Wall clock time and date at job start Sat Apr 11 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 119.99893 * 2 1 4 4 N 1.46505 * 109.47425 * 124.99568 * 3 2 1 5 5 C 1.34776 * 120.00130 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99984 * 179.97438 * 5 4 3 8 8 H 1.08995 * 109.46553 * 46.60467 * 7 5 4 9 9 C 1.52997 * 109.46932 * 286.59884 * 7 5 4 10 10 N 1.46900 * 109.46878 * 166.60238 * 7 5 4 11 11 C 1.46891 * 111.00156 * 72.29471 * 10 7 5 12 12 C 1.53240 * 109.34017 * 187.25201 * 11 10 7 13 13 N 1.47077 * 108.52374 * 306.16679 * 12 11 10 14 14 C 1.34768 * 120.88691 * 231.19136 * 13 12 11 15 15 O 1.21285 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00562 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47453 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00093 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99926 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00238 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46945 * 89.99586 * 22 20 18 24 24 H 1.48493 * 109.47425 * 210.00030 * 22 20 18 25 25 H 1.48504 * 109.47019 * 329.99869 * 22 20 18 26 26 C 1.47087 * 118.23446 * 51.45704 * 13 12 11 27 27 C 1.46903 * 110.99597 * 196.59606 * 10 7 5 28 28 H 1.08005 * 120.00325 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.00130 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00227 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47409 * 4.99643 * 3 2 1 32 32 H 1.09004 * 109.47115 * 244.99413 * 3 2 1 33 33 H 0.96998 * 119.99836 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.47161 * 60.00626 * 9 7 5 35 35 H 1.09005 * 109.46929 * 179.97438 * 9 7 5 36 36 H 1.08990 * 109.47749 * 300.00122 * 9 7 5 37 37 H 1.08998 * 109.49845 * 67.29257 * 11 10 7 38 38 H 1.09006 * 109.51851 * 307.22088 * 11 10 7 39 39 H 1.09004 * 109.62817 * 186.45799 * 12 11 10 40 40 H 1.09001 * 109.63089 * 65.88005 * 12 11 10 41 41 H 1.09003 * 109.46878 * 299.99849 * 16 14 13 42 42 H 1.09002 * 109.46811 * 59.99570 * 16 14 13 43 43 H 0.97003 * 119.99441 * 180.02562 * 21 20 18 44 44 H 1.09007 * 109.62310 * 68.25334 * 26 13 12 45 45 H 1.08992 * 109.62926 * 188.83160 * 26 13 12 46 46 H 1.09000 * 109.49085 * 292.70649 * 27 10 7 47 47 H 1.08997 * 109.49286 * 52.79075 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7788 2.4087 1.3329 6 8 3.7157 3.3552 0.5772 7 6 4.7353 2.4366 2.4972 8 1 5.2794 1.4933 2.5430 9 6 3.9520 2.6374 3.7960 10 7 5.6864 3.5425 2.3231 11 6 5.0330 4.8390 2.5470 12 6 6.0041 5.9665 2.1811 13 7 7.2564 5.7646 2.9255 14 6 7.8003 6.7635 3.6484 15 8 7.2566 7.8469 3.6909 16 6 9.0839 6.5346 4.4041 17 16 9.5541 8.0534 5.2689 18 6 11.0423 7.5158 6.0442 19 1 11.3911 6.5039 5.9002 20 6 11.7663 8.3928 6.8400 21 7 11.3413 9.6263 7.0150 22 14 13.3435 7.8227 7.6624 23 1 14.4941 8.0829 6.7604 24 1 13.5344 8.5642 8.9348 25 1 13.2560 6.3676 7.9459 26 6 7.9027 4.4452 2.8552 27 6 6.8537 3.3757 3.1992 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.0444 0.5749 1.7357 34 1 3.2462 1.8167 3.9252 35 1 4.6437 2.6571 4.6382 36 1 3.4079 3.5806 3.7501 37 1 4.7511 4.9279 3.5961 38 1 4.1417 4.9101 1.9235 39 1 5.5678 6.9279 2.4524 40 1 6.2066 5.9424 1.1103 41 1 8.9408 5.7329 5.1286 42 1 9.8723 6.2560 3.7048 43 1 11.8475 10.2393 7.5709 44 1 8.2842 4.2776 1.8479 45 1 8.7222 4.4002 3.5723 46 1 6.5464 3.4850 4.2393 47 1 7.2831 2.3853 3.0485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:07 Heat of formation + Delta-G solvation = -31.214714 kcal Electronic energy + Delta-G solvation = -27215.125546 eV Core-core repulsion = 23332.303582 eV Total energy + Delta-G solvation = -3882.821965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71065 -39.55747 -37.86536 -36.16554 -34.92657 -33.30544 -32.41627 -31.55556 -31.05619 -28.94735 -26.98684 -26.60002 -25.46648 -23.92367 -23.73871 -21.30848 -20.97205 -20.06362 -18.75208 -17.69030 -17.49451 -16.99937 -16.51291 -15.93737 -15.61839 -15.42968 -15.36462 -15.19745 -14.79402 -14.67815 -14.58935 -13.97040 -13.83934 -13.79914 -13.35483 -13.13543 -13.02097 -12.72212 -12.64159 -12.58223 -12.13703 -12.04438 -11.76753 -11.72390 -11.45218 -11.23110 -11.07398 -11.05392 -11.00010 -10.74064 -10.40389 -9.89902 -9.78857 -9.44013 -9.28197 -9.05422 -8.72278 -8.30982 -8.20048 -6.48180 -6.20191 -3.90599 1.49841 2.33076 2.77703 2.98918 3.11127 3.23025 3.26973 3.30954 3.59687 3.71249 4.19769 4.21558 4.34565 4.48600 4.51565 4.61312 4.74773 4.85734 5.01396 5.01948 5.05166 5.12881 5.14800 5.18738 5.24035 5.26918 5.31243 5.37574 5.51198 5.53414 5.64126 5.72509 5.79103 5.86704 5.90587 5.94101 5.94951 6.07663 6.13505 6.13643 6.58085 6.69331 6.80879 7.11650 7.60445 7.65188 7.91278 8.36387 8.62102 9.24943 10.87229 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.001881 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.595158 B =14880.157627 C =15316.002295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.521 3.479 6 O -0.518 6.518 7 C 0.066 3.934 8 H 0.105 0.895 9 C -0.182 4.182 10 N -0.516 5.516 11 C 0.038 3.962 12 C 0.121 3.879 13 N -0.622 5.622 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.115 3.885 27 C 0.040 3.960 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 -24.238 -11.461 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.307 3.693 6 O -0.392 6.392 7 C -0.047 4.047 8 H 0.123 0.877 9 C -0.241 4.241 10 N -0.240 5.240 11 C -0.090 4.090 12 C -0.002 4.002 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.392 6.392 16 C -0.300 4.300 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.009 4.009 27 C -0.089 4.089 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.495 -21.715 -12.358 31.690 hybrid contribution 1.374 -2.248 1.542 3.053 sum -18.121 -23.963 -10.816 31.931 Atomic orbital electron populations 1.24006 0.95813 1.02504 0.97981 1.23005 0.96239 0.98115 1.02230 1.20389 0.91787 0.95485 0.89913 1.45984 1.41390 1.20220 1.30938 1.20532 0.80486 0.82207 0.86119 1.90692 1.67042 1.34964 1.46472 1.21605 0.93394 0.97198 0.92464 0.87710 1.22402 1.01243 1.03391 0.97104 1.61801 1.06971 1.01367 1.53874 1.22696 0.98245 0.87962 1.00054 1.21589 0.83818 0.98575 0.96219 1.48191 1.25319 1.12143 1.50252 1.20327 0.85822 0.83460 0.78169 1.90689 1.62454 1.24127 1.61976 1.23545 0.96697 1.07528 1.02278 1.85422 1.29716 1.09146 1.59157 1.22863 1.09691 1.00837 1.34948 0.90962 1.24988 0.98191 0.94550 0.95841 1.70023 1.38598 1.04575 1.37057 0.86172 0.81976 0.78699 0.78672 1.20264 1.20772 1.19726 1.21869 0.94825 0.81316 1.02882 1.22649 0.91460 0.99783 0.94961 0.88121 0.87845 0.86673 0.91095 0.90565 0.76607 0.91513 0.91009 0.91226 0.94230 0.88049 0.88695 0.91005 0.89412 0.89260 0.92203 0.90634 0.88817 0.93737 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 14.32 29.02 0.42 -0.18 16 2 C -0.18 -0.71 9.63 -36.03 -0.35 -1.05 16 3 C 0.15 0.89 6.11 -5.19 -0.03 0.86 16 4 N -0.73 -4.38 5.55 -61.47 -0.34 -4.72 16 5 C 0.52 4.73 6.95 -10.98 -0.08 4.66 16 6 O -0.52 -6.83 14.36 5.56 0.08 -6.75 16 7 C 0.07 0.50 2.70 -68.86 -0.19 0.32 16 8 H 0.11 0.57 7.84 -51.93 -0.41 0.16 16 9 C -0.18 -1.21 8.31 37.16 0.31 -0.91 16 10 N -0.52 -5.30 4.31 -227.44 -0.98 -6.28 16 11 C 0.04 0.46 4.24 -3.70 -0.02 0.44 16 12 C 0.12 1.72 6.60 -3.60 -0.02 1.69 16 13 N -0.62 -9.53 3.00 -172.17 -0.52 -10.04 16 14 C 0.53 10.58 7.73 -10.99 -0.08 10.50 16 15 O -0.52 -12.29 15.31 5.55 0.09 -12.21 16 16 C -0.15 -3.10 4.52 36.01 0.16 -2.94 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.12 1.33 6.53 -3.36 -0.02 1.31 16 27 C 0.04 0.38 5.38 -3.46 -0.02 0.36 16 28 H 0.10 0.36 7.84 -52.48 -0.41 -0.05 16 29 H 0.10 0.26 8.06 -52.48 -0.42 -0.17 16 30 H 0.12 0.33 8.06 -52.49 -0.42 -0.09 16 31 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.31 8.46 -40.82 -0.35 0.97 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.49 7.13 -51.93 -0.37 0.12 16 36 H 0.07 0.57 6.48 -51.93 -0.34 0.24 16 37 H 0.04 0.48 6.69 -51.93 -0.35 0.14 16 38 H 0.10 1.28 5.95 -51.93 -0.31 0.97 16 39 H 0.09 1.49 7.06 -51.93 -0.37 1.12 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.66 7.67 -51.92 -0.40 1.26 16 42 H 0.09 1.71 7.99 -51.91 -0.41 1.30 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 46 H 0.04 0.44 7.20 -51.93 -0.37 0.07 16 47 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -36.78 392.05 -9.28 -46.05 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.29 Total: -0.97 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 0.28 Total: 2.06 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.10 Total: -46.61 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.78 -9.28 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.840 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds