Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 102.99980 * 2 1 4 4 H 1.08999 * 109.47112 * 55.00386 * 3 2 1 5 5 C 1.52998 * 109.47256 * 295.00247 * 3 2 1 6 6 C 1.50704 * 109.47021 * 175.00169 * 3 2 1 7 7 O 1.21279 * 120.00102 * 24.99562 * 6 3 2 8 8 N 1.34772 * 119.99767 * 204.99998 * 6 3 2 9 9 C 1.47891 * 134.34209 * 179.97438 * 8 6 3 10 10 C 1.52387 * 85.59519 * 156.49014 * 9 8 6 11 11 C 1.47893 * 134.34714 * 359.97272 * 8 6 3 12 12 C 1.53639 * 116.37745 * 141.34379 * 10 9 8 13 13 C 1.54601 * 102.81225 * 95.34710 * 12 10 9 14 14 N 1.47558 * 107.32834 * 20.84345 * 13 12 10 15 15 C 1.46899 * 111.00287 * 123.22138 * 14 13 12 16 16 C 1.50698 * 109.46987 * 69.87036 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.48145 * 108.68777 * 0.86569 * 14 13 12 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46863 * 300.00177 * 1 2 3 30 30 H 1.08997 * 109.47297 * 60.00015 * 1 2 3 31 31 H 1.08993 * 109.47253 * 59.99750 * 5 3 2 32 32 H 1.09001 * 109.47143 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.46701 * 299.99903 * 5 3 2 34 34 H 1.08996 * 113.85223 * 42.32350 * 9 8 6 35 35 H 1.08999 * 113.97353 * 270.67159 * 9 8 6 36 36 H 1.09000 * 113.85143 * 89.34623 * 11 8 6 37 37 H 1.08999 * 113.85191 * 317.67833 * 11 8 6 38 38 H 1.08997 * 110.74538 * 337.01632 * 12 10 9 39 39 H 1.09005 * 110.90204 * 213.74508 * 12 10 9 40 40 H 1.09001 * 109.86844 * 261.41168 * 13 12 10 41 41 H 1.09000 * 109.87238 * 140.27737 * 13 12 10 42 42 H 1.09003 * 109.46477 * 309.87526 * 15 14 13 43 43 H 1.08993 * 109.47002 * 189.87852 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.39866 * 96.34184 * 27 14 13 47 47 H 1.08997 * 110.40905 * 218.77337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7143 1.9385 0.1238 7 8 4.4585 1.0530 -0.2409 8 7 4.2216 3.0754 0.6398 9 6 5.5901 3.5708 0.9026 10 6 4.9736 4.9625 0.8311 11 6 3.6316 4.3242 1.1686 12 6 5.5081 5.9981 1.8323 13 6 6.5898 6.7398 1.0139 14 7 6.2931 6.5134 -0.4137 15 6 6.1296 7.7876 -1.1260 16 6 7.4637 8.4811 -1.2276 17 8 8.4534 7.9643 -0.7536 18 7 7.5572 9.6749 -1.8460 19 6 8.7699 10.3085 -1.9335 20 1 9.6510 9.8487 -1.5108 21 6 8.8653 11.5420 -2.5660 22 7 10.0276 12.1495 -2.6494 23 14 7.3411 12.3375 -3.2964 24 1 6.6893 13.1920 -2.2717 25 1 7.7285 13.1711 -4.4627 26 1 6.3939 11.2816 -3.7356 27 6 5.0690 5.6855 -0.5186 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.6636 2.2778 -1.3969 32 1 1.9884 3.4635 -1.3075 33 1 2.2354 1.9149 -2.1491 34 1 6.2968 3.3600 0.1000 35 1 5.9742 3.3089 1.8885 36 1 3.4151 4.2917 2.2364 37 1 2.8005 4.7049 0.5749 38 1 5.9496 5.5054 2.6986 39 1 4.7192 6.6842 2.1406 40 1 7.5752 6.3412 1.2553 41 1 6.5551 7.8066 1.2349 42 1 5.4310 8.4219 -0.5802 43 1 5.7418 7.5973 -2.1267 44 1 6.7657 10.0880 -2.2254 45 1 10.0943 13.0104 -3.0912 46 1 4.1948 6.3179 -0.6735 47 1 5.1662 4.9644 -1.3301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147034025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = -12.462233 kcal Electronic energy + Delta-G solvation = -27492.917052 eV Core-core repulsion = 23610.908256 eV Total energy + Delta-G solvation = -3882.008796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28639 -39.21998 -38.28287 -36.47224 -33.95055 -33.76413 -31.81799 -31.47051 -29.41618 -29.11872 -27.76175 -26.86743 -25.68204 -24.48464 -23.78709 -21.23688 -20.04383 -19.34337 -18.98180 -18.21589 -17.51784 -17.18232 -16.18609 -16.05021 -15.90920 -15.47362 -15.07842 -14.82918 -14.73903 -14.54803 -14.23572 -13.97339 -13.81525 -13.58871 -13.42095 -13.21378 -12.96229 -12.82130 -12.68171 -12.46725 -12.33297 -12.27806 -12.21759 -11.97775 -11.76606 -11.48838 -11.26419 -11.13103 -11.01039 -10.66683 -10.60836 -10.27786 -10.01643 -9.97872 -9.56223 -9.05595 -8.59126 -8.17897 -8.07724 -8.02450 -6.30983 -3.82328 1.00134 2.05853 2.34101 2.44446 3.01333 3.04907 3.13840 3.68715 3.74725 3.81866 4.09379 4.13509 4.19519 4.35432 4.47903 4.55152 4.64878 4.67909 4.69932 4.82373 4.89338 4.96252 5.02821 5.11264 5.19125 5.19577 5.25680 5.29893 5.41113 5.47012 5.50521 5.54823 5.57504 5.61559 5.66113 5.74202 5.83767 5.89128 6.01988 6.35047 7.08267 7.11228 7.30090 7.58524 7.78583 8.14585 8.60552 8.95715 9.42672 9.84057 10.82247 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.002020 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.303562 B =13861.340477 C =14391.867655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.191 6.191 3 C -0.087 4.087 4 H 0.103 0.897 5 C -0.141 4.141 6 C 0.556 3.444 7 O -0.518 6.518 8 N -0.641 5.641 9 C 0.132 3.868 10 C -0.103 4.103 11 C 0.114 3.886 12 C -0.129 4.129 13 C 0.057 3.943 14 N -0.504 5.504 15 C 0.038 3.962 16 C 0.453 3.547 17 O -0.557 6.557 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.069 3.931 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.052 0.948 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.307 -16.402 8.177 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.035 5.965 3 C -0.219 4.219 4 H 0.122 0.878 5 C -0.201 4.201 6 C 0.343 3.657 7 O -0.393 6.393 8 N -0.377 5.377 9 C 0.011 3.989 10 C -0.104 4.104 11 C -0.009 4.009 12 C -0.169 4.169 13 C -0.071 4.071 14 N -0.228 5.228 15 C -0.093 4.093 16 C 0.238 3.762 17 O -0.438 6.438 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.059 4.059 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.069 -18.377 7.898 29.785 hybrid contribution -2.789 2.435 -0.250 3.711 sum -24.859 -15.942 7.648 30.505 Atomic orbital electron populations 1.23551 0.95479 1.06757 1.04940 1.87483 1.05074 1.06081 1.97852 1.23262 0.97057 0.98182 1.03400 0.87844 1.21980 1.01829 1.01252 0.94990 1.19267 0.88525 0.80380 0.77569 1.90771 1.60298 1.39615 1.48573 1.50093 1.10243 1.15708 1.61684 1.22997 0.85163 0.88384 1.02402 1.22419 0.95469 0.94910 0.97612 1.23110 0.96954 0.81009 0.99809 1.22645 0.99158 0.97162 0.97889 1.22806 0.98886 0.99598 0.85813 1.63311 1.32367 1.15245 1.11903 1.22114 0.96831 0.90644 0.99752 1.19635 0.89990 0.82542 0.84044 1.90567 1.37836 1.65288 1.50068 1.42213 1.10089 1.18700 1.52336 1.19422 0.87091 1.01406 1.35280 0.86293 1.25036 0.96958 0.96537 0.97697 1.69621 1.23182 1.16288 1.43130 0.86675 0.82859 0.80029 0.79834 1.19721 1.20199 1.19528 1.22633 0.91877 0.95930 0.95460 0.87705 0.90556 0.90276 0.91266 0.91102 0.90389 0.88860 0.89240 0.88988 0.89752 0.90136 0.90786 0.89558 0.92390 0.93179 0.89368 0.79813 0.91649 0.93001 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 10.45 101.05 1.06 0.35 16 2 S -0.19 -1.82 21.10 -107.50 -2.27 -4.09 16 3 C -0.09 -0.72 2.96 -27.88 -0.08 -0.81 16 4 H 0.10 0.64 7.98 -51.92 -0.41 0.22 16 5 C -0.14 -0.94 9.08 37.16 0.34 -0.60 16 6 C 0.56 6.45 7.18 -10.99 -0.08 6.37 16 7 O -0.52 -8.33 16.86 5.56 0.09 -8.24 16 8 N -0.64 -6.11 3.62 -186.79 -0.68 -6.79 16 9 C 0.13 1.31 8.14 -3.59 -0.03 1.28 16 10 C -0.10 -0.88 0.99 -154.83 -0.15 -1.03 16 11 C 0.11 0.71 7.86 -3.58 -0.03 0.69 16 12 C -0.13 -1.13 6.35 -25.56 -0.16 -1.29 16 13 C 0.06 0.77 5.67 -2.62 -0.01 0.75 16 14 N -0.50 -7.42 4.86 -233.13 -1.13 -8.55 16 15 C 0.04 0.61 5.03 -4.98 -0.03 0.58 16 16 C 0.45 10.02 7.43 -10.99 -0.08 9.94 16 17 O -0.56 -14.62 15.12 5.55 0.08 -14.53 16 18 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 19 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 23 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 27 C 0.07 0.73 6.10 -2.93 -0.02 0.71 16 28 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.08 0.33 7.14 -51.93 -0.37 -0.04 16 31 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16 32 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.09 0.77 8.04 -51.93 -0.42 0.36 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 42 H 0.05 0.68 7.96 -51.93 -0.41 0.26 16 43 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.05 0.47 7.80 -51.93 -0.40 0.06 16 47 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -35.83 393.92 -9.09 -44.92 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.61 Total: 6.44 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 0.47 Total: 9.30 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -1.09 Total: -54.14 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.27 Total: -4.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.83 -9.09 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147034025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.454 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds