Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.47101 * 2 1 4 4 C 1.81410 * 102.99869 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46624 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73045 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08993 * 115.51974 * 9.41529 * 9 8 6 11 11 C 1.53008 * 117.44056 * 223.99576 * 9 8 6 12 12 H 1.09000 * 119.52103 * 4.08996 * 11 9 8 13 13 C 1.54372 * 118.12868 * 160.68659 * 11 9 8 14 14 N 1.48557 * 104.59581 * 87.22658 * 13 11 9 15 15 C 1.46903 * 111.00361 * 200.95960 * 14 13 11 16 16 C 1.50695 * 109.47526 * 190.00490 * 15 14 13 17 17 O 1.21290 * 119.99766 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00305 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00146 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99777 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00042 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47003 * 90.00079 * 23 21 19 25 25 H 1.48501 * 109.46856 * 209.99927 * 23 21 19 26 26 H 1.48499 * 109.46943 * 329.99962 * 23 21 19 27 27 C 1.52015 * 104.44324 * 320.30172 * 14 13 11 28 28 C 1.52999 * 117.44254 * 154.84002 * 9 8 6 29 29 H 1.09003 * 119.52630 * 355.90251 * 28 9 8 30 30 H 1.08999 * 109.46468 * 299.99360 * 1 2 3 31 31 H 1.08993 * 109.47042 * 59.99477 * 1 2 3 32 32 H 1.09003 * 109.46797 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46819 * 240.00359 * 2 1 3 34 34 H 1.08998 * 109.47394 * 120.00806 * 2 1 3 35 35 H 1.09001 * 109.46661 * 60.00734 * 4 3 2 36 36 H 1.08993 * 109.47380 * 300.00472 * 4 3 2 37 37 H 1.09001 * 109.46782 * 60.00898 * 5 4 3 38 38 H 1.08993 * 109.47555 * 300.00455 * 5 4 3 39 39 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 40 40 H 1.08998 * 110.41539 * 206.00882 * 13 11 9 41 41 H 1.09003 * 110.40896 * 328.45271 * 13 11 9 42 42 H 1.09004 * 109.46710 * 310.00546 * 15 14 13 43 43 H 1.09009 * 109.46903 * 70.00076 * 15 14 13 44 44 H 0.96999 * 119.99267 * 359.97438 * 18 16 15 45 45 H 0.96998 * 120.00469 * 179.97438 * 22 21 19 46 46 H 1.09001 * 111.92198 * 281.02182 * 27 14 13 47 47 H 1.08997 * 110.49448 * 157.46418 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.6066 2.8816 0.0002 6 6 6.1039 2.7116 0.0002 7 8 6.5881 1.5997 0.0056 8 7 6.9051 3.7955 0.0003 9 6 8.3608 3.6303 0.0063 10 1 8.7185 2.6128 -0.1504 11 6 9.1679 4.5241 0.9502 12 1 8.6457 5.1984 1.6289 13 6 10.6018 4.0864 1.3182 14 7 11.4540 4.6519 0.2406 15 6 12.7357 3.9393 0.1544 16 6 13.6640 4.6851 -0.7692 17 8 13.2941 5.7092 -1.3035 18 7 14.9049 4.2136 -1.0024 19 6 15.7492 4.8917 -1.8430 20 1 15.4201 5.8041 -2.3182 21 6 17.0287 4.4059 -2.0830 22 7 17.4293 3.2961 -1.5045 23 14 18.1788 5.3296 -3.2290 24 1 18.9684 6.3158 -2.4485 25 1 19.0994 4.3679 -3.8870 26 1 17.3829 6.0393 -4.2625 27 6 10.6418 4.4528 -1.0289 28 6 9.2022 4.7704 -0.5709 29 1 8.7055 5.6281 -1.0246 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.2406 0.9542 -0.8891 36 1 4.2400 0.9543 0.8909 37 1 4.3032 3.4335 0.8899 38 1 4.3038 3.4326 -0.8901 39 1 6.5179 4.6849 -0.0037 40 1 10.8887 4.4987 2.2855 41 1 10.6761 2.9990 1.3302 42 1 13.1836 3.8760 1.1462 43 1 12.5674 2.9345 -0.2331 44 1 15.2005 3.3943 -0.5753 45 1 18.3223 2.9567 -1.6722 46 1 10.7065 3.4288 -1.3969 47 1 10.9595 5.1554 -1.7992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113942326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -63.262039 kcal Electronic energy + Delta-G solvation = -25911.004367 eV Core-core repulsion = 22026.792726 eV Total energy + Delta-G solvation = -3884.211641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43741 -40.44696 -39.61697 -36.33705 -35.75939 -34.21445 -33.66769 -33.43537 -33.12500 -29.45614 -29.08055 -26.83087 -26.01759 -24.27671 -23.37454 -22.04669 -21.35931 -21.27210 -20.87886 -19.85340 -18.38938 -18.03216 -17.62184 -17.00578 -16.91166 -16.61875 -16.38768 -16.18951 -15.76950 -15.73451 -15.49574 -14.99655 -14.85945 -14.76617 -14.56532 -14.13882 -13.88975 -13.75094 -13.55184 -13.33061 -13.15512 -13.04136 -12.92268 -12.60808 -12.52448 -12.42344 -12.39001 -12.29583 -12.22313 -12.12148 -11.90542 -11.48334 -11.15636 -10.99078 -10.96999 -10.32352 -10.00497 -9.84805 -9.40305 -8.71273 -8.46036 -5.94776 0.57235 1.38100 1.41490 1.44567 1.54322 1.56000 1.94407 2.06106 2.28813 2.64507 2.79655 3.20626 3.36349 3.53401 3.60187 3.66395 3.83348 3.85231 3.90576 4.01072 4.07014 4.08286 4.24874 4.27523 4.39672 4.47132 4.49756 4.51928 4.52558 4.61572 4.67277 4.78210 4.83567 4.87520 4.90722 4.90937 5.09928 5.12571 5.22411 5.41033 5.41518 5.69530 5.84946 6.06686 6.43039 6.61285 7.13451 7.13606 7.57032 8.13077 8.71529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.001426 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.489380 B =19624.067814 C =19863.357702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 S -0.285 6.285 4 C -0.064 4.064 5 C -0.113 4.113 6 C 0.523 3.477 7 O -0.582 6.582 8 N -0.684 5.684 9 C 0.113 3.887 10 H 0.113 0.887 11 C -0.153 4.153 12 H 0.143 0.857 13 C 0.058 3.942 14 N -0.503 5.503 15 C 0.044 3.956 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.063 3.937 28 C -0.163 4.163 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.421 0.579 40 H 0.102 0.898 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.047 0.953 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.664 -5.081 6.826 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.234 4.234 3 S -0.059 6.059 4 C -0.213 4.213 5 C -0.154 4.154 6 C 0.310 3.690 7 O -0.461 6.461 8 N -0.335 5.335 9 C 0.005 3.995 10 H 0.131 0.869 11 C -0.173 4.173 12 H 0.161 0.839 13 C -0.070 4.070 14 N -0.228 5.228 15 C -0.088 4.088 16 C 0.230 3.770 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.064 4.064 28 C -0.183 4.183 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.259 0.741 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.870 -3.808 6.564 32.761 hybrid contribution 1.716 -1.627 -0.595 2.439 sum -30.154 -5.435 5.969 31.216 Atomic orbital electron populations 1.21527 0.91165 1.03594 1.03008 1.23401 1.00941 0.93474 1.05560 1.86818 1.05414 1.15467 1.98216 1.22980 0.92405 1.00253 1.05680 1.21349 0.88454 0.97742 1.07827 1.21032 0.89999 0.83760 0.74250 1.90724 1.77755 1.26512 1.51131 1.45162 1.04113 1.10166 1.74022 1.21550 0.79804 0.96282 1.01849 0.86877 1.23955 0.96324 1.03674 0.93322 0.83911 1.22719 0.90212 0.98049 0.95977 1.66288 1.01514 1.51325 1.03638 1.21912 0.91216 0.95335 1.00355 1.20706 0.83241 0.87190 0.85837 1.90476 1.76628 1.27632 1.55293 1.41929 1.11966 1.25030 1.42377 1.19663 0.94961 1.08046 1.23572 0.90324 1.26023 0.98570 0.97145 0.99466 1.69674 1.20628 1.21552 1.44413 0.84935 0.77586 0.77877 0.77982 1.19606 1.19570 1.19767 1.23154 0.90717 0.99574 0.92957 1.23744 0.95573 1.01381 0.97622 0.84883 0.91810 0.91890 0.89454 0.89647 0.89519 0.90288 0.90043 0.85530 0.85833 0.74059 0.87989 0.92969 0.87087 0.91407 0.77100 0.91344 0.93517 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.92 71.98 0.71 -0.27 16 2 C -0.09 -0.84 6.66 71.98 0.48 -0.36 16 3 S -0.29 -3.72 21.74 -56.49 -1.23 -4.95 16 4 C -0.06 -0.87 5.23 71.98 0.38 -0.49 16 5 C -0.11 -1.15 5.71 29.85 0.17 -0.98 16 6 C 0.52 8.91 7.83 87.65 0.69 9.59 16 7 O -0.58 -15.42 15.55 -3.04 -0.05 -15.47 16 8 N -0.68 -9.64 5.56 -442.52 -2.46 -12.10 16 9 C 0.11 2.22 5.97 44.99 0.27 2.49 16 10 H 0.11 2.81 7.40 -2.39 -0.02 2.79 16 11 C -0.15 -2.96 7.05 -9.94 -0.07 -3.03 16 12 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 13 C 0.06 1.37 6.27 86.45 0.54 1.91 16 14 N -0.50 -16.46 5.02 -876.08 -4.40 -20.86 16 15 C 0.04 1.55 5.33 85.55 0.46 2.01 16 16 C 0.44 21.55 7.63 87.65 0.67 22.22 16 17 O -0.61 -34.53 14.85 -3.06 -0.05 -34.57 16 18 N -0.58 -30.08 5.29 -306.99 -1.62 -31.70 16 19 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 22 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 23 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.06 1.98 5.91 85.75 0.51 2.49 16 28 C -0.16 -3.63 6.95 -9.95 -0.07 -3.70 16 29 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.42 3.10 8.83 -92.70 -0.82 2.28 16 40 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.11 3.47 8.08 -2.38 -0.02 3.45 16 43 H 0.07 2.20 7.85 -2.38 -0.02 2.18 16 44 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.39 16 46 H 0.05 1.45 7.88 -2.39 -0.02 1.43 16 47 H 0.07 2.64 7.32 -2.39 -0.02 2.62 16 Total: -1.00 -74.74 403.90 -2.05 -76.79 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.57 Total: 34.17 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.01 Total: 13.33 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -8.20 Total: -114.71 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.23 Total: -4.95 kcal Total: -74.74 -2.05 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113942326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.530 kcal (2) G-P(sol) polarization free energy of solvation -74.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds