Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46829 * 2 1 4 4 C 1.46899 * 111.00157 * 282.23022 * 3 2 1 5 5 C 1.50702 * 109.47208 * 76.65123 * 4 3 2 6 6 C 1.41376 * 128.00625 * 245.90242 * 5 4 3 7 7 N 1.30177 * 106.39807 * 180.29407 * 6 5 4 8 8 O 1.20927 * 111.59885 * 359.53176 * 7 6 5 9 9 C 1.34044 * 111.56822 * 0.48570 * 8 7 6 10 10 C 1.50699 * 126.77466 * 179.68871 * 9 8 7 11 11 C 1.46904 * 111.00011 * 158.27891 * 3 2 1 12 12 H 1.08996 * 109.47253 * 174.24501 * 11 3 2 13 13 C 1.52999 * 109.47060 * 54.23847 * 11 3 2 14 14 C 1.53001 * 109.46925 * 294.24329 * 11 3 2 15 15 N 1.46504 * 109.47113 * 303.22563 * 14 11 3 16 16 C 1.34776 * 120.00203 * 179.97438 * 15 14 11 17 17 O 1.21279 * 119.99729 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00085 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47045 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99979 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00021 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99946 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47047 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47157 * 120.00114 * 24 22 20 27 27 H 1.48499 * 109.47574 * 239.99973 * 24 22 20 28 28 H 1.09003 * 109.47147 * 188.60539 * 1 2 3 29 29 H 1.08997 * 109.46952 * 308.59832 * 1 2 3 30 30 H 1.08997 * 109.46946 * 68.59750 * 1 2 3 31 31 H 1.09001 * 109.47171 * 239.99930 * 2 1 3 32 32 H 1.08997 * 109.46836 * 119.99619 * 2 1 3 33 33 H 1.08999 * 109.46967 * 316.64957 * 4 3 2 34 34 H 1.09002 * 109.47331 * 196.65055 * 4 3 2 35 35 H 1.08002 * 126.80534 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.47006 * 270.02275 * 10 9 8 37 37 H 1.08993 * 109.47286 * 30.02400 * 10 9 8 38 38 H 1.09004 * 109.46648 * 150.02779 * 10 9 8 39 39 H 1.09002 * 109.46978 * 60.00732 * 13 11 3 40 40 H 1.09005 * 109.46947 * 179.97438 * 13 11 3 41 41 H 1.08996 * 109.47621 * 300.00429 * 13 11 3 42 42 H 1.09003 * 109.47512 * 63.22371 * 14 11 3 43 43 H 1.08997 * 109.47115 * 183.22733 * 14 11 3 44 44 H 0.97005 * 120.00005 * 0.02562 * 15 14 11 45 45 H 1.08994 * 109.47709 * 300.00911 * 18 16 15 46 46 H 1.09006 * 109.46894 * 60.00684 * 18 16 15 47 47 H 0.97005 * 119.99554 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.9212 1.9782 -1.3403 5 6 0.4882 2.3509 -1.6207 6 6 -0.3814 1.7989 -2.5891 7 7 -1.5123 2.4328 -2.4715 8 8 -1.4685 3.2620 -1.5924 9 6 -0.2647 3.2927 -1.0035 10 6 0.1661 4.1970 0.1224 11 6 3.3963 1.4567 0.5076 12 1 3.7700 2.4751 0.4018 13 6 4.2850 0.5017 -0.2918 14 6 3.4169 1.0568 1.9842 15 7 2.5064 1.9227 2.7375 16 6 2.3602 1.7532 4.0665 17 8 2.9829 0.8841 4.6390 18 6 1.4240 2.6444 4.8413 19 16 1.4483 2.1712 6.5882 20 6 0.3002 3.3395 7.2376 21 1 -0.1721 4.0549 6.5808 22 6 0.0028 3.3403 8.5934 23 7 0.5781 2.4680 9.3939 24 14 -1.2138 4.5793 9.2820 25 1 -1.7167 5.4424 8.1832 26 1 -2.3529 3.8599 9.9067 27 1 -0.5394 5.4202 10.3034 28 1 -0.3633 -1.0161 0.1538 29 1 -0.3633 0.6411 0.8031 30 1 -0.3633 0.3750 -0.9568 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2609 1.2563 -2.0829 34 1 2.5450 2.8707 -1.3893 35 1 -0.1515 1.0108 -3.2909 36 1 0.5858 5.1149 -0.2891 37 1 -0.6957 4.4385 0.7445 38 1 0.9199 3.6915 0.7261 39 1 4.2704 0.7866 -1.3439 40 1 5.3066 0.5552 0.0845 41 1 3.9114 -0.5168 -0.1860 42 1 3.0976 0.0194 2.0843 43 1 4.4283 1.1650 2.3759 44 1 2.0080 2.6177 2.2795 45 1 1.7439 3.6816 4.7417 46 1 0.4126 2.5369 4.4495 47 1 0.3700 2.4684 10.3414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151953696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 28.430074 kcal Electronic energy + Delta-G solvation = -28092.187870 eV Core-core repulsion = 24211.952297 eV Total energy + Delta-G solvation = -3880.235573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.15529 -39.78953 -38.55452 -35.28524 -33.83375 -33.33819 -32.40481 -32.09713 -30.41543 -29.25645 -28.14270 -26.41799 -25.65070 -25.25659 -23.30598 -22.76110 -21.00644 -20.20232 -19.90636 -17.85896 -17.75931 -17.32219 -16.63093 -16.30701 -16.13684 -15.41794 -15.17692 -14.85491 -14.78334 -14.61764 -14.02279 -13.77499 -13.64891 -13.44412 -13.21601 -13.13768 -12.94797 -12.81696 -12.68245 -12.57730 -12.48936 -12.27888 -12.05371 -11.83667 -11.63376 -11.30198 -11.19258 -11.05700 -11.04003 -10.99235 -10.73222 -10.21708 -9.77815 -9.34675 -9.28678 -9.05406 -8.80691 -8.71357 -8.19479 -6.46737 -6.19616 -3.89497 1.26656 1.95748 2.89372 3.08453 3.18012 3.23215 3.30226 3.34743 3.51524 3.81854 4.02748 4.22797 4.35626 4.41811 4.55424 4.59646 4.76695 4.88022 4.89055 5.05166 5.13920 5.15710 5.15872 5.20995 5.22380 5.27904 5.29578 5.36270 5.39415 5.51602 5.53976 5.62035 5.64982 5.69857 5.74232 5.82827 5.88331 5.93090 5.95126 6.13256 6.18715 6.62378 6.68417 6.78909 7.62212 7.84982 8.04327 8.37754 8.70837 9.26033 10.87839 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002825 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.195118 B = 9908.334073 C =11537.997203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.528 5.528 4 C 0.134 3.866 5 C -0.197 4.197 6 C -0.004 4.004 7 N -0.368 5.368 8 O 0.091 5.909 9 C -0.003 4.003 10 C -0.077 4.077 11 C 0.068 3.932 12 H 0.092 0.908 13 C -0.183 4.183 14 C 0.131 3.869 15 N -0.726 5.726 16 C 0.530 3.470 17 O -0.523 6.523 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.401 0.599 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 0.156 -26.677 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 N -0.252 5.252 4 C 0.006 3.994 5 C -0.201 4.201 6 C -0.183 4.183 7 N -0.072 5.072 8 O 0.027 5.973 9 C -0.067 4.067 10 C -0.135 4.135 11 C -0.040 4.040 12 H 0.110 0.890 13 C -0.242 4.242 14 C 0.006 3.994 15 N -0.380 5.380 16 C 0.316 3.684 17 O -0.398 6.398 18 C -0.302 4.302 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.201 0.799 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.236 0.764 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.865 -1.164 -25.849 26.162 hybrid contribution -0.501 1.317 -0.871 1.657 sum 3.364 0.153 -26.721 26.932 Atomic orbital electron populations 1.21967 0.94892 1.01514 1.02627 1.22158 0.96230 0.88118 1.01019 1.62110 1.20500 1.19640 1.22968 1.20249 0.89921 0.99439 0.89776 1.20847 0.98992 1.00215 1.00082 1.24805 0.89746 1.02253 1.01493 1.73908 1.22872 1.03689 1.06767 1.84817 1.31890 1.44468 1.36100 1.24298 0.84723 0.99640 0.98066 1.20423 1.03001 0.97045 0.93004 1.22053 0.87465 1.00429 0.94077 0.89015 1.22406 1.01008 1.00488 1.00335 1.21315 0.94400 0.94996 0.88687 1.45807 1.46798 1.37702 1.07730 1.20288 0.82273 0.84329 0.81501 1.90697 1.46437 1.33770 1.68881 1.23505 1.00716 1.01639 1.04353 1.85398 1.58403 1.46863 0.92887 1.22910 1.29131 1.20092 0.96039 0.90891 1.24991 0.96480 0.96253 0.95899 1.70036 1.41274 1.34242 1.04784 0.86130 0.80192 0.80360 0.78892 1.19588 1.20606 1.20605 0.92798 0.91816 0.92488 0.94483 0.90317 0.93001 0.89584 0.79899 0.89696 0.89731 0.88138 0.92186 0.91417 0.91846 0.91663 0.91180 0.76442 0.89379 0.89325 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.34 37.16 0.35 -1.07 16 2 C 0.05 0.41 4.27 -3.82 -0.02 0.40 16 3 N -0.53 -3.59 3.51 -228.08 -0.80 -4.39 16 4 C 0.13 0.78 4.64 -4.98 -0.02 0.76 16 5 C -0.20 -1.50 3.89 -104.42 -0.41 -1.91 16 6 C 0.00 -0.03 10.07 -17.06 -0.17 -0.20 16 7 N -0.37 -4.08 12.07 30.35 0.37 -3.71 16 8 O 0.09 0.98 11.20 17.17 0.19 1.17 16 9 C 0.00 -0.03 7.49 -35.30 -0.26 -0.29 16 10 C -0.08 -0.48 10.30 36.01 0.37 -0.11 16 11 C 0.07 0.45 2.42 -67.71 -0.16 0.29 16 12 H 0.09 0.52 7.83 -51.93 -0.41 0.12 16 13 C -0.18 -1.02 8.57 37.16 0.32 -0.70 16 14 C 0.13 1.34 4.93 -4.04 -0.02 1.32 16 15 N -0.73 -8.97 5.40 -60.29 -0.33 -9.29 16 16 C 0.53 9.56 7.85 -10.99 -0.09 9.48 16 17 O -0.52 -11.66 15.86 5.56 0.09 -11.57 16 18 C -0.15 -2.99 6.16 36.00 0.22 -2.76 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.09 9.50 30.94 0.29 -14.80 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 24 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.53 4.31 -51.93 -0.22 0.30 16 31 H 0.04 0.26 7.12 -51.93 -0.37 -0.11 16 32 H 0.08 0.73 5.83 -51.93 -0.30 0.43 16 33 H 0.05 0.27 7.17 -51.93 -0.37 -0.10 16 34 H 0.09 0.42 7.72 -51.93 -0.40 0.01 16 35 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.61 6.82 -51.93 -0.35 0.25 16 39 H 0.06 0.28 7.18 -51.93 -0.37 -0.09 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.39 6.78 -51.93 -0.35 0.04 16 42 H 0.07 0.76 6.35 -51.93 -0.33 0.43 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.40 4.00 7.37 -40.82 -0.30 3.70 16 45 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 46 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -34.85 391.43 -7.91 -42.76 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.14 Total: -0.27 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 0.30 Total: -7.63 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.03 Total: -42.79 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.28 Total: -10.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.85 -7.91 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.188 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds