Wall clock time and date at job start Sat Apr 11 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 119.99893 * 2 1 4 4 N 1.46505 * 109.47425 * 124.99568 * 3 2 1 5 5 C 1.34776 * 120.00130 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99984 * 179.97438 * 5 4 3 8 8 H 1.08995 * 109.46553 * 46.60467 * 7 5 4 9 9 C 1.52997 * 109.46932 * 286.59884 * 7 5 4 10 10 N 1.46900 * 109.46878 * 166.60238 * 7 5 4 11 11 C 1.46891 * 111.00156 * 72.29471 * 10 7 5 12 12 C 1.53240 * 109.34017 * 187.25201 * 11 10 7 13 13 N 1.47077 * 108.52374 * 306.16679 * 12 11 10 14 14 C 1.34768 * 120.88691 * 231.19136 * 13 12 11 15 15 O 1.21285 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00562 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47453 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00093 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99926 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00238 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46945 * 89.99586 * 22 20 18 24 24 H 1.48493 * 109.47425 * 210.00030 * 22 20 18 25 25 H 1.48504 * 109.47019 * 329.99869 * 22 20 18 26 26 C 1.47087 * 118.23446 * 51.45704 * 13 12 11 27 27 C 1.46903 * 110.99597 * 196.59606 * 10 7 5 28 28 H 1.08005 * 120.00325 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.00130 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00227 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47409 * 4.99643 * 3 2 1 32 32 H 1.09004 * 109.47115 * 244.99413 * 3 2 1 33 33 H 0.96998 * 119.99836 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.47161 * 60.00626 * 9 7 5 35 35 H 1.09005 * 109.46929 * 179.97438 * 9 7 5 36 36 H 1.08990 * 109.47749 * 300.00122 * 9 7 5 37 37 H 1.08998 * 109.49845 * 67.29257 * 11 10 7 38 38 H 1.09006 * 109.51851 * 307.22088 * 11 10 7 39 39 H 1.09004 * 109.62817 * 186.45799 * 12 11 10 40 40 H 1.09001 * 109.63089 * 65.88005 * 12 11 10 41 41 H 1.09003 * 109.46878 * 299.99849 * 16 14 13 42 42 H 1.09002 * 109.46811 * 59.99570 * 16 14 13 43 43 H 0.97003 * 119.99441 * 180.02562 * 21 20 18 44 44 H 1.09007 * 109.62310 * 68.25334 * 26 13 12 45 45 H 1.08992 * 109.62926 * 188.83160 * 26 13 12 46 46 H 1.09000 * 109.49085 * 292.70649 * 27 10 7 47 47 H 1.08997 * 109.49286 * 52.79075 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7788 2.4087 1.3329 6 8 3.7157 3.3552 0.5772 7 6 4.7353 2.4366 2.4972 8 1 5.2794 1.4933 2.5430 9 6 3.9520 2.6374 3.7960 10 7 5.6864 3.5425 2.3231 11 6 5.0330 4.8390 2.5470 12 6 6.0041 5.9665 2.1811 13 7 7.2564 5.7646 2.9255 14 6 7.8003 6.7635 3.6484 15 8 7.2566 7.8469 3.6909 16 6 9.0839 6.5346 4.4041 17 16 9.5541 8.0534 5.2689 18 6 11.0423 7.5158 6.0442 19 1 11.3911 6.5039 5.9002 20 6 11.7663 8.3928 6.8400 21 7 11.3413 9.6263 7.0150 22 14 13.3435 7.8227 7.6624 23 1 14.4941 8.0829 6.7604 24 1 13.5344 8.5642 8.9348 25 1 13.2560 6.3676 7.9459 26 6 7.9027 4.4452 2.8552 27 6 6.8537 3.3757 3.1992 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.0444 0.5749 1.7357 34 1 3.2462 1.8167 3.9252 35 1 4.6437 2.6571 4.6382 36 1 3.4079 3.5806 3.7501 37 1 4.7511 4.9279 3.5961 38 1 4.1417 4.9101 1.9235 39 1 5.5678 6.9279 2.4524 40 1 6.2066 5.9424 1.1103 41 1 8.9408 5.7329 5.1286 42 1 9.8723 6.2560 3.7048 43 1 11.8475 10.2393 7.5709 44 1 8.2842 4.2776 1.8479 45 1 8.7222 4.4002 3.5723 46 1 6.5464 3.4850 4.2393 47 1 7.2831 2.3853 3.0485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:06 Heat of formation + Delta-G solvation = -58.984266 kcal Electronic energy + Delta-G solvation = -27216.329724 eV Core-core repulsion = 23332.303582 eV Total energy + Delta-G solvation = -3884.026143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57988 -40.71914 -38.92554 -36.76289 -36.03349 -34.57652 -33.84208 -32.67213 -31.87973 -30.35253 -27.78703 -27.54331 -27.36237 -24.76300 -24.65629 -22.33259 -21.53571 -20.68639 -20.13484 -19.39806 -18.33318 -18.00671 -17.43178 -16.96257 -16.86312 -16.74559 -16.50148 -16.12465 -15.96587 -15.88692 -15.53038 -15.28772 -14.71952 -14.60662 -14.48776 -14.35504 -14.16888 -13.69415 -13.46428 -13.32318 -13.26989 -13.15653 -13.08220 -12.88324 -12.78103 -12.57599 -12.37327 -12.12267 -12.03850 -11.97713 -11.70342 -11.13396 -11.00878 -10.82947 -10.46874 -10.25432 -10.00491 -9.82362 -9.27047 -8.67177 -8.33526 -6.12354 1.17849 1.25252 1.43738 1.46186 1.55252 1.57028 1.65753 2.05358 2.25568 2.28191 2.92089 3.00756 3.25256 3.63051 3.73629 3.85372 3.89269 3.96477 4.04417 4.08355 4.17098 4.20435 4.23567 4.31995 4.38242 4.44601 4.55658 4.57081 4.62719 4.71764 4.75542 4.77935 4.84147 4.85799 5.01106 5.01360 5.15996 5.40280 5.42729 5.47206 5.65525 5.79173 5.84795 5.97501 6.20776 6.30458 6.60856 7.07480 7.11372 7.30895 8.75800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.001881 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.595158 B =14880.157627 C =15316.002295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.715 5.715 5 C 0.517 3.483 6 O -0.567 6.567 7 C 0.069 3.931 8 H 0.140 0.860 9 C -0.177 4.177 10 N -0.527 5.527 11 C 0.054 3.946 12 C 0.121 3.879 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.256 1.256 26 C 0.105 3.895 27 C 0.045 3.955 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 -28.677 -11.142 35.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.023 3.977 4 N -0.369 5.369 5 C 0.303 3.697 6 O -0.445 6.445 7 C -0.043 4.043 8 H 0.157 0.843 9 C -0.236 4.236 10 N -0.251 5.251 11 C -0.074 4.074 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.320 3.680 15 O -0.448 6.448 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.179 1.179 26 C -0.018 4.018 27 C -0.083 4.083 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.824 -26.262 -12.050 34.486 hybrid contribution 1.019 -0.975 1.314 1.927 sum -17.804 -27.237 -10.737 34.266 Atomic orbital electron populations 1.24166 0.95829 1.03099 0.97056 1.22951 0.96243 0.97480 1.02974 1.20359 0.91513 0.96401 0.89381 1.45868 1.40228 1.19912 1.30850 1.20889 0.80711 0.82055 0.86011 1.90680 1.68660 1.36845 1.48318 1.21721 0.93046 0.97435 0.92058 0.84276 1.22359 1.01502 1.03285 0.96469 1.61733 1.07845 1.01116 1.54413 1.22416 0.97146 0.88425 0.99426 1.21620 0.83813 0.98776 0.96016 1.48197 1.25172 1.12617 1.48358 1.20225 0.85539 0.83654 0.78616 1.90672 1.63699 1.26381 1.64072 1.23346 0.97608 1.03829 1.02385 1.85656 1.30912 1.15252 1.60957 1.23202 1.09560 1.01461 1.35016 0.89681 1.26148 1.02195 0.94462 0.96374 1.70197 1.40467 1.06155 1.38057 0.84933 0.76668 0.78907 0.77342 1.19372 1.20398 1.17932 1.22245 0.95786 0.79720 1.04015 1.22685 0.90443 1.00553 0.94623 0.88573 0.86286 0.85013 0.92509 0.91855 0.74672 0.89043 0.90699 0.93383 0.94637 0.88906 0.90974 0.90830 0.87114 0.87328 0.92037 0.89404 0.87966 0.93803 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 14.32 67.78 0.97 0.08 16 2 C -0.18 -1.07 9.63 25.65 0.25 -0.83 16 3 C 0.15 1.65 6.11 85.63 0.52 2.17 16 4 N -0.72 -7.15 5.55 -466.77 -2.59 -9.74 16 5 C 0.52 8.61 6.95 87.66 0.61 9.22 16 6 O -0.57 -14.99 14.36 -3.04 -0.04 -15.03 16 7 C 0.07 0.85 2.70 44.17 0.12 0.97 16 8 H 0.14 0.81 7.84 -2.39 -0.02 0.79 16 9 C -0.18 -1.90 8.31 71.98 0.60 -1.30 16 10 N -0.53 -9.67 4.31 -873.48 -3.76 -13.43 16 11 C 0.05 1.29 4.24 86.39 0.37 1.66 16 12 C 0.12 3.49 6.60 86.35 0.57 4.06 16 13 N -0.61 -18.28 3.00 -817.03 -2.45 -20.73 16 14 C 0.53 21.29 7.73 87.66 0.68 21.97 16 15 O -0.57 -28.29 15.31 -3.05 -0.05 -28.33 16 16 C -0.12 -4.92 4.52 71.24 0.32 -4.60 16 17 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 18 C -0.54 -31.14 9.50 67.95 0.65 -30.49 16 19 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 22 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 26 C 0.10 2.15 6.53 86.50 0.57 2.71 16 27 C 0.04 0.69 5.38 86.54 0.47 1.15 16 28 H 0.10 0.60 7.84 -2.91 -0.02 0.58 16 29 H 0.12 0.30 8.06 -2.91 -0.02 0.28 16 30 H 0.13 0.38 8.06 -2.91 -0.02 0.35 16 31 H 0.06 0.80 7.79 -2.38 -0.02 0.78 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 1.40 8.46 -92.71 -0.78 0.61 16 34 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.07 0.80 7.13 -2.38 -0.02 0.78 16 36 H 0.05 0.74 6.48 -2.39 -0.02 0.73 16 37 H 0.04 0.86 6.69 -2.39 -0.02 0.85 16 38 H 0.09 2.42 5.95 -2.38 -0.01 2.40 16 39 H 0.07 2.42 7.06 -2.38 -0.02 2.40 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 4.00 7.67 -2.39 -0.02 3.98 16 42 H 0.11 4.00 7.99 -2.39 -0.02 3.98 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.10 1.95 6.02 -2.39 -0.01 1.93 16 46 H 0.04 0.71 7.20 -2.39 -0.02 0.70 16 47 H 0.12 1.07 7.92 -2.39 -0.02 1.05 16 Total: -1.00 -84.25 392.05 -0.41 -84.66 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.19 Total: 15.25 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 7.14 Total: 7.98 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -8.52 Total: -100.07 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.09 Total: -43.36 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -84.25 -0.41 -84.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.677 kcal (2) G-P(sol) polarization free energy of solvation -84.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds