Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 103.00088 * 2 1 4 4 H 1.08997 * 109.47007 * 55.00083 * 3 2 1 5 5 C 1.53002 * 109.47145 * 295.00344 * 3 2 1 6 6 C 1.52993 * 109.46976 * 175.00188 * 3 2 1 7 7 C 1.50705 * 109.47050 * 294.99909 * 6 3 2 8 8 O 1.21275 * 120.00180 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99913 * 180.02562 * 7 6 3 10 10 C 1.46496 * 119.99892 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.51520 * 9.58127 * 10 9 7 12 12 C 1.57168 * 116.87974 * 223.10160 * 10 9 7 13 13 H 1.08992 * 120.63500 * 3.40615 * 12 10 9 14 14 C 1.54378 * 118.11802 * 161.39295 * 12 10 9 15 15 N 1.48560 * 104.69549 * 86.11811 * 14 12 10 16 16 C 1.46905 * 110.99577 * 200.89794 * 15 14 12 17 17 C 1.50698 * 109.47165 * 169.99909 * 16 15 14 18 18 O 1.21299 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00035 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00133 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47254 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.47320 * 210.00407 * 24 22 20 27 27 H 1.48499 * 109.47163 * 330.00273 * 24 22 20 28 28 C 1.48555 * 104.22165 * 320.45136 * 15 14 12 29 29 C 1.53001 * 117.44459 * 154.99798 * 10 9 7 30 30 H 1.09000 * 119.52419 * 354.31045 * 29 10 9 31 31 H 1.09001 * 109.47047 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47505 * 59.99922 * 1 2 3 33 33 H 1.08998 * 109.47447 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46927 * 300.00093 * 5 3 2 35 35 H 1.09002 * 109.47264 * 59.99939 * 5 3 2 36 36 H 1.08994 * 109.46841 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47404 * 175.00099 * 6 3 2 38 38 H 1.08998 * 109.47699 * 55.00046 * 6 3 2 39 39 H 0.97001 * 120.00223 * 359.97438 * 9 7 6 40 40 H 1.09002 * 110.41432 * 327.27728 * 14 12 10 41 41 H 1.09002 * 110.41130 * 204.95513 * 14 12 10 42 42 H 1.09000 * 109.47225 * 289.99666 * 16 15 14 43 43 H 1.08997 * 109.47331 * 50.00020 * 16 15 14 44 44 H 0.96997 * 119.99533 * 359.97438 * 19 17 16 45 45 H 0.96992 * 119.99972 * 179.97438 * 23 22 20 46 46 H 1.09005 * 110.41154 * 158.26271 * 28 15 14 47 47 H 1.08995 * 110.41948 * 280.70356 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7369 1.9411 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3842 0.9665 2.2459 9 7 5.4965 1.4787 1.8017 10 6 5.9389 0.9783 3.1055 11 1 5.1881 0.4349 3.6792 12 6 6.9875 1.8529 3.8838 13 1 7.3162 2.8123 3.4844 14 6 7.1497 1.6161 5.4007 15 7 8.1335 0.5079 5.5060 16 6 8.0335 -0.1627 6.8092 17 6 8.8620 -1.4213 6.7914 18 8 9.4758 -1.7293 5.7915 19 7 8.9210 -2.2049 7.8864 20 6 9.6751 -3.3497 7.8703 21 1 10.2223 -3.6235 6.9803 22 6 9.7363 -4.1572 8.9994 23 7 9.0710 -3.8239 10.0825 24 14 10.7633 -5.7175 8.9773 25 1 12.1437 -5.4079 9.4284 26 1 10.1581 -6.7215 9.8888 27 1 10.8045 -6.2634 7.5969 28 6 7.7629 -0.4152 4.4025 29 6 7.3915 0.5135 3.2266 30 1 8.0200 0.4777 2.3368 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2353 1.9150 -2.1492 35 1 0.6635 2.2779 -1.3969 36 1 1.9884 3.4635 -1.3075 37 1 3.9903 2.9975 0.0366 38 1 4.2339 1.3804 -0.6659 39 1 6.1427 1.8466 1.1787 40 1 6.1979 1.3229 5.8436 41 1 7.5339 2.5130 5.8865 42 1 8.4014 0.5034 7.5897 43 1 6.9923 -0.4159 7.0087 44 1 8.4304 -1.9584 8.6861 45 1 9.1134 -4.3878 10.8705 46 1 8.6098 -1.0471 4.1350 47 1 6.9072 -1.0263 4.6892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114156656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -28.013550 kcal Electronic energy + Delta-G solvation = -26680.135615 eV Core-core repulsion = 22797.452463 eV Total energy + Delta-G solvation = -3882.683152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33768 -39.34985 -37.88431 -35.23488 -34.80023 -33.88497 -32.49094 -31.22224 -29.59406 -28.37336 -28.15571 -27.26180 -24.69032 -23.17143 -22.03025 -20.95493 -20.49270 -20.16122 -19.12275 -17.82220 -17.39055 -17.04552 -16.83571 -15.84195 -15.69254 -15.14529 -15.01866 -14.60929 -14.52917 -14.50536 -14.01782 -13.81407 -13.70619 -13.46995 -13.40816 -13.14180 -12.85764 -12.74112 -12.50972 -12.27064 -11.99459 -11.83545 -11.81180 -11.66427 -11.53308 -11.25250 -11.19714 -10.95470 -10.77713 -10.38153 -10.21682 -10.14783 -10.04564 -9.95531 -9.48550 -8.81089 -8.37973 -8.01971 -7.91289 -7.73465 -6.40994 -3.81841 1.40947 2.29997 2.37754 2.73815 3.18790 3.27527 3.33311 3.61319 3.89918 4.07410 4.12887 4.21193 4.30792 4.60781 4.70413 4.72861 4.74069 4.82156 4.87949 4.88242 4.96050 5.04725 5.05601 5.14804 5.24697 5.26848 5.34766 5.39169 5.45951 5.61932 5.63123 5.75342 5.80009 5.81717 5.95538 6.10921 6.16683 6.27407 6.38257 6.65309 7.15798 7.24749 7.27491 7.56127 8.01362 8.06523 8.61942 9.18403 9.54282 10.05740 10.76667 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.001861 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.495983 B =15041.217221 C =15969.888921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.237 6.237 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.123 4.123 7 C 0.510 3.490 8 O -0.512 6.512 9 N -0.701 5.701 10 C 0.106 3.894 11 H 0.136 0.864 12 C -0.175 4.175 13 H 0.117 0.883 14 C 0.059 3.941 15 N -0.487 5.487 16 C 0.034 3.966 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.065 3.935 29 C -0.159 4.159 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.122 0.878 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 15.958 -20.136 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.011 6.011 3 C -0.176 4.176 4 H 0.112 0.888 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.296 3.704 8 O -0.386 6.386 9 N -0.351 5.351 10 C -0.001 4.001 11 H 0.153 0.847 12 C -0.195 4.195 13 H 0.135 0.865 14 C -0.069 4.069 15 N -0.211 5.211 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.466 6.466 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.063 4.063 29 C -0.180 4.180 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.235 0.765 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.140 0.860 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.848 14.597 -20.070 28.419 hybrid contribution -1.059 0.370 0.483 1.222 sum -14.907 14.967 -19.586 28.808 Atomic orbital electron populations 1.23385 0.94894 1.06378 1.04588 1.87053 1.06684 1.09645 1.97713 1.22871 0.97555 0.95589 1.01551 0.88753 1.22111 1.01672 1.00880 0.96041 1.21517 0.94895 1.03723 0.96240 1.20496 0.82031 0.78862 0.88995 1.90779 1.52486 1.43651 1.51668 1.45281 1.08490 1.63818 1.17497 1.22502 0.92299 0.99668 0.85596 0.84684 1.24612 1.04602 0.95941 0.94356 0.86470 1.22670 0.94521 0.96378 0.93326 1.65412 1.45639 1.07947 1.02131 1.22099 0.98948 0.96216 0.92547 1.19691 0.86702 0.85826 0.85008 1.90445 1.48929 1.74378 1.32864 1.41847 1.43642 1.21423 1.12821 1.19702 1.24473 0.98495 1.00181 0.87863 1.25274 0.97942 0.99799 0.94951 1.69613 1.41971 1.39441 1.03184 0.85847 0.79383 0.80680 0.78319 1.20394 1.20943 1.19415 1.22869 1.01395 0.93735 0.88252 1.24103 0.95963 0.97152 1.00750 0.86710 0.90518 0.90821 0.88222 0.91151 0.92146 0.91548 0.87437 0.87887 0.76534 0.93683 0.89642 0.88997 0.93171 0.77421 0.91853 0.86025 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.45 101.05 1.06 0.17 16 2 S -0.24 -2.40 20.24 -107.50 -2.18 -4.57 16 3 C -0.05 -0.34 2.44 -26.73 -0.07 -0.41 16 4 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 5 C -0.15 -0.71 9.10 37.16 0.34 -0.37 16 6 C -0.12 -0.79 5.17 -27.88 -0.14 -0.94 16 7 C 0.51 5.29 7.54 -10.98 -0.08 5.21 16 8 O -0.51 -7.44 14.36 5.56 0.08 -7.36 16 9 N -0.70 -6.50 5.57 -51.62 -0.29 -6.79 16 10 C 0.11 1.27 6.19 -65.67 -0.41 0.86 16 11 H 0.14 1.94 7.40 -51.93 -0.38 1.56 16 12 C -0.17 -2.04 7.25 -86.81 -0.63 -2.67 16 13 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.06 0.79 6.31 -2.18 -0.01 0.78 16 15 N -0.49 -8.36 5.34 -231.41 -1.23 -9.59 16 16 C 0.03 0.62 5.55 -4.97 -0.03 0.59 16 17 C 0.44 10.50 7.50 -10.98 -0.08 10.42 16 18 O -0.58 -15.47 13.24 5.54 0.07 -15.40 16 19 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.06 1.11 5.11 -2.19 -0.01 1.10 16 29 C -0.16 -2.08 6.91 -89.07 -0.62 -2.70 16 30 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.40 7.14 -51.92 -0.37 0.03 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.28 6.92 -51.93 -0.36 -0.08 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 2.50 8.83 -40.82 -0.36 2.14 16 40 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 46 H 0.12 2.48 6.05 -51.93 -0.31 2.16 16 47 H 0.04 0.71 7.99 -51.93 -0.41 0.30 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -33.72 395.43 -10.36 -44.08 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.49 Total: 11.83 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.92 Total: 4.03 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.86 Total: -54.75 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.15 Total: -22.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.18 Total: -4.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.72 -10.36 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114156656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.064 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds