Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00044 * 2 1 4 4 N 1.46505 * 109.46934 * 124.99968 * 3 2 1 5 5 C 1.34776 * 119.99811 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00138 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 3 8 8 H 1.08992 * 109.47284 * 300.00452 * 7 5 4 9 9 C 1.53002 * 109.46958 * 60.00369 * 7 5 4 10 10 N 1.46906 * 109.46922 * 180.02562 * 7 5 4 11 11 C 1.46904 * 110.99841 * 299.30291 * 10 7 5 12 12 C 1.53240 * 109.33739 * 172.74962 * 11 10 7 13 13 N 1.47085 * 108.52154 * 53.82625 * 12 11 10 14 14 C 1.34773 * 120.87493 * 128.79510 * 13 12 11 15 15 O 1.21280 * 119.99552 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00579 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.47400 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00188 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99918 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00368 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99616 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47128 * 90.00042 * 22 20 18 24 24 H 1.48499 * 109.47303 * 209.99935 * 22 20 18 25 25 H 1.48496 * 109.47264 * 330.00058 * 22 20 18 26 26 C 1.47075 * 118.23896 * 308.81668 * 13 12 11 27 27 C 1.46896 * 110.99895 * 175.00371 * 10 7 5 28 28 H 1.07994 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99621 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99964 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46978 * 5.00174 * 3 2 1 32 32 H 1.09001 * 109.47324 * 244.99727 * 3 2 1 33 33 H 0.96993 * 120.00140 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.47142 * 59.99773 * 9 7 5 35 35 H 1.09004 * 109.47006 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.47097 * 299.99808 * 9 7 5 37 37 H 1.09000 * 109.49336 * 292.70649 * 11 10 7 38 38 H 1.08991 * 109.49364 * 52.78839 * 11 10 7 39 39 H 1.09007 * 109.62526 * 294.11763 * 12 11 10 40 40 H 1.08997 * 109.79066 * 173.63286 * 12 11 10 41 41 H 1.09001 * 109.46965 * 300.00247 * 16 14 13 42 42 H 1.09005 * 109.47217 * 59.99696 * 16 14 13 43 43 H 0.97001 * 120.00144 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.62535 * 291.47568 * 26 13 12 45 45 H 1.08998 * 109.62753 * 170.89763 * 26 13 12 46 46 H 1.08999 * 109.49203 * 307.21161 * 27 10 7 47 47 H 1.08998 * 109.49713 * 67.26346 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7145 3.3558 0.5784 7 6 4.7348 2.4367 2.4977 8 1 4.1768 2.3389 3.4289 9 6 5.7247 1.2768 2.3722 10 7 5.4685 3.7094 2.4984 11 6 6.2471 3.8688 1.2629 12 6 6.8492 5.2773 1.2207 13 7 7.6027 5.5008 2.4639 14 6 8.8756 5.9423 2.4313 15 8 9.4823 6.1207 3.4662 16 6 9.5453 6.2144 1.1089 17 16 11.2364 6.7917 1.3964 18 6 11.7671 7.0252 -0.2674 19 1 11.0918 6.8160 -1.0840 20 6 13.0529 7.4779 -0.5288 21 7 13.8760 7.7323 0.4664 22 14 13.6152 7.7261 -2.2927 23 1 13.3068 9.1145 -2.7199 24 1 15.0792 7.4942 -2.3829 25 1 12.9068 6.7669 -3.1777 26 6 6.9304 5.2291 3.7435 27 6 6.3252 3.8225 3.6863 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.0451 0.5744 1.7352 34 1 6.2827 1.3745 1.4410 35 1 6.4168 1.2971 3.2141 36 1 5.1799 0.3326 2.3720 37 1 7.0482 3.1300 1.2399 38 1 5.5952 3.7259 0.4012 39 1 6.0505 6.0146 1.1390 40 1 7.5190 5.3669 0.3654 41 1 9.5690 5.2985 0.5185 42 1 8.9871 6.9799 0.5697 43 1 14.7745 8.0490 0.2838 44 1 6.1395 5.9618 3.9043 45 1 7.6546 5.2835 4.5563 46 1 5.7298 3.6461 4.5822 47 1 7.1249 3.0840 3.6299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = -28.316423 kcal Electronic energy + Delta-G solvation = -27346.292306 eV Core-core repulsion = 23463.596020 eV Total energy + Delta-G solvation = -3882.696285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79750 -39.55893 -37.83833 -36.18089 -34.95413 -33.34231 -32.40130 -31.70246 -30.82094 -29.02805 -26.91916 -26.59383 -25.44893 -23.93349 -23.77398 -21.30570 -20.97102 -20.10878 -18.73669 -17.71212 -17.33782 -17.11631 -16.50424 -16.07693 -15.61907 -15.52237 -15.30929 -15.01451 -14.77839 -14.64937 -14.59323 -14.23272 -13.91185 -13.66812 -13.38479 -13.08223 -12.95761 -12.75191 -12.63471 -12.56074 -12.15739 -12.08712 -11.78778 -11.72400 -11.35480 -11.25559 -11.10576 -11.03798 -10.98381 -10.72933 -10.33042 -9.87415 -9.77204 -9.44697 -9.28574 -9.03902 -8.71661 -8.30265 -8.18944 -6.46731 -6.18830 -3.89010 1.49589 2.29079 2.77013 2.99188 3.11359 3.24503 3.28352 3.32483 3.59449 3.70797 4.18889 4.23196 4.31454 4.49728 4.52858 4.61055 4.78172 4.89629 4.99239 5.01402 5.07598 5.10185 5.16214 5.23159 5.25169 5.28160 5.31496 5.38362 5.43685 5.59249 5.64967 5.74922 5.81687 5.87128 5.92069 5.94276 5.96232 6.04815 6.13545 6.17217 6.59532 6.68394 6.81305 7.09223 7.62278 7.65507 7.87560 8.38211 8.62098 9.26477 10.88603 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.002143 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.645267 B =13062.814099 C =14246.443531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.730 5.730 5 C 0.519 3.481 6 O -0.516 6.516 7 C 0.066 3.934 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.514 5.514 11 C 0.028 3.972 12 C 0.117 3.883 13 N -0.622 5.622 14 C 0.535 3.465 15 O -0.520 6.520 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.120 3.880 27 C 0.041 3.959 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.047 -18.188 2.774 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.384 5.384 5 C 0.305 3.695 6 O -0.390 6.390 7 C -0.047 4.047 8 H 0.127 0.873 9 C -0.245 4.245 10 N -0.238 5.238 11 C -0.100 4.100 12 C -0.007 4.007 13 N -0.359 5.359 14 C 0.323 3.677 15 O -0.395 6.395 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.003 4.003 27 C -0.087 4.087 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.329 -16.748 3.819 31.437 hybrid contribution 0.130 -1.237 -2.136 2.472 sum -26.199 -17.984 1.683 31.822 Atomic orbital electron populations 1.24007 0.95802 1.02515 0.97914 1.23004 0.96256 0.98099 1.02284 1.20403 0.91819 0.95567 0.89834 1.45992 1.41350 1.20033 1.31010 1.20511 0.80776 0.82010 0.86220 1.90670 1.66910 1.34750 1.46701 1.21639 0.94944 0.90161 0.97907 0.87270 1.22448 1.00325 0.97937 1.03808 1.61892 1.28705 1.30296 1.02942 1.22835 0.96508 0.96785 0.93856 1.21772 0.95791 0.96211 0.86887 1.48195 1.12841 1.67855 1.06980 1.20322 0.80278 0.75708 0.91351 1.90680 1.63139 1.50706 1.34935 1.23549 1.05018 1.04558 0.96952 1.85372 1.01595 1.85187 1.11305 1.22869 1.01400 1.51894 0.92102 0.90946 1.24986 0.95511 0.94740 0.98344 1.70019 1.06904 1.42371 1.31015 0.86175 0.77856 0.78691 0.82822 1.20257 1.20781 1.19703 1.21569 0.96743 0.94834 0.87202 1.22564 0.95428 0.97790 0.92951 0.88093 0.87839 0.86685 0.90955 0.90568 0.76544 0.91433 0.90866 0.91545 0.94457 0.87138 0.90614 0.89061 0.89398 0.89212 0.92223 0.91068 0.88517 0.89647 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 14.32 29.01 0.42 -0.18 16 2 C -0.18 -0.72 9.63 -36.03 -0.35 -1.06 16 3 C 0.15 0.88 6.11 -5.19 -0.03 0.85 16 4 N -0.73 -4.32 5.44 -61.47 -0.33 -4.66 16 5 C 0.52 4.64 6.82 -10.99 -0.07 4.57 16 6 O -0.52 -6.66 13.91 5.56 0.08 -6.58 16 7 C 0.07 0.50 2.77 -68.86 -0.19 0.31 16 8 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 9 C -0.19 -1.17 8.41 37.16 0.31 -0.86 16 10 N -0.51 -5.32 4.41 -227.73 -1.00 -6.33 16 11 C 0.03 0.33 4.58 -3.70 -0.02 0.31 16 12 C 0.12 1.54 6.50 -3.60 -0.02 1.52 16 13 N -0.62 -9.60 3.01 -172.46 -0.52 -10.12 16 14 C 0.54 10.67 7.73 -10.99 -0.08 10.58 16 15 O -0.52 -12.20 15.31 5.56 0.09 -12.12 16 16 C -0.15 -3.18 4.52 36.01 0.16 -3.02 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 22 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.12 1.54 6.60 -3.61 -0.02 1.52 16 27 C 0.04 0.41 5.14 -3.70 -0.02 0.39 16 28 H 0.10 0.36 7.84 -52.49 -0.41 -0.05 16 29 H 0.10 0.26 8.06 -52.49 -0.42 -0.16 16 30 H 0.12 0.35 8.06 -52.49 -0.42 -0.08 16 31 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 1.32 7.88 -40.82 -0.32 1.00 16 34 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 35 H 0.07 0.48 6.69 -51.93 -0.35 0.13 16 36 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 37 H 0.04 0.44 6.71 -51.93 -0.35 0.10 16 38 H 0.11 1.37 5.30 -51.93 -0.28 1.10 16 39 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.09 1.20 6.02 -51.93 -0.31 0.88 16 41 H 0.09 1.73 7.66 -51.92 -0.40 1.33 16 42 H 0.09 1.79 8.00 -51.91 -0.42 1.37 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.36 7.06 -51.93 -0.37 0.99 16 46 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 47 H 0.04 0.47 6.81 -51.93 -0.35 0.11 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -36.63 389.53 -9.23 -45.86 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.18 Total: -0.75 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 0.28 Total: 1.77 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.12 Total: -46.83 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.16 Total: -18.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.63 -9.23 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.546 kcal (2) G-P(sol) polarization free energy of solvation -36.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds