Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47549 * 2 1 4 4 C 1.46767 * 124.35329 * 270.00090 * 3 2 1 5 5 C 1.54823 * 105.49565 * 197.05648 * 4 3 2 6 6 C 1.54621 * 101.60818 * 334.56529 * 5 4 3 7 7 H 1.09001 * 110.48975 * 143.56614 * 6 5 4 8 8 N 1.46902 * 110.49122 * 266.08332 * 6 5 4 9 9 C 1.46903 * 110.99697 * 287.42288 * 8 6 5 10 10 C 1.53233 * 109.33720 * 187.25327 * 9 8 6 11 11 N 1.47079 * 108.51984 * 306.16638 * 10 9 8 12 12 C 1.34776 * 120.88224 * 231.18929 * 11 10 9 13 13 O 1.21280 * 120.00392 * 359.97438 * 12 11 10 14 14 C 1.50710 * 120.00207 * 180.02562 * 12 11 10 15 15 S 1.80996 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00049 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00003 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00065 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00029 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47096 * 89.99841 * 20 18 16 22 22 H 1.48499 * 109.46976 * 329.99586 * 20 18 16 23 23 H 1.48504 * 109.46753 * 209.99644 * 20 18 16 24 24 C 1.47082 * 118.23913 * 51.46270 * 11 10 9 25 25 C 1.46897 * 110.99735 * 51.72190 * 8 6 5 26 26 C 1.34417 * 124.34957 * 90.02378 * 3 2 1 27 27 O 1.21285 * 124.94297 * 359.53782 * 26 3 2 28 28 H 1.08999 * 109.46379 * 59.99784 * 1 2 3 29 29 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46832 * 300.00378 * 1 2 3 31 31 H 1.09007 * 109.47485 * 239.99927 * 2 1 3 32 32 H 1.09006 * 109.47183 * 120.00433 * 2 1 3 33 33 H 1.08999 * 110.24286 * 316.03817 * 4 3 2 34 34 H 1.09001 * 110.24386 * 77.94053 * 4 3 2 35 35 H 1.09005 * 111.08125 * 216.48650 * 5 4 3 36 36 H 1.09004 * 111.01595 * 92.61968 * 5 4 3 37 37 H 1.08997 * 109.49111 * 67.28875 * 9 8 6 38 38 H 1.09003 * 109.51406 * 307.21978 * 9 8 6 39 39 H 1.08997 * 109.62951 * 186.45854 * 10 9 8 40 40 H 1.09000 * 109.79489 * 65.96876 * 10 9 8 41 41 H 1.08991 * 109.47131 * 59.99494 * 14 12 11 42 42 H 1.09003 * 109.46218 * 299.99773 * 14 12 11 43 43 H 0.96995 * 120.00279 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.62941 * 68.24697 * 24 11 10 45 45 H 1.09002 * 109.63068 * 188.83115 * 24 11 10 46 46 H 1.09003 * 109.49284 * 292.70922 * 25 8 6 47 47 H 1.08998 * 109.49384 * 52.76057 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2945 2.1619 -1.2117 5 6 3.1775 3.3463 -0.7483 6 6 2.7704 3.4751 0.7378 7 1 3.6324 3.7462 1.3474 8 7 1.6994 4.4684 0.8934 9 6 2.2147 5.8315 0.7079 10 6 1.1153 6.8411 1.0547 11 7 -0.0828 6.5164 0.2659 12 6 -0.7087 7.4621 -0.4626 13 8 -0.2853 8.5985 -0.4731 14 6 -1.9353 7.1076 -1.2632 15 16 -2.5390 8.5798 -2.1258 16 6 -3.9340 7.8966 -2.9576 17 1 -4.1751 6.8507 -2.8380 18 6 -4.7230 8.7026 -3.7664 19 7 -5.7655 8.1923 -4.3874 20 14 -4.3056 10.5115 -3.9739 21 1 -3.3868 10.6783 -5.1285 22 1 -3.6468 11.0120 -2.7407 23 1 -5.5514 11.2822 -4.2172 24 6 -0.5836 5.1338 0.2978 25 6 0.5861 4.1901 -0.0238 26 6 2.2717 2.0960 1.1098 27 8 2.1216 1.6942 2.2442 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.8321 1.5530 -1.9384 34 1 1.3638 2.5297 -1.6436 35 1 2.9352 4.2551 -1.2993 36 1 4.2363 3.1051 -0.8433 37 1 2.5190 5.9672 -0.3299 38 1 3.0723 5.9887 1.3620 39 1 1.4528 7.8482 0.8103 40 1 0.8812 6.7812 2.1176 41 1 -2.7106 6.7346 -0.5940 42 1 -1.6832 6.3375 -1.9922 43 1 -6.3167 8.7555 -4.9530 44 1 -0.9768 4.9097 1.2894 45 1 -1.3698 5.0118 -0.4472 46 1 0.9131 4.3487 -1.0514 47 1 0.2629 3.1565 0.0996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = -69.136471 kcal Electronic energy + Delta-G solvation = -28363.553491 eV Core-core repulsion = 24479.087115 eV Total energy + Delta-G solvation = -3884.466375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.19007 -40.95083 -38.90545 -37.43061 -35.98554 -34.66973 -33.69854 -32.50485 -31.02968 -30.00673 -28.96289 -27.85594 -26.55078 -25.13092 -24.15780 -23.25218 -22.02206 -20.37952 -20.21472 -19.45658 -18.53935 -17.80774 -17.61976 -17.19605 -16.98621 -16.75794 -16.68394 -15.94207 -15.77849 -15.66883 -15.32297 -14.95371 -14.90690 -14.74873 -14.57848 -14.46943 -14.10093 -13.89950 -13.65710 -13.46499 -13.41904 -13.32193 -13.01365 -12.85946 -12.79266 -12.62031 -12.57724 -12.25491 -12.21796 -12.04662 -11.90475 -11.85343 -11.16835 -10.95184 -10.93473 -10.52292 -9.91306 -9.79193 -9.30343 -9.00056 -8.51355 -6.22319 0.96822 1.31449 1.36959 1.46623 1.50236 1.54237 1.98159 2.02187 2.25159 2.66824 2.81721 2.87079 3.27393 3.45715 3.47942 3.77833 3.87131 3.90163 4.04258 4.09905 4.12660 4.16927 4.21196 4.28842 4.30432 4.39501 4.47916 4.49399 4.58449 4.60228 4.68030 4.75279 4.79092 4.82137 4.85976 4.93535 4.97431 5.05632 5.26853 5.40784 5.57195 5.70949 5.78480 5.84465 6.08999 6.11619 6.22381 6.93962 7.04660 7.12685 8.60978 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.002679 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.811434 B =10447.458368 C =11482.306809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.615 5.615 4 C 0.093 3.907 5 C -0.158 4.158 6 C 0.057 3.943 7 H 0.125 0.875 8 N -0.527 5.527 9 C 0.053 3.947 10 C 0.115 3.885 11 N -0.606 5.606 12 C 0.537 3.463 13 O -0.560 6.560 14 C -0.107 4.107 15 S -0.174 6.174 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.237 1.237 23 H -0.260 1.260 24 C 0.108 3.892 25 C 0.041 3.959 26 C 0.521 3.479 27 O -0.568 6.568 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.261 -16.470 7.324 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.003 4.003 3 N -0.349 5.349 4 C -0.029 4.029 5 C -0.197 4.197 6 C -0.055 4.055 7 H 0.143 0.857 8 N -0.252 5.252 9 C -0.075 4.075 10 C -0.007 4.007 11 N -0.341 5.341 12 C 0.325 3.675 13 O -0.438 6.438 14 C -0.258 4.258 15 S 0.053 5.947 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.161 1.161 23 H -0.185 1.185 24 C -0.015 4.015 25 C -0.087 4.087 26 C 0.308 3.692 27 O -0.446 6.446 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.440 -15.131 8.262 27.512 hybrid contribution -0.868 -0.768 -0.984 1.520 sum 20.572 -15.899 7.279 26.999 Atomic orbital electron populations 1.22128 0.95568 1.03182 1.01610 1.21497 0.94512 0.80451 1.03844 1.48505 1.64657 1.14322 1.07366 1.22473 1.00309 0.93106 0.86965 1.23314 1.02224 0.99322 0.94873 1.22491 0.95304 0.89608 0.98090 0.85746 1.61904 1.08080 1.02204 1.53014 1.22492 0.97305 0.86076 1.01610 1.21793 0.83943 0.99377 0.95612 1.48111 1.29157 1.09836 1.46971 1.19980 0.83956 0.84666 0.78948 1.90677 1.66775 1.21487 1.64862 1.23275 0.98493 1.02095 1.01919 1.84721 1.34292 1.15826 1.59896 1.22441 1.13208 0.98967 1.32888 0.91898 1.25542 0.93670 1.02995 0.93672 1.70012 1.16819 1.38447 1.30198 0.85887 0.79305 0.80068 0.81247 1.18547 1.16108 1.18478 1.22114 0.96714 0.78988 1.03679 1.22740 0.91289 0.99478 0.95204 1.21007 0.76254 0.87835 0.84095 1.90691 1.54586 1.76205 1.23144 0.91739 0.89963 0.94598 0.87452 0.91371 0.87776 0.90450 0.88497 0.87282 0.93117 0.86944 0.89449 0.90240 0.87372 0.86878 0.91368 0.90142 0.88411 0.92202 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 71.98 0.74 -1.29 16 2 C 0.12 1.35 6.65 86.38 0.57 1.92 16 3 N -0.61 -8.18 2.53 -817.27 -2.07 -10.25 16 4 C 0.09 0.73 6.36 86.95 0.55 1.28 16 5 C -0.16 -1.18 6.07 31.77 0.19 -0.99 16 6 C 0.06 0.77 3.12 44.91 0.14 0.91 16 7 H 0.12 1.50 8.01 -2.39 -0.02 1.48 16 8 N -0.53 -8.44 4.61 -869.13 -4.01 -12.45 16 9 C 0.05 0.77 5.35 86.38 0.46 1.24 16 10 C 0.12 2.38 6.60 86.35 0.57 2.95 16 11 N -0.61 -15.16 3.00 -817.05 -2.45 -17.61 16 12 C 0.54 18.42 7.73 87.66 0.68 19.10 16 13 O -0.56 -23.47 15.31 -3.03 -0.05 -23.52 16 14 C -0.11 -3.98 4.52 71.24 0.32 -3.66 16 15 S -0.17 -8.67 18.55 -56.49 -1.05 -9.71 16 16 C -0.53 -30.22 10.04 67.95 0.68 -29.54 16 17 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 18 C 0.05 2.70 5.50 84.86 0.47 3.17 16 19 N -0.92 -55.19 13.97 21.65 0.30 -54.89 16 20 Si 0.91 44.45 27.74 68.60 1.90 46.35 16 21 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.11 2.15 6.53 86.50 0.57 2.71 16 25 C 0.04 0.66 3.86 86.54 0.33 1.00 16 26 C 0.52 10.11 6.56 87.90 0.58 10.68 16 27 O -0.57 -16.55 17.60 -3.05 -0.05 -16.60 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.98 7.93 -2.38 -0.02 0.96 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.63 6.26 -2.39 -0.01 0.61 16 35 H 0.10 0.74 5.90 -2.38 -0.01 0.73 16 36 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.05 0.72 6.93 -2.39 -0.02 0.70 16 38 H 0.11 1.19 8.02 -2.39 -0.02 1.17 16 39 H 0.09 2.07 7.06 -2.39 -0.02 2.05 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 3.79 7.99 -2.40 -0.02 3.77 16 42 H 0.11 3.79 7.67 -2.39 -0.02 3.77 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 1.90 6.02 -2.39 -0.01 1.88 16 46 H 0.06 0.86 5.89 -2.39 -0.01 0.85 16 47 H 0.09 1.43 6.16 -2.39 -0.01 1.41 16 Total: -1.00 -78.83 378.71 0.32 -78.51 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.93 Total: 10.68 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.85 Total: 9.49 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -8.23 Total: -95.20 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.12 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.71 kcal Total: -78.83 0.32 -78.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.377 kcal (2) G-P(sol) polarization free energy of solvation -78.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds