Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47350 * 2 1 4 4 C 1.46894 * 111.00132 * 163.84518 * 3 2 1 5 5 C 1.50702 * 109.46876 * 288.19957 * 4 3 2 6 6 C 1.34325 * 126.44180 * 95.95786 * 5 4 3 7 7 N 1.34482 * 107.66925 * 180.02562 * 6 5 4 8 8 C 1.30260 * 108.69852 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.61639 * 179.97438 * 8 7 6 10 10 O 1.33970 * 108.75967 * 359.73879 * 8 7 6 11 11 C 1.46902 * 110.99762 * 287.79612 * 3 2 1 12 12 H 1.09003 * 109.47248 * 49.34493 * 11 3 2 13 13 C 1.52998 * 109.47374 * 289.34464 * 11 3 2 14 14 C 1.53004 * 109.47292 * 169.34013 * 11 3 2 15 15 N 1.46503 * 109.47140 * 306.20387 * 14 11 3 16 16 C 1.34780 * 120.00047 * 184.75167 * 15 14 11 17 17 O 1.21273 * 119.99727 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99802 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.46847 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99834 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99668 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99758 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47072 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47551 * 119.99761 * 24 22 20 27 27 H 1.48500 * 109.47396 * 240.00226 * 24 22 20 28 28 H 1.09010 * 109.47275 * 305.81943 * 1 2 3 29 29 H 1.09001 * 109.47447 * 65.81880 * 1 2 3 30 30 H 1.08999 * 109.47225 * 185.81880 * 1 2 3 31 31 H 1.09004 * 109.47267 * 239.99807 * 2 1 3 32 32 H 1.09004 * 109.47365 * 119.99800 * 2 1 3 33 33 H 1.08995 * 109.47373 * 48.20364 * 4 3 2 34 34 H 1.09010 * 109.47149 * 168.20471 * 4 3 2 35 35 H 1.08003 * 126.16871 * 359.97438 * 6 5 4 36 36 H 1.08997 * 109.47062 * 90.02547 * 9 8 7 37 37 H 1.08998 * 109.46713 * 210.02251 * 9 8 7 38 38 H 1.08997 * 109.47286 * 330.02259 * 9 8 7 39 39 H 1.09002 * 109.47407 * 180.02562 * 13 11 3 40 40 H 1.09004 * 109.46858 * 299.99663 * 13 11 3 41 41 H 1.08999 * 109.47209 * 59.99944 * 13 11 3 42 42 H 1.09002 * 109.46830 * 66.20324 * 14 11 3 43 43 H 1.08994 * 109.47676 * 186.20101 * 14 11 3 44 44 H 0.96999 * 119.99793 * 4.75754 * 15 14 11 45 45 H 1.09001 * 109.47330 * 299.99972 * 18 16 15 46 46 H 1.09000 * 109.47131 * 60.00770 * 18 16 15 47 47 H 0.97011 * 119.99344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4370 1.4422 0.3816 5 6 3.5735 1.1454 1.8528 6 6 3.8586 -0.0462 2.4033 7 7 3.8881 0.1173 3.7378 8 6 3.6316 1.3647 4.0115 9 6 3.5683 1.9652 5.3923 10 8 3.4385 2.0269 2.8630 11 6 1.8000 2.0210 -1.3058 12 1 0.7682 1.8609 -1.6190 13 6 2.7474 1.4067 -2.3382 14 6 2.0717 3.5225 -1.1940 15 7 1.2704 4.0840 -0.1036 16 6 1.2739 5.4131 0.1200 17 8 1.9400 6.1443 -0.5817 18 6 0.4492 5.9906 1.2413 19 16 0.6627 7.7875 1.2836 20 6 -0.3803 8.1875 2.6464 21 1 -0.9098 7.4047 3.1690 22 6 -0.5220 9.5088 3.0473 23 7 0.1230 10.4628 2.4099 24 14 -1.6282 9.9329 4.4915 25 1 -2.2353 8.6900 5.0318 26 1 -0.8260 10.5940 5.5521 27 1 -2.7031 10.8519 4.0386 28 1 -0.3634 0.6015 0.8334 29 1 -0.3634 0.4209 -0.9375 30 1 -0.3633 -1.0224 0.1042 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9977 0.7039 -0.1916 34 1 3.8294 2.4378 0.1738 35 1 4.0320 -0.9694 1.8703 36 1 4.5562 2.3273 5.6766 37 1 2.8622 2.7955 5.3952 38 1 3.2405 1.2070 6.1035 39 1 2.5847 1.8789 -3.3071 40 1 3.7791 1.5668 -2.0251 41 1 2.5537 0.3370 -2.4179 42 1 3.1297 3.6859 -0.9889 43 1 1.8036 4.0111 -2.1307 44 1 0.7375 3.4991 0.4575 45 1 -0.6022 5.7537 1.0783 46 1 0.7753 5.5632 2.1895 47 1 0.0236 11.3862 2.6899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151954035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -39.427688 kcal Electronic energy + Delta-G solvation = -27807.221708 eV Core-core repulsion = 23924.043602 eV Total energy + Delta-G solvation = -3883.178106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.30422 -40.83313 -39.62741 -35.76448 -35.62837 -34.57910 -33.64184 -32.94737 -31.44554 -30.76958 -28.64472 -27.73648 -26.84447 -25.81768 -23.71849 -23.15737 -22.14800 -21.63064 -20.52747 -19.76542 -18.18058 -17.95486 -17.69078 -17.34817 -17.20130 -16.87652 -16.40156 -16.16237 -15.73407 -15.65554 -15.15080 -14.99943 -14.63423 -14.58648 -14.38339 -14.21851 -13.88161 -13.71863 -13.64058 -13.44044 -13.21766 -13.15246 -13.01657 -12.99583 -12.89702 -12.58340 -12.49156 -12.41233 -12.28016 -11.95255 -11.69731 -11.55748 -11.48030 -11.15180 -10.93080 -10.26965 -10.03685 -9.69048 -9.34989 -8.65655 -8.34180 -6.11963 0.43372 1.28207 1.41682 1.47861 1.59318 1.65125 1.66198 1.75776 2.27161 2.35519 2.85719 2.99942 3.18117 3.34514 3.67175 3.75844 3.94815 3.97447 4.07856 4.09917 4.20871 4.26537 4.29416 4.33493 4.50899 4.51818 4.59839 4.60850 4.61895 4.65342 4.67970 4.78668 4.82872 4.86085 5.02981 5.08965 5.11055 5.13750 5.26318 5.38765 5.41012 5.42533 5.50420 5.95322 6.03993 6.20692 6.58739 6.75039 7.07169 7.30131 8.75350 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.003011 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.362504 B = 9298.030891 C =10970.948727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.136 3.864 5 C -0.039 4.039 6 C -0.043 4.043 7 N -0.512 5.512 8 C 0.179 3.821 9 C -0.060 4.060 10 O -0.212 6.212 11 C 0.080 3.920 12 H 0.107 0.893 13 C -0.181 4.181 14 C 0.126 3.874 15 N -0.700 5.700 16 C 0.532 3.468 17 O -0.569 6.569 18 C -0.127 4.127 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.204 0.796 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.415 0.585 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -28.095 -3.587 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 N -0.266 5.266 4 C 0.009 3.991 5 C -0.093 4.093 6 C -0.182 4.182 7 N -0.243 5.243 8 C -0.027 4.027 9 C -0.117 4.117 10 O -0.099 6.099 11 C -0.028 4.028 12 H 0.125 0.875 13 C -0.240 4.240 14 C 0.002 3.998 15 N -0.353 5.353 16 C 0.317 3.683 17 O -0.448 6.448 18 C -0.278 4.278 19 S 0.080 5.920 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.221 0.779 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.252 0.748 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.482 -26.885 -3.975 27.725 hybrid contribution -1.046 -0.270 0.690 1.282 sum 4.435 -27.155 -3.284 27.710 Atomic orbital electron populations 1.21764 0.94464 1.02113 1.02055 1.22217 0.96473 0.87435 1.01880 1.62017 1.16391 1.19240 1.28975 1.20524 0.90738 1.03784 0.84081 1.23636 1.05869 0.88555 0.91233 1.23410 1.05971 0.99384 0.89428 1.70452 1.20219 1.17253 1.16330 1.27038 0.98770 0.86740 0.90160 1.20468 1.05633 1.02205 0.83441 1.84468 1.68168 1.41110 1.16164 1.21949 1.02074 0.90868 0.87916 0.87532 1.22378 0.99683 1.02291 0.99670 1.21533 0.95029 0.93342 0.89933 1.45613 1.49144 1.05593 1.34980 1.20005 0.81151 0.82942 0.84162 1.90674 1.44083 1.60465 1.49619 1.23333 1.03326 1.00686 1.00498 1.85516 1.63378 0.99075 1.44078 1.23230 1.32094 0.96322 1.17763 0.90141 1.26116 0.97523 0.94945 1.00454 1.70193 1.42022 1.01024 1.41500 0.84912 0.77513 0.78649 0.76910 1.18117 1.19800 1.19860 0.93390 0.92123 0.91276 0.91991 0.91164 0.88071 0.89776 0.77934 0.87649 0.88780 0.86853 0.90773 0.91753 0.90113 0.92709 0.91302 0.74776 0.87647 0.88079 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.86 71.98 0.71 -0.91 16 2 C 0.05 0.50 5.43 86.30 0.47 0.97 16 3 N -0.54 -7.49 3.67 -875.52 -3.21 -10.71 16 4 C 0.14 2.05 4.24 85.56 0.36 2.41 16 5 C -0.04 -0.80 6.33 24.79 0.16 -0.65 16 6 C -0.04 -0.83 10.61 83.39 0.88 0.05 16 7 N -0.51 -12.20 11.29 -303.81 -3.43 -15.63 16 8 C 0.18 4.14 8.34 88.34 0.74 4.88 16 9 C -0.06 -0.93 10.51 71.24 0.75 -0.18 16 10 O -0.21 -5.50 10.78 -3.74 -0.04 -5.54 16 11 C 0.08 1.03 2.41 44.92 0.11 1.14 16 12 H 0.11 1.25 6.50 -2.39 -0.02 1.24 16 13 C -0.18 -1.57 8.50 71.98 0.61 -0.96 16 14 C 0.13 2.69 4.89 86.38 0.42 3.11 16 15 N -0.70 -18.80 5.41 -463.06 -2.50 -21.31 16 16 C 0.53 20.46 7.85 87.65 0.69 21.14 16 17 O -0.57 -26.94 15.86 -3.01 -0.05 -26.98 16 18 C -0.13 -5.30 6.16 71.23 0.44 -4.87 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 20 C -0.55 -31.74 9.50 67.96 0.65 -31.09 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 24 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.61 6.82 -2.39 -0.02 0.59 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.44 6.28 -2.39 -0.01 0.42 16 32 H 0.07 0.86 6.24 -2.38 -0.01 0.85 16 33 H 0.10 0.95 7.13 -2.39 -0.02 0.94 16 34 H 0.08 1.55 6.09 -2.38 -0.01 1.53 16 35 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.56 6.68 -2.39 -0.02 0.55 16 41 H 0.08 0.47 6.52 -2.39 -0.02 0.46 16 42 H 0.05 1.28 6.57 -2.39 -0.02 1.27 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.42 9.62 8.02 -92.71 -0.74 8.88 16 45 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 46 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 47 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -81.07 396.08 -0.39 -81.46 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.25 Total: 21.98 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 7.45 Total: -3.65 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -8.86 Total: -103.73 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.09 Total: -32.52 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -81.07 -0.39 -81.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.030 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds