Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 102.99980 * 2 1 4 4 H 1.08999 * 109.47112 * 55.00386 * 3 2 1 5 5 C 1.52998 * 109.47256 * 295.00247 * 3 2 1 6 6 C 1.50704 * 109.47021 * 175.00169 * 3 2 1 7 7 O 1.21279 * 120.00102 * 24.99562 * 6 3 2 8 8 N 1.34772 * 119.99767 * 204.99998 * 6 3 2 9 9 C 1.47891 * 134.34209 * 179.97438 * 8 6 3 10 10 C 1.52387 * 85.59519 * 156.49014 * 9 8 6 11 11 C 1.47893 * 134.34714 * 359.97272 * 8 6 3 12 12 C 1.53639 * 116.37745 * 141.34379 * 10 9 8 13 13 C 1.54601 * 102.81225 * 95.34710 * 12 10 9 14 14 N 1.47558 * 107.32834 * 20.84345 * 13 12 10 15 15 C 1.46899 * 111.00287 * 123.22138 * 14 13 12 16 16 C 1.50698 * 109.46987 * 69.87036 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.48145 * 108.68777 * 0.86569 * 14 13 12 28 28 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46863 * 300.00177 * 1 2 3 30 30 H 1.08997 * 109.47297 * 60.00015 * 1 2 3 31 31 H 1.08993 * 109.47253 * 59.99750 * 5 3 2 32 32 H 1.09001 * 109.47143 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.46701 * 299.99903 * 5 3 2 34 34 H 1.08996 * 113.85223 * 42.32350 * 9 8 6 35 35 H 1.08999 * 113.97353 * 270.67159 * 9 8 6 36 36 H 1.09000 * 113.85143 * 89.34623 * 11 8 6 37 37 H 1.08999 * 113.85191 * 317.67833 * 11 8 6 38 38 H 1.08997 * 110.74538 * 337.01632 * 12 10 9 39 39 H 1.09005 * 110.90204 * 213.74508 * 12 10 9 40 40 H 1.09001 * 109.86844 * 261.41168 * 13 12 10 41 41 H 1.09000 * 109.87238 * 140.27737 * 13 12 10 42 42 H 1.09003 * 109.46477 * 309.87526 * 15 14 13 43 43 H 1.08993 * 109.47002 * 189.87852 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.39866 * 96.34184 * 27 14 13 47 47 H 1.08997 * 110.40905 * 218.77337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7143 1.9385 0.1238 7 8 4.4585 1.0530 -0.2409 8 7 4.2216 3.0754 0.6398 9 6 5.5901 3.5708 0.9026 10 6 4.9736 4.9625 0.8311 11 6 3.6316 4.3242 1.1686 12 6 5.5081 5.9981 1.8323 13 6 6.5898 6.7398 1.0139 14 7 6.2931 6.5134 -0.4137 15 6 6.1296 7.7876 -1.1260 16 6 7.4637 8.4811 -1.2276 17 8 8.4534 7.9643 -0.7536 18 7 7.5572 9.6749 -1.8460 19 6 8.7699 10.3085 -1.9335 20 1 9.6510 9.8487 -1.5108 21 6 8.8653 11.5420 -2.5660 22 7 10.0276 12.1495 -2.6494 23 14 7.3411 12.3375 -3.2964 24 1 6.6893 13.1920 -2.2717 25 1 7.7285 13.1711 -4.4627 26 1 6.3939 11.2816 -3.7356 27 6 5.0690 5.6855 -0.5186 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.6636 2.2778 -1.3969 32 1 1.9884 3.4635 -1.3075 33 1 2.2354 1.9149 -2.1491 34 1 6.2968 3.3600 0.1000 35 1 5.9742 3.3089 1.8885 36 1 3.4151 4.2917 2.2364 37 1 2.8005 4.7049 0.5749 38 1 5.9496 5.5054 2.6986 39 1 4.7192 6.6842 2.1406 40 1 7.5752 6.3412 1.2553 41 1 6.5551 7.8066 1.2349 42 1 5.4310 8.4219 -0.5802 43 1 5.7418 7.5973 -2.1267 44 1 6.7657 10.0880 -2.2254 45 1 10.0943 13.0104 -3.0912 46 1 4.1948 6.3179 -0.6735 47 1 5.1662 4.9644 -1.3301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147034025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -40.905298 kcal Electronic energy + Delta-G solvation = -27494.150436 eV Core-core repulsion = 23610.908256 eV Total energy + Delta-G solvation = -3883.242180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.06206 -40.46746 -39.65278 -37.57168 -35.91290 -34.44587 -33.74612 -32.57677 -30.16142 -29.62008 -28.98889 -27.53359 -26.88102 -25.61658 -24.80456 -22.36321 -21.21903 -20.79353 -20.14131 -19.61472 -18.27703 -17.93367 -17.67363 -17.04697 -16.79985 -16.65204 -16.41199 -16.01561 -15.58980 -15.36952 -15.25106 -15.17692 -14.70463 -14.45356 -14.38513 -14.29242 -14.13713 -13.81861 -13.75728 -13.39756 -13.30683 -13.22091 -12.99726 -12.87909 -12.85183 -12.62567 -12.42028 -12.38808 -12.00298 -11.97109 -11.91634 -11.48454 -11.43386 -10.86330 -10.81593 -10.38576 -10.22370 -9.81651 -9.14187 -8.75897 -8.39681 -6.00510 0.41289 1.30774 1.36592 1.45693 1.47505 1.64653 1.74756 1.99670 2.24444 2.63653 3.13677 3.16443 3.20153 3.38701 3.58586 3.72688 3.81352 3.94600 3.98493 4.19864 4.27907 4.34170 4.36893 4.38350 4.40967 4.48248 4.52109 4.58986 4.61544 4.62686 4.66972 4.74601 4.79793 4.86690 4.92487 4.93818 5.02902 5.11868 5.15931 5.31401 5.54645 5.92963 6.05212 6.14033 6.58094 6.62311 6.91005 6.98154 7.42593 8.01058 8.78196 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.002020 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.303562 B =13861.340477 C =14391.867655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.279 6.279 3 C -0.067 4.067 4 H 0.134 0.866 5 C -0.138 4.138 6 C 0.545 3.455 7 O -0.579 6.579 8 N -0.640 5.640 9 C 0.119 3.881 10 C -0.094 4.094 11 C 0.128 3.872 12 C -0.111 4.111 13 C 0.054 3.946 14 N -0.539 5.539 15 C 0.053 3.947 16 C 0.449 3.551 17 O -0.609 6.609 18 N -0.594 5.594 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.230 1.230 27 C 0.071 3.929 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.086 0.914 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.598 -15.229 8.550 35.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.054 6.054 3 C -0.198 4.198 4 H 0.152 0.848 5 C -0.196 4.196 6 C 0.334 3.666 7 O -0.458 6.458 8 N -0.375 5.375 9 C -0.003 4.003 10 C -0.095 4.095 11 C 0.007 3.993 12 C -0.150 4.150 13 C -0.073 4.073 14 N -0.264 5.264 15 C -0.078 4.078 16 C 0.237 3.763 17 O -0.492 6.492 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.153 1.153 27 C -0.055 4.055 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.407 -17.194 8.295 34.225 hybrid contribution -0.649 1.993 -0.310 2.119 sum -29.056 -15.201 7.986 33.750 Atomic orbital electron populations 1.23570 0.90692 1.07717 1.06470 1.87830 1.10408 1.09091 1.98101 1.23200 0.94503 0.96687 1.05453 0.84761 1.21986 1.03033 1.01610 0.93017 1.19948 0.89865 0.80017 0.76748 1.90739 1.61989 1.41870 1.51234 1.50214 1.10412 1.16120 1.60759 1.23069 0.85361 0.90137 1.01764 1.22279 0.97093 0.93573 0.96554 1.23369 0.96037 0.77847 1.02003 1.22555 0.98151 0.96993 0.97278 1.22693 0.99105 0.99011 0.86524 1.63114 1.35531 1.15281 1.12459 1.22000 0.92636 0.91132 1.02063 1.21023 0.92119 0.81707 0.81453 1.90551 1.40694 1.66424 1.51549 1.42035 1.09074 1.19247 1.53251 1.18979 0.87335 1.02578 1.36695 0.92975 1.26152 1.01608 0.96471 0.97413 1.69816 1.26680 1.17055 1.44220 0.85338 0.77774 0.79474 0.78750 1.17918 1.20265 1.15342 1.22649 0.91188 0.95539 0.96149 0.87087 0.88760 0.88843 0.88799 0.89433 0.92872 0.92274 0.88206 0.86013 0.86618 0.88948 0.87751 0.93428 0.93997 0.89440 0.86735 0.77509 0.91230 0.89591 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.45 113.37 1.19 0.34 16 2 S -0.28 -5.14 21.10 -56.49 -1.19 -6.33 16 3 C -0.07 -0.94 2.96 29.85 0.09 -0.86 16 4 H 0.13 1.02 7.98 -2.39 -0.02 1.00 16 5 C -0.14 -1.38 9.08 71.98 0.65 -0.73 16 6 C 0.55 12.19 7.18 87.66 0.63 12.82 16 7 O -0.58 -19.53 16.86 -3.03 -0.05 -19.58 16 8 N -0.64 -10.80 3.62 -863.26 -3.12 -13.93 16 9 C 0.12 2.28 8.14 85.91 0.70 2.98 16 10 C -0.09 -1.29 0.99 -52.15 -0.05 -1.35 16 11 C 0.13 0.92 7.86 85.91 0.68 1.60 16 12 C -0.11 -1.57 6.35 31.35 0.20 -1.37 16 13 C 0.05 1.45 5.67 86.72 0.49 1.94 16 14 N -0.54 -15.16 4.86 -891.48 -4.33 -19.49 16 15 C 0.05 1.53 5.03 85.56 0.43 1.96 16 16 C 0.45 20.06 7.43 87.66 0.65 20.71 16 17 O -0.61 -33.86 15.12 -3.07 -0.05 -33.90 16 18 N -0.59 -27.68 5.09 -306.98 -1.56 -29.24 16 19 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 22 N -0.94 -56.68 13.96 21.66 0.30 -56.38 16 23 Si 0.97 38.24 27.74 68.60 1.90 40.15 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 27 C 0.07 1.29 6.10 86.20 0.53 1.81 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.43 7.14 -2.39 -0.02 0.41 16 31 H 0.09 0.49 6.92 -2.39 -0.02 0.47 16 32 H 0.09 0.60 8.13 -2.39 -0.02 0.58 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 35 H 0.10 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.29 16 37 H 0.12 0.22 8.11 -2.39 -0.02 0.20 16 38 H 0.09 1.13 7.99 -2.39 -0.02 1.11 16 39 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.22 7.31 -2.39 -0.02 1.20 16 42 H 0.09 1.94 7.96 -2.39 -0.02 1.92 16 43 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 44 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.09 1.01 7.80 -2.39 -0.02 1.00 16 47 H 0.07 1.45 8.07 -2.39 -0.02 1.44 16 Total: -1.00 -91.07 393.92 -0.22 -91.29 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.38 Total: 26.40 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.50 Total: 21.02 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -8.71 Total: -119.04 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.10 Total: -53.49 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.15 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.19 Total: -6.33 kcal Total: -91.07 -0.22 -91.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147034025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.385 kcal (2) G-P(sol) polarization free energy of solvation -91.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds