Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99656 * 2 1 4 4 C 1.50701 * 109.46675 * 180.02562 * 3 2 1 5 5 N 1.29035 * 124.91483 * 90.00222 * 4 3 2 6 6 C 1.31781 * 117.11878 * 179.97438 * 5 4 3 7 7 C 1.50710 * 122.74273 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47340 * 305.02708 * 7 6 5 9 9 O 1.21288 * 119.99800 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 C 1.53001 * 109.46997 * 294.99685 * 14 11 10 16 16 H 1.09005 * 109.46462 * 55.00734 * 15 14 11 17 17 C 1.53005 * 109.46980 * 174.99708 * 15 14 11 18 18 N 1.46490 * 109.47637 * 295.00250 * 15 14 11 19 19 C 1.36931 * 120.00285 * 154.99540 * 18 15 14 20 20 H 1.07993 * 120.00221 * 0.02562 * 19 18 15 21 21 C 1.38821 * 120.00059 * 179.97438 * 19 18 15 22 22 N 1.31615 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99945 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47149 * 90.00107 * 23 21 19 25 25 H 1.48500 * 109.47375 * 210.00226 * 23 21 19 26 26 H 1.48503 * 109.47188 * 330.00260 * 23 21 19 27 27 C 1.33631 * 114.50644 * 0.23480 * 6 5 4 28 28 S 1.70981 * 124.91930 * 269.99727 * 4 3 2 29 29 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47077 * 299.99556 * 1 2 3 31 31 H 1.08997 * 109.47436 * 60.00193 * 1 2 3 32 32 H 1.08997 * 109.47258 * 60.00489 * 3 2 1 33 33 H 1.09002 * 109.46887 * 299.99997 * 3 2 1 34 34 H 1.09000 * 109.46745 * 185.02083 * 7 6 5 35 35 H 1.08995 * 109.46780 * 65.02707 * 7 6 5 36 36 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 39 39 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 40 40 H 1.08993 * 109.47322 * 54.99986 * 14 11 10 41 41 H 1.09002 * 109.47196 * 175.00109 * 14 11 10 42 42 H 1.08994 * 109.46862 * 179.97438 * 17 15 14 43 43 H 1.08993 * 109.47399 * 300.00897 * 17 15 14 44 44 H 1.09000 * 109.46373 * 60.00502 * 17 15 14 45 45 H 0.97006 * 119.99783 * 335.00694 * 18 15 14 46 46 H 0.96996 * 119.99884 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.04071 * 179.77016 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2483 1.1284 -1.0590 6 6 5.5500 1.0257 -0.8808 7 6 6.5260 0.9481 -2.0266 8 6 6.1417 -0.1891 -2.9377 9 8 5.1711 -0.8699 -2.6816 10 7 6.8766 -0.4496 -4.0370 11 6 6.5033 -1.5555 -4.9225 12 1 5.4174 -1.6430 -4.9566 13 6 7.1036 -2.8588 -4.3914 14 6 7.0376 -1.2842 -6.3302 15 6 6.3440 -0.0498 -6.9099 16 1 6.4695 0.7912 -6.2279 17 6 6.9655 0.2952 -8.2648 18 7 4.9164 -0.3285 -7.0842 19 6 4.0134 0.7008 -7.0886 20 1 4.3536 1.7181 -6.9638 21 6 2.6607 0.4367 -7.2543 22 7 2.2461 -0.8031 -7.4068 23 14 1.4289 1.8410 -7.2609 24 1 1.2486 2.3348 -8.6497 25 1 0.1267 1.3597 -6.7337 26 1 1.9321 2.9449 -6.4044 27 6 5.9332 0.9906 0.3989 28 16 4.4887 1.1090 1.4009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 7.5300 0.7789 -1.6377 35 1 6.5057 1.8839 -2.5851 36 1 7.6529 0.0947 -4.2416 37 1 6.8256 -3.6817 -5.0500 38 1 8.1895 -2.7713 -4.3573 39 1 6.7230 -3.0520 -3.3885 40 1 8.1123 -1.1087 -6.2834 41 1 6.8377 -2.1460 -6.9670 42 1 6.4711 1.1743 -8.6780 43 1 8.0277 0.5025 -8.1351 44 1 6.8401 -0.5458 -8.9467 45 1 4.6108 -1.2423 -7.1965 46 1 1.3009 -0.9876 -7.5222 47 1 6.9489 0.9061 0.7559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135894134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = -27.830866 kcal Electronic energy + Delta-G solvation = -28023.202105 eV Core-core repulsion = 24140.526875 eV Total energy + Delta-G solvation = -3882.675230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.23727 -39.00781 -37.79453 -36.64995 -34.30263 -32.68743 -32.01525 -30.73578 -28.91492 -28.49487 -27.74749 -26.23869 -26.03959 -23.54922 -23.05279 -21.32530 -20.22867 -19.69531 -19.59775 -17.93219 -17.16667 -16.70309 -16.54054 -15.96163 -15.74385 -15.66088 -14.87174 -14.65095 -14.40526 -14.03263 -13.84949 -13.59471 -13.56712 -13.21806 -12.91046 -12.68065 -12.58033 -12.26745 -12.18408 -12.00417 -11.90872 -11.66019 -11.54882 -11.47421 -11.35741 -10.92848 -10.75737 -10.52155 -10.32790 -10.14443 -9.83992 -9.80897 -9.53455 -9.52464 -9.46342 -9.29374 -8.79232 -8.77480 -8.53390 -6.82228 -5.63427 -2.90761 0.61519 1.32447 1.67508 2.70416 3.14344 3.51302 3.56294 3.58241 3.64674 3.72353 4.22478 4.70898 4.74066 4.91248 5.02237 5.11527 5.16479 5.23639 5.28356 5.31447 5.39335 5.42126 5.52206 5.58099 5.64607 5.69844 5.71588 5.77987 5.98021 6.03181 6.07454 6.09493 6.21851 6.36629 6.44339 6.52684 6.65288 6.83534 6.92244 6.97542 7.05337 7.14998 7.81363 7.84155 7.96516 8.54907 8.75861 9.66288 10.23872 10.57795 11.59575 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.004058 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.139910 B = 6897.501265 C = 9114.859397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.140 3.860 4 C 0.049 3.951 5 N -0.417 5.417 6 C 0.094 3.906 7 C -0.069 4.069 8 C 0.515 3.485 9 O -0.511 6.511 10 N -0.720 5.720 11 C 0.145 3.855 12 H 0.104 0.896 13 C -0.160 4.160 14 C -0.130 4.130 15 C 0.172 3.828 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.231 4.231 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.256 4.256 28 S 0.121 5.879 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.392 0.608 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.045 0.955 45 H 0.382 0.618 46 H 0.253 0.747 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 3.687 17.522 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.060 3.940 4 C -0.230 4.230 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.112 4.112 8 C 0.299 3.701 9 O -0.384 6.384 10 N -0.372 5.372 11 C 0.041 3.959 12 H 0.122 0.878 13 C -0.218 4.218 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.064 0.936 17 C -0.226 4.226 18 N -0.361 5.361 19 C -0.363 4.363 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.395 4.395 28 S 0.375 5.625 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.700 3.202 18.316 20.528 hybrid contribution -0.010 0.876 -1.001 1.330 sum 8.690 4.078 17.316 19.798 Atomic orbital electron populations 1.22797 0.80144 1.03339 1.00150 1.88002 1.20163 1.26037 1.95449 1.20768 0.84734 0.86286 1.02212 1.26515 1.00295 1.05401 0.90781 1.65984 1.04307 1.11898 1.30966 1.19606 0.89980 1.01272 0.93111 1.20264 0.97164 1.00160 0.93570 1.20085 0.83180 0.85093 0.81712 1.90786 1.25759 1.49527 1.72378 1.45909 1.31218 1.34686 1.25400 1.20979 1.02380 0.84519 0.88000 0.87762 1.22175 1.00049 0.97891 1.01694 1.22157 0.99032 1.00544 0.95130 1.20209 0.85747 0.94364 0.93461 0.93646 1.22464 0.97999 1.01538 1.00555 1.42384 0.99660 1.07142 1.86936 1.19132 0.87606 0.88224 1.41308 0.91596 1.24667 0.96918 0.96049 1.03057 1.69643 1.14358 1.17165 1.56824 0.86262 0.81454 0.81690 0.77271 1.21984 1.21879 1.20892 1.26800 1.03252 1.13724 0.95723 1.83714 0.98102 1.67659 1.12986 0.89149 0.94028 0.93384 0.91186 0.89861 0.87629 0.87154 0.77495 0.91907 0.93269 0.92673 0.92167 0.90797 0.92965 0.94771 0.93593 0.78377 0.93694 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.83 10.69 -35.23 -0.38 -6.21 16 3 C 0.14 1.88 6.51 36.01 0.23 2.12 16 4 C 0.05 0.75 7.02 -13.45 -0.09 0.65 16 5 N -0.42 -7.53 9.68 -8.05 -0.08 -7.60 16 6 C 0.09 1.40 5.64 -84.22 -0.47 0.92 16 7 C -0.07 -0.88 6.19 -29.03 -0.18 -1.06 16 8 C 0.52 8.89 7.76 -10.99 -0.09 8.80 16 9 O -0.51 -11.64 15.11 5.55 0.08 -11.55 16 10 N -0.72 -10.77 4.45 -53.80 -0.24 -11.01 16 11 C 0.15 2.46 2.52 -67.93 -0.17 2.29 16 12 H 0.10 2.36 7.05 -51.93 -0.37 2.00 16 13 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 14 C -0.13 -2.05 4.29 -26.73 -0.11 -2.16 16 15 C 0.17 3.35 2.84 -67.93 -0.19 3.15 16 16 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 17 C -0.17 -2.95 9.49 37.16 0.35 -2.60 16 18 N -0.72 -18.22 4.49 -53.43 -0.24 -18.46 16 19 C -0.23 -6.62 9.93 -15.06 -0.15 -6.77 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 23 Si 0.90 23.60 29.55 -169.99 -5.02 18.58 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 C -0.26 -2.99 11.07 29.12 0.32 -2.67 16 28 S 0.12 1.39 23.18 -107.50 -2.49 -1.10 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.11 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.39 4.46 8.60 -40.82 -0.35 4.11 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.38 10.42 7.80 -40.82 -0.32 10.10 16 46 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 408.00 15.07 6.15 6.15 Total: -1.00 -38.28 408.00 -8.41 -46.69 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.73 Total: 11.32 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 0.82 Total: 1.78 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 0.17 Total: -65.65 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.29 Total: -17.76 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.28 -8.41 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.862 kcal (2) G-P(sol) polarization free energy of solvation -38.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds