Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99656 * 2 1 4 4 C 1.50701 * 109.46675 * 180.02562 * 3 2 1 5 5 N 1.29035 * 124.91483 * 90.00222 * 4 3 2 6 6 C 1.31781 * 117.11878 * 179.97438 * 5 4 3 7 7 C 1.50710 * 122.74273 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47340 * 305.02708 * 7 6 5 9 9 O 1.21288 * 119.99800 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 C 1.53001 * 109.46997 * 294.99685 * 14 11 10 16 16 H 1.09005 * 109.46462 * 55.00734 * 15 14 11 17 17 C 1.53005 * 109.46980 * 174.99708 * 15 14 11 18 18 N 1.46490 * 109.47637 * 295.00250 * 15 14 11 19 19 C 1.36931 * 120.00285 * 154.99540 * 18 15 14 20 20 H 1.07993 * 120.00221 * 0.02562 * 19 18 15 21 21 C 1.38821 * 120.00059 * 179.97438 * 19 18 15 22 22 N 1.31615 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99945 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47149 * 90.00107 * 23 21 19 25 25 H 1.48500 * 109.47375 * 210.00226 * 23 21 19 26 26 H 1.48503 * 109.47188 * 330.00260 * 23 21 19 27 27 C 1.33631 * 114.50644 * 0.23480 * 6 5 4 28 28 S 1.70981 * 124.91930 * 269.99727 * 4 3 2 29 29 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47077 * 299.99556 * 1 2 3 31 31 H 1.08997 * 109.47436 * 60.00193 * 1 2 3 32 32 H 1.08997 * 109.47258 * 60.00489 * 3 2 1 33 33 H 1.09002 * 109.46887 * 299.99997 * 3 2 1 34 34 H 1.09000 * 109.46745 * 185.02083 * 7 6 5 35 35 H 1.08995 * 109.46780 * 65.02707 * 7 6 5 36 36 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 39 39 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 40 40 H 1.08993 * 109.47322 * 54.99986 * 14 11 10 41 41 H 1.09002 * 109.47196 * 175.00109 * 14 11 10 42 42 H 1.08994 * 109.46862 * 179.97438 * 17 15 14 43 43 H 1.08993 * 109.47399 * 300.00897 * 17 15 14 44 44 H 1.09000 * 109.46373 * 60.00502 * 17 15 14 45 45 H 0.97006 * 119.99783 * 335.00694 * 18 15 14 46 46 H 0.96996 * 119.99884 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.04071 * 179.77016 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2483 1.1284 -1.0590 6 6 5.5500 1.0257 -0.8808 7 6 6.5260 0.9481 -2.0266 8 6 6.1417 -0.1891 -2.9377 9 8 5.1711 -0.8699 -2.6816 10 7 6.8766 -0.4496 -4.0370 11 6 6.5033 -1.5555 -4.9225 12 1 5.4174 -1.6430 -4.9566 13 6 7.1036 -2.8588 -4.3914 14 6 7.0376 -1.2842 -6.3302 15 6 6.3440 -0.0498 -6.9099 16 1 6.4695 0.7912 -6.2279 17 6 6.9655 0.2952 -8.2648 18 7 4.9164 -0.3285 -7.0842 19 6 4.0134 0.7008 -7.0886 20 1 4.3536 1.7181 -6.9638 21 6 2.6607 0.4367 -7.2543 22 7 2.2461 -0.8031 -7.4068 23 14 1.4289 1.8410 -7.2609 24 1 1.2486 2.3348 -8.6497 25 1 0.1267 1.3597 -6.7337 26 1 1.9321 2.9449 -6.4044 27 6 5.9332 0.9906 0.3989 28 16 4.4887 1.1090 1.4009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 7.5300 0.7789 -1.6377 35 1 6.5057 1.8839 -2.5851 36 1 7.6529 0.0947 -4.2416 37 1 6.8256 -3.6817 -5.0500 38 1 8.1895 -2.7713 -4.3573 39 1 6.7230 -3.0520 -3.3885 40 1 8.1123 -1.1087 -6.2834 41 1 6.8377 -2.1460 -6.9670 42 1 6.4711 1.1743 -8.6780 43 1 8.0277 0.5025 -8.1351 44 1 6.8401 -0.5458 -8.9467 45 1 4.6108 -1.2423 -7.1965 46 1 1.3009 -0.9876 -7.5222 47 1 6.9489 0.9061 0.7559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135894134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -57.637842 kcal Electronic energy + Delta-G solvation = -28024.494632 eV Core-core repulsion = 24140.526875 eV Total energy + Delta-G solvation = -3883.967757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.34812 -40.26096 -38.84971 -38.19498 -35.98080 -34.04443 -33.66256 -32.07732 -30.46826 -29.88548 -28.73029 -27.57578 -26.99890 -25.67121 -24.14250 -22.60204 -21.62075 -21.12874 -20.69718 -19.33307 -18.90881 -17.91987 -17.63014 -17.11439 -16.95421 -16.68059 -16.58634 -16.04363 -15.71456 -15.53448 -15.30620 -15.07144 -14.66541 -14.52838 -14.28788 -14.15317 -13.66417 -13.58842 -13.35893 -13.23849 -13.18151 -13.05376 -12.90801 -12.78662 -12.67153 -12.45121 -12.33732 -12.22475 -12.20603 -11.80639 -11.54802 -11.40213 -10.91679 -10.84698 -10.77051 -10.54541 -10.33900 -9.88644 -9.73466 -8.94383 -7.92604 -5.17223 -0.35683 0.40502 0.71144 1.38202 1.42050 1.48538 1.65817 1.86331 2.49059 2.55243 2.77408 3.26808 3.42352 3.74073 3.84516 3.98157 4.01356 4.12566 4.16119 4.23489 4.29513 4.37575 4.41593 4.43762 4.48654 4.51467 4.57077 4.71277 4.75831 4.77005 4.80866 4.84582 4.96842 5.04847 5.11040 5.12052 5.26552 5.37271 5.45537 5.52625 5.65079 5.75811 6.01968 6.30896 6.77590 6.88574 7.36310 7.54122 8.17634 8.36217 9.31599 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.004058 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.139910 B = 6897.501265 C = 9114.859397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.136 3.864 4 C 0.007 3.993 5 N -0.476 5.476 6 C 0.054 3.946 7 C -0.059 4.059 8 C 0.505 3.495 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.148 3.852 12 H 0.036 0.964 13 C -0.148 4.148 14 C -0.116 4.116 15 C 0.164 3.836 16 H 0.044 0.956 17 C -0.156 4.156 18 N -0.732 5.732 19 C -0.222 4.222 20 H 0.069 0.931 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.959 3.041 24 H -0.282 1.282 25 H -0.301 1.301 26 H -0.275 1.275 27 C -0.239 4.239 28 S 0.187 5.813 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.119 0.881 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.368 0.632 46 H 0.246 0.754 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.493 5.025 19.119 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.057 3.943 4 C -0.270 4.270 5 N -0.192 5.192 6 C -0.079 4.079 7 C -0.101 4.101 8 C 0.291 3.709 9 O -0.456 6.456 10 N -0.359 5.359 11 C 0.043 3.957 12 H 0.055 0.945 13 C -0.206 4.206 14 C -0.154 4.154 15 C 0.056 3.944 16 H 0.062 0.938 17 C -0.215 4.215 18 N -0.372 5.372 19 C -0.355 4.355 20 H 0.087 0.913 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.228 1.228 26 H -0.201 1.201 27 C -0.378 4.378 28 S 0.441 5.559 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.200 0.800 46 H 0.055 0.945 47 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.363 4.600 19.895 23.871 hybrid contribution -1.014 0.458 -1.415 1.800 sum 11.349 5.059 18.480 22.269 Atomic orbital electron populations 1.22982 0.78476 1.04089 1.01387 1.87938 1.22236 1.27559 1.95696 1.20944 0.84516 0.85681 1.03169 1.26807 1.01247 1.06666 0.92329 1.65974 1.06336 1.13493 1.33430 1.19963 0.89491 1.03458 0.94975 1.20370 0.99155 0.98146 0.92467 1.21002 0.82170 0.85445 0.82238 1.90761 1.28670 1.52142 1.74042 1.45783 1.31499 1.34268 1.24373 1.20729 0.98729 0.86645 0.89590 0.94534 1.22053 1.02004 0.96382 1.00193 1.22062 1.01242 0.98527 0.93601 1.20533 0.82993 0.96161 0.94733 0.93837 1.22303 1.00336 1.00246 0.98637 1.42612 1.02054 1.05678 1.86870 1.19486 0.88338 0.89085 1.38561 0.91314 1.25423 0.98932 0.98162 1.04581 1.69802 1.13985 1.19060 1.59308 0.85326 0.78848 0.79231 0.77622 1.20870 1.22805 1.20074 1.27347 1.05289 1.10459 0.94703 1.83347 0.96599 1.65699 1.10209 0.88735 0.90749 0.94114 0.87328 0.91717 0.82443 0.86266 0.74943 0.91725 0.89505 0.94834 0.87174 0.91014 0.95245 0.90232 0.94069 0.80032 0.94511 0.76247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -13.42 10.69 -148.98 -1.59 -15.01 16 3 C 0.14 3.81 6.51 71.24 0.46 4.28 16 4 C 0.01 0.21 7.02 88.52 0.62 0.83 16 5 N -0.48 -17.75 9.68 -179.39 -1.74 -19.49 16 6 C 0.05 1.56 5.64 41.52 0.23 1.79 16 7 C -0.06 -1.41 6.19 29.10 0.18 -1.23 16 8 C 0.50 17.46 7.76 87.66 0.68 18.14 16 9 O -0.58 -27.81 15.11 -3.05 -0.05 -27.86 16 10 N -0.71 -20.25 4.45 -442.52 -1.97 -22.21 16 11 C 0.15 5.00 2.52 44.99 0.11 5.11 16 12 H 0.04 1.76 7.05 -2.39 -0.02 1.74 16 13 C -0.15 -4.14 9.48 71.98 0.68 -3.45 16 14 C -0.12 -3.40 4.29 30.59 0.13 -3.27 16 15 C 0.16 6.18 2.84 45.00 0.13 6.31 16 16 H 0.04 1.66 7.56 -2.38 -0.02 1.64 16 17 C -0.16 -5.18 9.49 71.98 0.68 -4.50 16 18 N -0.73 -38.07 4.49 -322.95 -1.45 -39.52 16 19 C -0.22 -13.05 9.93 84.04 0.83 -12.22 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 22 N -0.97 -63.89 13.06 21.65 0.28 -63.61 16 23 Si 0.96 50.17 29.55 68.60 2.03 52.20 16 24 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.30 -16.02 7.11 99.48 0.71 -15.32 16 26 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 27 C -0.24 -4.91 11.07 66.77 0.74 -4.17 16 28 S 0.19 3.95 23.18 -56.49 -1.31 2.64 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.16 1.92 8.03 -2.39 -0.02 1.91 16 35 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.41 8.05 8.60 -92.71 -0.80 7.25 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.37 21.02 7.80 -92.70 -0.72 20.29 16 46 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -92.52 408.00 0.87 -91.65 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.54 Total: 36.16 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 7.21 Total: 5.05 kcal Atomic # 7 Polarization: -139.96 SS G_CDS: -4.87 Total: -144.83 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.64 Total: -42.87 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.03 Total: 52.20 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -92.52 0.87 -91.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.012 kcal (2) G-P(sol) polarization free energy of solvation -92.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds