Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47350 * 2 1 4 4 C 1.46894 * 111.00132 * 163.84518 * 3 2 1 5 5 C 1.50702 * 109.46876 * 288.19957 * 4 3 2 6 6 C 1.34325 * 126.44180 * 95.95786 * 5 4 3 7 7 N 1.34482 * 107.66925 * 180.02562 * 6 5 4 8 8 C 1.30260 * 108.69852 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.61639 * 179.97438 * 8 7 6 10 10 O 1.33970 * 108.75967 * 359.73879 * 8 7 6 11 11 C 1.46902 * 110.99762 * 287.79612 * 3 2 1 12 12 H 1.09003 * 109.47248 * 49.34493 * 11 3 2 13 13 C 1.52998 * 109.47374 * 289.34464 * 11 3 2 14 14 C 1.53004 * 109.47292 * 169.34013 * 11 3 2 15 15 N 1.46503 * 109.47140 * 306.20387 * 14 11 3 16 16 C 1.34780 * 120.00047 * 184.75167 * 15 14 11 17 17 O 1.21273 * 119.99727 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99802 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.46847 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99834 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99668 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99758 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47072 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47551 * 119.99761 * 24 22 20 27 27 H 1.48500 * 109.47396 * 240.00226 * 24 22 20 28 28 H 1.09010 * 109.47275 * 305.81943 * 1 2 3 29 29 H 1.09001 * 109.47447 * 65.81880 * 1 2 3 30 30 H 1.08999 * 109.47225 * 185.81880 * 1 2 3 31 31 H 1.09004 * 109.47267 * 239.99807 * 2 1 3 32 32 H 1.09004 * 109.47365 * 119.99800 * 2 1 3 33 33 H 1.08995 * 109.47373 * 48.20364 * 4 3 2 34 34 H 1.09010 * 109.47149 * 168.20471 * 4 3 2 35 35 H 1.08003 * 126.16871 * 359.97438 * 6 5 4 36 36 H 1.08997 * 109.47062 * 90.02547 * 9 8 7 37 37 H 1.08998 * 109.46713 * 210.02251 * 9 8 7 38 38 H 1.08997 * 109.47286 * 330.02259 * 9 8 7 39 39 H 1.09002 * 109.47407 * 180.02562 * 13 11 3 40 40 H 1.09004 * 109.46858 * 299.99663 * 13 11 3 41 41 H 1.08999 * 109.47209 * 59.99944 * 13 11 3 42 42 H 1.09002 * 109.46830 * 66.20324 * 14 11 3 43 43 H 1.08994 * 109.47676 * 186.20101 * 14 11 3 44 44 H 0.96999 * 119.99793 * 4.75754 * 15 14 11 45 45 H 1.09001 * 109.47330 * 299.99972 * 18 16 15 46 46 H 1.09000 * 109.47131 * 60.00770 * 18 16 15 47 47 H 0.97011 * 119.99344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4370 1.4422 0.3816 5 6 3.5735 1.1454 1.8528 6 6 3.8586 -0.0462 2.4033 7 7 3.8881 0.1173 3.7378 8 6 3.6316 1.3647 4.0115 9 6 3.5683 1.9652 5.3923 10 8 3.4385 2.0269 2.8630 11 6 1.8000 2.0210 -1.3058 12 1 0.7682 1.8609 -1.6190 13 6 2.7474 1.4067 -2.3382 14 6 2.0717 3.5225 -1.1940 15 7 1.2704 4.0840 -0.1036 16 6 1.2739 5.4131 0.1200 17 8 1.9400 6.1443 -0.5817 18 6 0.4492 5.9906 1.2413 19 16 0.6627 7.7875 1.2836 20 6 -0.3803 8.1875 2.6464 21 1 -0.9098 7.4047 3.1690 22 6 -0.5220 9.5088 3.0473 23 7 0.1230 10.4628 2.4099 24 14 -1.6282 9.9329 4.4915 25 1 -2.2353 8.6900 5.0318 26 1 -0.8260 10.5940 5.5521 27 1 -2.7031 10.8519 4.0386 28 1 -0.3634 0.6015 0.8334 29 1 -0.3634 0.4209 -0.9375 30 1 -0.3633 -1.0224 0.1042 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9977 0.7039 -0.1916 34 1 3.8294 2.4378 0.1738 35 1 4.0320 -0.9694 1.8703 36 1 4.5562 2.3273 5.6766 37 1 2.8622 2.7955 5.3952 38 1 3.2405 1.2070 6.1035 39 1 2.5847 1.8789 -3.3071 40 1 3.7791 1.5668 -2.0251 41 1 2.5537 0.3370 -2.4179 42 1 3.1297 3.6859 -0.9889 43 1 1.8036 4.0111 -2.1307 44 1 0.7375 3.4991 0.4575 45 1 -0.6022 5.7537 1.0783 46 1 0.7753 5.5632 2.1895 47 1 0.0236 11.3862 2.6899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151954035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -11.448711 kcal Electronic energy + Delta-G solvation = -27806.008449 eV Core-core repulsion = 23924.043602 eV Total energy + Delta-G solvation = -3881.964846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.47240 -39.77603 -38.50021 -34.88268 -34.49121 -32.88013 -32.39694 -32.13580 -30.75491 -29.32881 -27.99963 -26.06813 -25.37073 -25.12315 -23.02686 -22.37560 -21.33589 -20.15917 -19.81032 -17.80956 -17.43571 -17.02531 -16.43975 -16.34967 -16.11989 -15.27548 -15.12540 -14.77791 -14.74178 -14.53360 -14.21331 -13.98984 -13.79138 -13.35330 -13.28764 -13.19674 -12.98246 -12.84318 -12.64481 -12.59375 -12.47502 -12.32038 -11.95594 -11.89667 -11.62860 -11.44100 -11.25605 -11.05000 -10.98117 -10.94463 -10.72580 -10.66606 -9.76647 -9.31958 -9.04564 -8.98302 -8.75132 -8.69610 -8.17930 -6.45232 -6.18624 -3.88196 1.24148 2.44946 2.50856 3.10120 3.20567 3.23542 3.30307 3.34872 3.48211 3.85003 3.89066 4.23798 4.39837 4.42280 4.58421 4.66353 4.76823 4.80432 4.86387 4.89017 5.08110 5.14475 5.16596 5.18341 5.21517 5.25089 5.30885 5.35660 5.38798 5.41774 5.59614 5.62967 5.67869 5.69825 5.76602 5.83475 5.87406 5.94806 5.98252 6.14372 6.22627 6.52716 6.60224 6.79457 7.57320 7.63280 7.89973 8.38947 8.74061 9.26924 10.88871 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.003011 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.362504 B = 9298.030891 C =10970.948727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 N -0.529 5.529 4 C 0.132 3.868 5 C -0.030 4.030 6 C -0.041 4.041 7 N -0.489 5.489 8 C 0.193 3.807 9 C -0.060 4.060 10 O -0.186 6.186 11 C 0.068 3.932 12 H 0.098 0.902 13 C -0.186 4.186 14 C 0.130 3.870 15 N -0.726 5.726 16 C 0.531 3.469 17 O -0.525 6.525 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.405 0.595 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -25.581 -3.898 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.253 5.253 4 C 0.005 3.995 5 C -0.084 4.084 6 C -0.181 4.181 7 N -0.219 5.219 8 C -0.014 4.014 9 C -0.118 4.118 10 O -0.072 6.072 11 C -0.041 4.041 12 H 0.116 0.884 13 C -0.245 4.245 14 C 0.005 3.995 15 N -0.381 5.381 16 C 0.317 3.683 17 O -0.400 6.400 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.195 0.805 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.240 0.760 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.355 -24.303 -4.278 25.481 hybrid contribution -1.353 -0.920 0.837 1.838 sum 5.002 -25.223 -3.441 25.943 Atomic orbital electron populations 1.21776 0.94427 1.01779 1.02580 1.22215 0.96628 0.88344 1.01233 1.62091 1.16467 1.18052 1.28733 1.20473 0.90166 1.03829 0.85077 1.23172 1.05888 0.88646 0.90705 1.22985 1.06675 0.98491 0.89933 1.70442 1.19407 1.16879 1.15186 1.26337 0.99025 0.86624 0.89392 1.20295 1.04796 1.01868 0.84815 1.84472 1.67594 1.39888 1.15204 1.22066 1.00994 0.93643 0.87363 0.88422 1.22414 1.00252 1.01477 1.00379 1.21303 0.95915 0.90839 0.91478 1.45819 1.49948 1.07484 1.34820 1.20281 0.81644 0.81487 0.84911 1.90687 1.42112 1.59033 1.48130 1.23497 1.01743 1.05989 0.98892 1.85367 1.62530 0.92314 1.43318 1.22917 1.31985 0.95583 1.17674 0.90928 1.24986 0.96048 0.95254 0.97314 1.70037 1.40329 1.00463 1.39516 0.86131 0.79822 0.78485 0.81145 1.19616 1.20582 1.20602 0.91614 0.92630 0.92252 0.93980 0.90597 0.90784 0.88227 0.80517 0.88896 0.88902 0.88209 0.91080 0.91898 0.91827 0.92106 0.90818 0.76007 0.89435 0.89363 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.86 37.15 0.37 -0.63 16 2 C 0.04 0.29 5.43 -3.83 -0.02 0.27 16 3 N -0.53 -4.24 3.67 -228.08 -0.84 -5.07 16 4 C 0.13 1.11 4.24 -4.98 -0.02 1.09 16 5 C -0.03 -0.32 6.33 -35.69 -0.23 -0.55 16 6 C -0.04 -0.43 10.61 -17.77 -0.19 -0.62 16 7 N -0.49 -6.02 11.29 -11.10 -0.13 -6.14 16 8 C 0.19 2.26 8.34 -12.94 -0.11 2.15 16 9 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 10 O -0.19 -2.42 10.78 5.36 0.06 -2.36 16 11 C 0.07 0.52 2.41 -67.71 -0.16 0.35 16 12 H 0.10 0.72 6.50 -51.93 -0.34 0.38 16 13 C -0.19 -1.09 8.50 37.16 0.32 -0.77 16 14 C 0.13 1.45 4.89 -4.04 -0.02 1.43 16 15 N -0.73 -10.06 5.41 -60.29 -0.33 -10.39 16 16 C 0.53 10.17 7.85 -10.99 -0.09 10.08 16 17 O -0.52 -12.08 15.86 5.56 0.09 -12.00 16 18 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.05 0.36 6.82 -51.93 -0.35 0.00 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.23 6.28 -51.93 -0.33 -0.09 16 32 H 0.08 0.56 6.24 -51.93 -0.32 0.24 16 33 H 0.07 0.46 7.13 -51.93 -0.37 0.09 16 34 H 0.10 0.96 6.09 -51.92 -0.32 0.64 16 35 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 6.68 -51.93 -0.35 0.02 16 41 H 0.06 0.32 6.52 -51.93 -0.34 -0.02 16 42 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.40 4.99 8.02 -40.82 -0.33 4.67 16 45 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -36.25 396.08 -8.18 -44.44 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.15 Total: 1.84 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 0.65 Total: -3.27 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.55 Total: -47.21 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.15 Total: -14.36 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.25 -8.18 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.987 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds