6.504 22 N -0.209 5.209 23 C -0.462 4.462 24 H 0.093 0.907 25 C -0.208 4.208 26 N -0.557 5.557 27 Si 0.810 3.190 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.202 1.202 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.002 -13.785 -11.827 18.191 hybrid contribution -1.890 1.167 1.381 2.615 sum -0.887 -12.618 -10.447 16.405 Atomic orbital electron populations 1.23596 0.91557 1.07743 1.06251 1.87543 1.09515 1.07782 1.98048 1.23307 0.95506 0.97694 1.04726 0.84537 1.21991 1.03168 1.01075 0.93833 1.20124 0.89728 0.82337 0.76066 1.90716 1.61569 1.41418 1.49699 1.46339 1.08207 1.14426 1.67503 1.22840 0.79629 1.00540 0.95401 0.88140 1.23680 1.00585 0.98150 0.97312 1.24357 0.94431 0.91490 0.95863 0.89705 1.22919 0.95513 1.01599 0.95003 1.22865 0.91201 1.03032 0.96786 1.24999 0.99852 0.85991 0.95567 0.83836 1.67642 1.04565 1.38791 1.09266 1.22435 0.94346 0.97749 0.96988 1.20724 0.83701 0.87156 0.85460 1.90489 1.33648 1.55589 1.70626 1.41855 1.10809 1.35012 1.33238 1.19590 0.97304 1.15390 1.13868 0.90723 1.25895 0.94219 1.00248 1.00389 1.69633 1.00945 1.42226 1.42851 0.85033 0.77967 0.78217 0.77788 1.19656 1.19568 1.20150 0.88864 0.86697 0.89497 0.92625 0.90898 0.89129 0.74878 0.93669 0.89904 0.91645 0.89937 0.88730 0.89407 0.86939 0.89743 0.77050 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 10.45 113.37 1.19 -0.43 16 2 S -0.25 -5.70 21.04 -56.49 -1.19 -6.89 16 3 C -0.08 -1.65 3.18 29.85 0.09 -1.55 16 4 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 5 C -0.14 -2.97 9.08 71.98 0.65 -2.32 16 6 C 0.53 13.58 6.97 87.66 0.61 14.19 16 7 O -0.56 -18.63 15.83 -3.05 -0.05 -18.68 16 8 N -0.71 -15.28 3.75 -434.93 -1.63 -16.91 16 9 C 0.12 2.75 2.47 46.60 0.12 2.86 16 10 H 0.10 2.26 7.45 -2.39 -0.02 2.24 16 11 C -0.16 -4.42 5.45 32.20 0.18 -4.25 16 12 C 0.05 1.47 4.21 46.15 0.19 1.67 16 13 H 0.08 3.39 6.90 -2.39 -0.02 3.38 16 14 C -0.11 -2.61 6.48 32.86 0.21 -2.39 16 15 C -0.10 -1.80 6.58 32.86 0.22 -1.58 16 16 C 0.04 0.90 4.59 46.14 0.21 1.12 16 17 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 18 N -0.48 -14.44 5.36 -808.86 -4.33 -18.77 16 19 C 0.02 0.54 4.01 85.56 0.34 0.88 16 20 C 0.44 20.44 7.57 87.66 0.66 21.10 16 21 O -0.62 -33.73 14.38 -3.08 -0.04 -33.77 16 22 N -0.57 -28.24 5.29 -306.98 -1.62 -29.86 16 23 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 24 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 25 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 26 N -0.92 -47.44 13.05 21.66 0.28 -47.16 16 27 Si 0.99 42.35 29.55 68.60 2.03 44.37 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 30 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.05 7.14 -2.39 -0.02 1.03 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.54 6.92 -2.38 -0.02 1.52 16 37 H 0.41 7.35 6.46 -92.71 -0.60 6.75 16 38 H 0.04 1.50 7.03 -2.38 -0.02 1.49 16 39 H 0.08 2.21 7.83 -2.39 -0.02 2.19 16 40 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.08 1.64 7.82 -2.39 -0.02 1.62 16 42 H 0.09 1.29 7.79 -2.38 -0.02 1.27 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 2.99 7.99 -2.38 -0.02 2.97 16 45 H 0.09 2.51 3.49 -2.39 -0.01 2.50 16 46 H 0.40 18.19 7.90 -92.71 -0.73 17.45 16 47 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -73.50 381.14 -0.93 -74.43 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.33 Total: 41.53 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.96 Total: 11.71 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -7.31 Total: -112.70 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.09 Total: -52.45 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -1.19 Total: -6.89 kcal Total: -73.50 -0.93 -74.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110313413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.916 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds