Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46829 * 2 1 4 4 C 1.46899 * 111.00157 * 282.23022 * 3 2 1 5 5 C 1.50702 * 109.47208 * 76.65123 * 4 3 2 6 6 C 1.41376 * 128.00625 * 245.90242 * 5 4 3 7 7 N 1.30177 * 106.39807 * 180.29407 * 6 5 4 8 8 O 1.20927 * 111.59885 * 359.53176 * 7 6 5 9 9 C 1.34044 * 111.56822 * 0.48570 * 8 7 6 10 10 C 1.50699 * 126.77466 * 179.68871 * 9 8 7 11 11 C 1.46904 * 111.00011 * 158.27891 * 3 2 1 12 12 H 1.08996 * 109.47253 * 174.24501 * 11 3 2 13 13 C 1.52999 * 109.47060 * 54.23847 * 11 3 2 14 14 C 1.53001 * 109.46925 * 294.24329 * 11 3 2 15 15 N 1.46504 * 109.47113 * 303.22563 * 14 11 3 16 16 C 1.34776 * 120.00203 * 179.97438 * 15 14 11 17 17 O 1.21279 * 119.99729 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00085 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47045 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99979 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00021 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99946 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47047 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47157 * 120.00114 * 24 22 20 27 27 H 1.48499 * 109.47574 * 239.99973 * 24 22 20 28 28 H 1.09003 * 109.47147 * 188.60539 * 1 2 3 29 29 H 1.08997 * 109.46952 * 308.59832 * 1 2 3 30 30 H 1.08997 * 109.46946 * 68.59750 * 1 2 3 31 31 H 1.09001 * 109.47171 * 239.99930 * 2 1 3 32 32 H 1.08997 * 109.46836 * 119.99619 * 2 1 3 33 33 H 1.08999 * 109.46967 * 316.64957 * 4 3 2 34 34 H 1.09002 * 109.47331 * 196.65055 * 4 3 2 35 35 H 1.08002 * 126.80534 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.47006 * 270.02275 * 10 9 8 37 37 H 1.08993 * 109.47286 * 30.02400 * 10 9 8 38 38 H 1.09004 * 109.46648 * 150.02779 * 10 9 8 39 39 H 1.09002 * 109.46978 * 60.00732 * 13 11 3 40 40 H 1.09005 * 109.46947 * 179.97438 * 13 11 3 41 41 H 1.08996 * 109.47621 * 300.00429 * 13 11 3 42 42 H 1.09003 * 109.47512 * 63.22371 * 14 11 3 43 43 H 1.08997 * 109.47115 * 183.22733 * 14 11 3 44 44 H 0.97005 * 120.00005 * 0.02562 * 15 14 11 45 45 H 1.08994 * 109.47709 * 300.00911 * 18 16 15 46 46 H 1.09006 * 109.46894 * 60.00684 * 18 16 15 47 47 H 0.97005 * 119.99554 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.9212 1.9782 -1.3403 5 6 0.4882 2.3509 -1.6207 6 6 -0.3814 1.7989 -2.5891 7 7 -1.5123 2.4328 -2.4715 8 8 -1.4685 3.2620 -1.5924 9 6 -0.2647 3.2927 -1.0035 10 6 0.1661 4.1970 0.1224 11 6 3.3963 1.4567 0.5076 12 1 3.7700 2.4751 0.4018 13 6 4.2850 0.5017 -0.2918 14 6 3.4169 1.0568 1.9842 15 7 2.5064 1.9227 2.7375 16 6 2.3602 1.7532 4.0665 17 8 2.9829 0.8841 4.6390 18 6 1.4240 2.6444 4.8413 19 16 1.4483 2.1712 6.5882 20 6 0.3002 3.3395 7.2376 21 1 -0.1721 4.0549 6.5808 22 6 0.0028 3.3403 8.5934 23 7 0.5781 2.4680 9.3939 24 14 -1.2138 4.5793 9.2820 25 1 -1.7167 5.4424 8.1832 26 1 -2.3529 3.8599 9.9067 27 1 -0.5394 5.4202 10.3034 28 1 -0.3633 -1.0161 0.1538 29 1 -0.3633 0.6411 0.8031 30 1 -0.3633 0.3750 -0.9568 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2609 1.2563 -2.0829 34 1 2.5450 2.8707 -1.3893 35 1 -0.1515 1.0108 -3.2909 36 1 0.5858 5.1149 -0.2891 37 1 -0.6957 4.4385 0.7445 38 1 0.9199 3.6915 0.7261 39 1 4.2704 0.7866 -1.3439 40 1 5.3066 0.5552 0.0845 41 1 3.9114 -0.5168 -0.1860 42 1 3.0976 0.0194 2.0843 43 1 4.4283 1.1650 2.3759 44 1 2.0080 2.6177 2.2795 45 1 1.7439 3.6816 4.7417 46 1 0.4126 2.5369 4.4495 47 1 0.3700 2.4684 10.3414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151953696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 4.174825 kcal Electronic energy + Delta-G solvation = -28093.239657 eV Core-core repulsion = 24211.952297 eV Total energy + Delta-G solvation = -3881.287359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.82169 -40.77017 -39.60405 -36.11017 -34.79442 -34.54816 -33.96961 -32.88108 -31.28977 -30.42444 -28.70815 -27.70641 -27.02552 -26.23710 -23.97979 -23.39753 -21.69868 -21.55069 -20.54911 -19.73027 -18.50907 -17.98710 -17.65945 -17.36051 -17.24516 -16.85197 -16.20206 -16.12898 -15.93883 -15.65316 -15.23469 -14.72975 -14.48547 -14.30636 -14.15295 -14.13840 -13.84223 -13.67822 -13.47187 -13.29770 -13.17261 -13.11984 -13.06456 -12.90327 -12.87527 -12.72381 -12.56258 -12.30315 -12.00691 -11.79786 -11.70150 -11.61643 -11.13084 -10.91568 -10.86621 -10.21918 -9.94992 -9.88748 -9.29722 -8.62050 -8.31895 -6.08858 0.63078 1.31274 1.34690 1.43121 1.50895 1.61943 1.73114 2.28954 2.31038 2.42335 2.95781 3.02443 3.37963 3.46474 3.77144 3.79556 3.99651 4.02856 4.13043 4.15501 4.31620 4.33484 4.38203 4.46950 4.57795 4.60545 4.63151 4.68561 4.69787 4.74031 4.79504 4.82988 4.89923 4.94170 4.99054 5.09041 5.14964 5.17055 5.31756 5.36552 5.37421 5.45478 5.58328 6.11680 6.14071 6.23263 6.67677 7.09909 7.38564 7.38943 8.77480 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002825 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.195118 B = 9908.334073 C =11537.997203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 N -0.533 5.533 4 C 0.137 3.863 5 C -0.194 4.194 6 C -0.002 4.002 7 N -0.403 5.403 8 O 0.067 5.933 9 C -0.011 4.011 10 C -0.077 4.077 11 C 0.081 3.919 12 H 0.114 0.886 13 C -0.179 4.179 14 C 0.128 3.872 15 N -0.697 5.697 16 C 0.531 3.469 17 O -0.572 6.572 18 C -0.127 4.127 19 S -0.154 6.154 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.274 1.274 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.204 0.796 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.416 0.584 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 1.788 -28.908 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 N -0.257 5.257 4 C 0.010 3.990 5 C -0.199 4.199 6 C -0.180 4.180 7 N -0.111 5.111 8 O 0.006 5.994 9 C -0.075 4.075 10 C -0.134 4.134 11 C -0.027 4.027 12 H 0.131 0.869 13 C -0.238 4.238 14 C 0.004 3.996 15 N -0.350 5.350 16 C 0.317 3.683 17 O -0.451 6.451 18 C -0.278 4.278 19 S 0.073 5.927 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.819 3.181 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.221 0.779 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.254 0.746 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.240 0.507 -28.132 28.454 hybrid contribution -0.574 0.765 -0.315 1.007 sum 3.666 1.272 -28.447 28.711 Atomic orbital electron populations 1.21914 0.96099 1.00751 1.01780 1.22051 0.95035 0.88925 1.01015 1.62017 1.20681 1.18958 1.24077 1.20340 0.88929 1.00533 0.89215 1.21067 0.99722 0.99620 0.99500 1.25254 0.89212 1.01986 1.01591 1.73903 1.24428 1.04904 1.07886 1.84776 1.33109 1.44923 1.36591 1.24789 0.84224 1.00106 0.98352 1.20530 1.02963 0.97508 0.92399 1.21963 0.87620 1.01855 0.91252 0.86851 1.22370 1.00692 0.99697 1.01062 1.21507 0.93319 0.93915 0.90890 1.45553 1.46128 1.37575 1.05763 1.20025 0.81700 0.83522 0.83088 1.90686 1.48432 1.35764 1.70254 1.23346 1.02401 1.03015 0.99079 1.85578 1.59020 1.48393 0.99675 1.23240 1.29068 1.20077 0.96685 0.89889 1.26111 0.98472 0.98344 0.96263 1.70199 1.43106 1.36366 1.05204 0.84928 0.77265 0.77561 0.78341 1.17907 1.20158 1.19941 0.93201 0.93953 0.92312 0.92927 0.91857 0.91572 0.87569 0.77877 0.87796 0.90127 0.87653 0.90396 0.91169 0.92577 0.93056 0.91583 0.74628 0.87156 0.87718 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.34 71.98 0.67 -1.94 16 2 C 0.06 0.80 4.27 86.31 0.37 1.17 16 3 N -0.53 -5.65 3.51 -875.51 -3.07 -8.73 16 4 C 0.14 1.08 4.64 85.56 0.40 1.48 16 5 C -0.19 -2.51 3.89 -19.74 -0.08 -2.58 16 6 C 0.00 -0.02 10.07 85.71 0.86 0.84 16 7 N -0.40 -8.73 12.07 -59.27 -0.72 -9.45 16 8 O 0.07 1.40 11.20 71.59 0.80 2.21 16 9 C -0.01 -0.17 7.49 25.04 0.19 0.02 16 10 C -0.08 -0.78 10.30 71.24 0.73 -0.05 16 11 C 0.08 0.80 2.42 44.91 0.11 0.91 16 12 H 0.11 0.74 7.83 -2.39 -0.02 0.72 16 13 C -0.18 -1.38 8.57 71.98 0.62 -0.76 16 14 C 0.13 2.41 4.93 86.38 0.43 2.83 16 15 N -0.70 -15.94 5.40 -463.05 -2.50 -18.44 16 16 C 0.53 18.88 7.85 87.66 0.69 19.57 16 17 O -0.57 -26.02 15.86 -3.03 -0.05 -26.07 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 20 C -0.54 -30.82 9.50 67.95 0.65 -30.18 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 24 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.01 4.31 -2.39 -0.01 1.00 16 31 H 0.05 0.59 7.12 -2.39 -0.02 0.57 16 32 H 0.06 1.10 5.83 -2.39 -0.01 1.09 16 33 H 0.07 0.39 7.17 -2.39 -0.02 0.38 16 34 H 0.11 0.49 7.72 -2.39 -0.02 0.47 16 35 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 0.94 6.82 -2.39 -0.02 0.93 16 39 H 0.08 0.38 7.18 -2.39 -0.02 0.36 16 40 H 0.07 0.54 8.14 -2.38 -0.02 0.53 16 41 H 0.06 0.54 6.78 -2.39 -0.02 0.52 16 42 H 0.05 1.16 6.35 -2.39 -0.02 1.15 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.42 7.09 7.37 -92.70 -0.68 6.41 16 45 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 46 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 47 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -79.25 391.43 2.46 -76.80 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.30 Total: 15.55 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.54 Total: -12.00 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -6.00 Total: -92.39 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.75 Total: -23.87 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -79.25 2.46 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.971 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds