Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47098 * 2 1 4 4 C 1.50700 * 109.47383 * 120.00483 * 2 1 3 5 5 N 1.34777 * 119.99908 * 273.28163 * 4 2 1 6 6 O 1.21276 * 120.00207 * 93.28371 * 4 2 1 7 7 N 1.46904 * 109.46823 * 240.00529 * 2 1 3 8 8 C 1.48534 * 110.99996 * 174.39468 * 7 2 1 9 9 C 1.54323 * 104.67263 * 200.80550 * 8 7 2 10 10 H 1.08994 * 112.55106 * 262.01796 * 9 8 7 11 11 C 1.54159 * 108.86564 * 137.48816 * 9 8 7 12 12 C 1.54851 * 104.32233 * 223.67368 * 11 9 8 13 13 C 1.54842 * 102.73389 * 38.18635 * 12 11 9 14 14 C 1.54165 * 104.32563 * 321.81449 * 13 12 11 15 15 N 1.46501 * 112.51286 * 260.86181 * 14 13 12 16 16 C 1.34773 * 119.99761 * 298.12407 * 15 14 13 17 17 O 1.21279 * 120.00138 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00097 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47454 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00014 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00094 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00035 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47514 * 120.00147 * 24 22 20 27 27 H 1.48502 * 109.47002 * 240.00333 * 24 22 20 28 28 C 1.48530 * 111.00047 * 58.98510 * 7 2 1 29 29 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46844 * 299.99712 * 1 2 3 31 31 H 1.08996 * 109.47449 * 59.99291 * 1 2 3 32 32 H 0.97000 * 119.99606 * 0.02562 * 5 4 2 33 33 H 0.96994 * 120.00151 * 179.97438 * 5 4 2 34 34 H 1.09004 * 110.39206 * 319.59891 * 8 7 2 35 35 H 1.08991 * 110.39880 * 82.00167 * 8 7 2 36 36 H 1.08997 * 110.46368 * 342.38442 * 11 9 8 37 37 H 1.09000 * 110.46217 * 104.96651 * 11 9 8 38 38 H 1.08997 * 110.75747 * 156.49327 * 12 11 9 39 39 H 1.08996 * 110.75836 * 279.69016 * 12 11 9 40 40 H 1.09003 * 110.46263 * 203.10545 * 13 12 11 41 41 H 1.09000 * 110.46514 * 80.52683 * 13 12 11 42 42 H 0.96999 * 119.99663 * 118.12426 * 15 14 13 43 43 H 1.08994 * 109.47199 * 300.00406 * 18 16 15 44 44 H 1.09000 * 109.46888 * 59.99858 * 18 16 15 45 45 H 0.96995 * 119.99978 * 179.97438 * 23 22 20 46 46 H 1.08994 * 110.39800 * 277.98915 * 28 7 2 47 47 H 1.09003 * 110.39624 * 40.28536 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.1941 -0.0302 2.3826 6 8 2.2913 -1.8944 1.1838 7 7 2.0196 -0.6924 -1.1996 8 6 3.4982 -0.5961 -1.3036 9 6 3.8034 -0.8616 -2.7928 10 1 4.0996 -1.8935 -2.9813 11 6 4.8767 0.1379 -3.2676 12 6 4.3690 0.6175 -4.6496 13 6 2.8389 0.7188 -4.4348 14 6 2.4985 -0.4897 -3.5401 15 7 1.9651 -1.6204 -4.3038 16 6 0.8139 -1.4859 -4.9915 17 8 0.2192 -0.4290 -4.9777 18 6 0.2655 -2.6488 -5.7776 19 16 -1.2792 -2.1578 -6.5832 20 6 -1.6868 -3.6617 -7.4057 21 1 -1.0396 -4.5212 -7.3118 22 6 -2.8397 -3.7419 -8.1745 23 7 -3.6283 -2.6942 -8.2895 24 14 -3.2723 -5.3365 -9.0459 25 1 -2.2316 -6.3559 -8.7581 26 1 -4.5890 -5.8237 -8.5621 27 1 -3.3404 -5.0977 -10.5100 28 6 1.5234 -0.0331 -2.4345 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9867 0.9166 2.4199 33 1 2.5171 -0.4876 3.1746 34 1 3.8348 0.4008 -1.0187 35 1 3.9731 -1.3516 -0.6778 36 1 4.9485 0.9772 -2.5758 37 1 5.8420 -0.3584 -3.3676 38 1 4.7894 1.5918 -4.8989 39 1 4.6058 -0.1131 -5.4230 40 1 2.3146 0.6471 -5.3878 41 1 2.5860 1.6506 -3.9289 42 1 2.4406 -2.4658 -4.3145 43 1 0.9902 -2.9502 -6.5338 44 1 0.0740 -3.4844 -5.1044 45 1 -4.4337 -2.7501 -8.8270 46 1 0.5101 -0.3645 -2.6612 47 1 1.5521 1.0509 -2.3242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111600315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -99.740223 kcal Electronic energy + Delta-G solvation = -28379.163617 eV Core-core repulsion = 24493.370164 eV Total energy + Delta-G solvation = -3885.793454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.02247 -40.62968 -39.47795 -36.84792 -34.73079 -34.69016 -34.57143 -32.60755 -31.63609 -30.11588 -28.41175 -27.63433 -26.77906 -25.07806 -23.30100 -22.23770 -21.15117 -20.69220 -20.33934 -19.72365 -18.37954 -18.18835 -17.79270 -17.45562 -16.88246 -16.61560 -16.34137 -16.14990 -15.99812 -15.62253 -15.43696 -14.97183 -14.80266 -14.57835 -14.50215 -14.16168 -13.82002 -13.54979 -13.16623 -13.15666 -13.11321 -12.96423 -12.91574 -12.81996 -12.55362 -12.41513 -12.27045 -11.97701 -11.77537 -11.69673 -11.61795 -11.49391 -11.15644 -10.89577 -10.73798 -10.64682 -10.26810 -9.99777 -9.44796 -8.64464 -8.34936 -6.11633 1.27563 1.40533 1.46764 1.58452 1.59574 1.67911 2.25723 2.31364 2.37373 2.95720 2.99057 3.25420 3.34495 3.46040 3.76085 3.88960 3.97077 4.03384 4.08827 4.10611 4.27949 4.29813 4.34508 4.37452 4.43967 4.51893 4.53559 4.61980 4.71381 4.76145 4.76711 4.88121 4.95530 5.03445 5.10746 5.15732 5.22473 5.25426 5.42095 5.43603 5.62998 5.78127 5.82189 5.95421 6.20036 6.48712 6.56896 7.06694 7.30743 7.36575 8.74456 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.002759 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.352715 B =10147.296930 C =11238.609910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.093 0.907 4 C 0.522 3.478 5 N -0.835 5.835 6 O -0.572 6.572 7 N -0.509 5.509 8 C 0.042 3.958 9 C -0.087 4.087 10 H 0.098 0.902 11 C -0.107 4.107 12 C -0.118 4.118 13 C -0.124 4.124 14 C 0.172 3.828 15 N -0.697 5.697 16 C 0.539 3.461 17 O -0.551 6.551 18 C -0.132 4.132 19 S -0.141 6.141 20 C -0.547 4.547 21 H 0.079 0.921 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.272 1.272 28 C 0.041 3.959 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.417 0.583 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.412 0.588 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.271 0.729 46 H 0.060 0.940 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.249 9.447 19.645 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 H 0.110 0.890 4 C 0.306 3.694 5 N -0.401 5.401 6 O -0.450 6.450 7 N -0.234 5.234 8 C -0.085 4.085 9 C -0.107 4.107 10 H 0.116 0.884 11 C -0.145 4.145 12 C -0.155 4.155 13 C -0.163 4.163 14 C 0.085 3.915 15 N -0.350 5.350 16 C 0.324 3.676 17 O -0.428 6.428 18 C -0.283 4.283 19 S 0.086 5.914 20 C -0.695 4.695 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.197 1.197 28 C -0.087 4.087 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.241 0.759 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.248 0.752 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.047 9.976 19.479 29.013 hybrid contribution 0.129 -1.423 -0.390 1.481 sum 19.175 8.553 19.089 28.377 Atomic orbital electron populations 1.21770 0.91774 1.02501 1.03804 1.21857 0.97679 0.96978 0.89302 0.88975 1.20580 0.76317 0.86853 0.85629 1.43698 1.69306 1.15050 1.12008 1.90743 1.51323 1.17479 1.85466 1.65257 1.07291 1.50464 1.00373 1.23308 0.87746 1.01270 0.96217 1.22724 0.93068 1.01561 0.93302 0.88383 1.22471 0.97656 0.98037 0.96321 1.22503 0.93183 1.02154 0.97702 1.22686 0.97525 0.96757 0.99314 1.21541 0.93019 0.86728 0.90212 1.45709 1.23744 1.15835 1.49738 1.19880 0.80676 0.88330 0.78690 1.90664 1.59456 1.29539 1.63177 1.23388 1.02071 1.00430 1.02431 1.85435 1.23731 1.20712 1.61475 1.23237 1.12234 0.98751 1.35274 0.90294 1.26100 0.94898 1.01444 0.96641 1.70178 1.13736 1.31522 1.39228 0.84925 0.78398 0.77050 0.77698 1.18276 1.19910 1.19736 1.23420 0.99152 0.97161 0.88995 0.93643 0.88887 0.91717 0.75125 0.75946 0.91449 0.90543 0.89819 0.89367 0.89898 0.91675 0.93492 0.90268 0.75174 0.87639 0.88169 0.91983 0.92158 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.00 71.98 0.65 -2.05 16 2 C 0.05 0.96 2.24 44.17 0.10 1.06 16 3 H 0.09 1.06 7.97 -2.38 -0.02 1.04 16 4 C 0.52 9.92 6.64 87.66 0.58 10.50 16 5 N -0.84 -7.39 8.87 -173.54 -1.54 -8.93 16 6 O -0.57 -16.87 16.86 -3.02 -0.05 -16.92 16 7 N -0.51 -11.62 4.87 -861.09 -4.19 -15.82 16 8 C 0.04 0.75 5.31 86.44 0.46 1.21 16 9 C -0.09 -1.48 3.70 -9.30 -0.03 -1.52 16 10 H 0.10 1.62 7.72 -2.39 -0.02 1.60 16 11 C -0.11 -1.30 6.36 31.62 0.20 -1.10 16 12 C -0.12 -1.87 6.90 31.86 0.22 -1.65 16 13 C -0.12 -2.85 5.66 31.62 0.18 -2.67 16 14 C 0.17 4.05 0.92 5.10 0.00 4.05 16 15 N -0.70 -19.28 5.27 -416.20 -2.19 -21.47 16 16 C 0.54 20.32 6.91 87.66 0.61 20.93 16 17 O -0.55 -24.68 13.38 -3.03 -0.04 -24.72 16 18 C -0.13 -5.47 6.16 71.24 0.44 -5.04 16 19 S -0.14 -7.93 20.57 -56.49 -1.16 -9.09 16 20 C -0.55 -31.96 9.50 67.96 0.65 -31.31 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.81 5.49 84.86 0.47 1.27 16 23 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 24 Si 1.00 44.53 29.55 68.60 2.03 46.56 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.04 1.04 4.12 86.44 0.36 1.40 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.37 6.91 -2.39 -0.02 1.35 16 32 H 0.42 0.83 8.83 -92.71 -0.82 0.01 16 33 H 0.41 2.97 8.93 -92.71 -0.83 2.14 16 34 H 0.07 0.89 6.93 -2.38 -0.02 0.88 16 35 H 0.08 1.56 7.61 -2.39 -0.02 1.54 16 36 H 0.08 0.81 7.18 -2.39 -0.02 0.79 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.43 6.84 -2.39 -0.02 1.41 16 41 H 0.08 1.68 7.18 -2.39 -0.02 1.67 16 42 H 0.41 9.27 8.31 -92.71 -0.77 8.50 16 43 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 44 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.06 2.03 6.16 -2.39 -0.01 2.02 16 47 H 0.06 1.43 7.03 -2.39 -0.02 1.41 16 Total: -1.00 -83.88 383.55 -3.39 -87.27 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -1.40 Total: 24.21 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.87 Total: -4.92 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -7.64 Total: -102.39 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.09 Total: -41.64 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -83.88 -3.39 -87.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.469 kcal (2) G-P(sol) polarization free energy of solvation -83.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds