Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.46862 * 2 1 4 4 C 1.46900 * 110.99788 * 168.52705 * 3 2 1 5 5 C 1.50705 * 109.47088 * 293.95748 * 4 3 2 6 6 N 1.30176 * 126.80135 * 90.03030 * 5 4 3 7 7 O 1.20917 * 111.60067 * 179.97438 * 6 5 4 8 8 C 1.34038 * 111.57255 * 359.97438 * 7 6 5 9 9 C 1.35456 * 106.44504 * 359.74652 * 8 7 6 10 10 C 1.50697 * 128.00796 * 180.24139 * 9 8 7 11 11 C 1.46901 * 111.00312 * 292.48115 * 3 2 1 12 12 H 1.08999 * 109.47035 * 49.26290 * 11 3 2 13 13 C 1.53003 * 109.46973 * 289.26416 * 11 3 2 14 14 C 1.53002 * 109.47044 * 169.26067 * 11 3 2 15 15 N 1.46497 * 109.47114 * 303.90173 * 14 11 3 16 16 C 1.34774 * 119.99610 * 175.04365 * 15 14 11 17 17 O 1.21279 * 120.00450 * 4.76423 * 16 15 14 18 18 C 1.50700 * 119.99871 * 184.76961 * 16 15 14 19 19 S 1.81004 * 109.47398 * 185.30055 * 18 16 15 20 20 C 1.76197 * 100.00202 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99737 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99990 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99945 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46931 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46828 * 119.99958 * 24 22 20 27 27 H 1.48497 * 109.46983 * 239.99876 * 24 22 20 28 28 H 1.09004 * 109.47304 * 187.33567 * 1 2 3 29 29 H 1.09002 * 109.47320 * 307.33336 * 1 2 3 30 30 H 1.08998 * 109.47573 * 67.33410 * 1 2 3 31 31 H 1.09001 * 109.47139 * 240.00397 * 2 1 3 32 32 H 1.08995 * 109.47277 * 120.00371 * 2 1 3 33 33 H 1.09001 * 109.47104 * 173.95743 * 4 3 2 34 34 H 1.09001 * 109.47422 * 53.95378 * 4 3 2 35 35 H 1.08000 * 126.78407 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46854 * 270.15720 * 10 9 8 37 37 H 1.08995 * 109.47222 * 30.16255 * 10 9 8 38 38 H 1.09006 * 109.47196 * 150.16616 * 10 9 8 39 39 H 1.08999 * 109.47137 * 299.99812 * 13 11 3 40 40 H 1.08990 * 109.47079 * 60.00007 * 13 11 3 41 41 H 1.09001 * 109.46390 * 180.02562 * 13 11 3 42 42 H 1.09008 * 109.46751 * 63.89777 * 14 11 3 43 43 H 1.08997 * 109.47254 * 183.89709 * 14 11 3 44 44 H 0.96993 * 120.00147 * 355.03711 * 15 14 11 45 45 H 1.08997 * 109.47583 * 305.30121 * 18 16 15 46 46 H 1.09005 * 109.47325 * 65.30176 * 18 16 15 47 47 H 0.97005 * 119.99562 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4622 1.4334 0.2728 5 6 3.7235 0.9606 1.6797 6 7 3.9577 -0.2619 2.0607 7 8 4.1304 -0.3305 3.2555 8 6 4.0308 0.8728 3.8377 9 6 3.7701 1.7581 2.8462 10 6 3.5719 3.2476 2.9606 11 6 1.7006 2.0562 -1.2672 12 1 0.6481 1.9024 -1.5049 13 6 2.5667 1.4727 -2.3854 14 6 1.9798 3.5547 -1.1350 15 7 1.2208 4.0950 -0.0044 16 6 1.3872 5.3800 0.3663 17 8 2.0990 6.1126 -0.2876 18 6 0.6889 5.9066 1.5936 19 16 0.9823 7.6869 1.7376 20 6 0.0803 8.0273 3.2124 21 1 -0.4342 7.2293 3.7271 22 6 0.0309 9.3211 3.7126 23 7 0.6584 10.2936 3.0856 24 14 -0.9248 9.6820 5.2766 25 1 -1.5346 8.4269 5.7847 26 1 -0.0049 10.2364 6.3020 27 1 -1.9951 10.6694 4.9859 28 1 -0.3634 -1.0193 0.1312 29 1 -0.3634 0.6232 0.8171 30 1 -0.3634 0.3960 -0.9483 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8189 2.4573 0.1614 34 1 3.9870 0.7872 -0.4309 35 1 4.1414 1.0937 4.8891 36 1 2.5161 3.4619 3.1268 37 1 4.1563 3.6287 3.7979 38 1 3.8996 3.7296 2.0394 39 1 3.6192 1.6265 -2.1477 40 1 2.3677 0.4052 -2.4796 41 1 2.3303 1.9711 -3.3256 42 1 3.0451 3.7122 -0.9658 43 1 1.6784 4.0627 -2.0510 44 1 0.5984 3.5280 0.4771 45 1 -0.3818 5.7204 1.5105 46 1 1.0779 5.4016 2.4778 47 1 0.6242 11.1977 3.4354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151954383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = 25.657812 kcal Electronic energy + Delta-G solvation = -28255.768888 eV Core-core repulsion = 24375.413101 eV Total energy + Delta-G solvation = -3880.355787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.07423 -39.78238 -38.52296 -35.26877 -34.29722 -32.51537 -32.41679 -32.07057 -30.27572 -29.30610 -28.14242 -26.46374 -25.96641 -25.36505 -22.98848 -21.86041 -21.52234 -20.18354 -19.66409 -17.88677 -17.77839 -17.61958 -16.47150 -16.35354 -16.13236 -15.40731 -15.15186 -14.79584 -14.79317 -14.58282 -14.01802 -13.76360 -13.49331 -13.32986 -13.20670 -13.12161 -12.91650 -12.82585 -12.64582 -12.46106 -12.32912 -12.26009 -11.87450 -11.83749 -11.63367 -11.24940 -11.15617 -11.06760 -11.00309 -10.88867 -10.74332 -10.12170 -9.78708 -9.44115 -9.33812 -9.06506 -8.76217 -8.64769 -8.20246 -6.47697 -6.20791 -3.90545 1.34140 2.00800 3.08602 3.12158 3.17624 3.21886 3.29240 3.34225 3.53971 3.82868 4.00276 4.21754 4.30311 4.47186 4.65108 4.78592 4.84550 4.88961 4.93839 5.01650 5.12703 5.14598 5.19678 5.25361 5.28142 5.31435 5.41476 5.47333 5.53312 5.61582 5.64635 5.70830 5.74142 5.75841 5.78010 5.81578 5.89279 5.94248 5.97213 6.14481 6.24614 6.61863 6.68929 6.80066 7.61127 7.87454 8.09682 8.36657 8.71714 9.24960 10.86624 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.003013 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.393812 B = 9291.688313 C =10556.030337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.521 5.521 4 C 0.130 3.870 5 C 0.028 3.972 6 N -0.366 5.366 7 O 0.096 5.904 8 C -0.072 4.072 9 C -0.175 4.175 10 C -0.077 4.077 11 C 0.066 3.934 12 H 0.097 0.903 13 C -0.186 4.186 14 C 0.131 3.869 15 N -0.725 5.725 16 C 0.531 3.469 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.215 0.785 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.403 0.597 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -23.212 -4.621 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.246 5.246 4 C 0.002 3.998 5 C -0.131 4.131 6 N -0.071 5.071 7 O 0.030 5.970 8 C -0.153 4.153 9 C -0.179 4.179 10 C -0.135 4.135 11 C -0.042 4.042 12 H 0.115 0.885 13 C -0.245 4.245 14 C 0.006 3.994 15 N -0.379 5.379 16 C 0.317 3.683 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.238 0.762 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.853 -22.712 -6.027 23.994 hybrid contribution -1.290 -0.550 1.742 2.236 sum 3.563 -23.262 -4.285 23.920 Atomic orbital electron populations 1.21797 0.94607 1.01807 1.02359 1.22175 0.96151 0.88565 1.01401 1.62161 1.13323 1.16628 1.32515 1.20382 0.89276 1.01862 0.88316 1.23257 1.02763 0.88974 0.98133 1.73805 1.18501 1.21323 0.93465 1.84778 1.66162 1.31145 1.14919 1.25768 1.04990 0.83641 1.00932 1.21388 1.05811 0.99146 0.91526 1.20120 1.03059 0.87009 1.03266 1.22061 1.00977 0.93476 0.87704 0.88516 1.22396 1.00836 1.01576 0.99697 1.21294 0.96773 0.91024 0.90309 1.45787 1.45916 1.11910 1.34300 1.20262 0.81273 0.81098 0.85691 1.90698 1.38590 1.56484 1.54099 1.23511 1.02742 1.06317 0.97585 1.85386 1.68749 0.94784 1.34554 1.22910 1.37092 0.96975 1.11217 0.90934 1.24979 0.95601 0.95144 0.97826 1.70030 1.40560 1.00888 1.38829 0.86145 0.79369 0.78430 0.81729 1.19617 1.20590 1.20609 0.92353 0.91569 0.92709 0.94447 0.90428 0.88131 0.92756 0.76862 0.90306 0.90995 0.90918 0.91912 0.91959 0.91217 0.91705 0.91272 0.76223 0.89657 0.89237 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.75 16 2 C 0.04 0.38 5.44 -3.83 -0.02 0.36 16 3 N -0.52 -4.60 4.00 -228.08 -0.91 -5.51 16 4 C 0.13 1.26 4.39 -4.97 -0.02 1.24 16 5 C 0.03 0.31 5.97 -82.10 -0.49 -0.18 16 6 N -0.37 -4.31 11.08 33.42 0.37 -3.94 16 7 O 0.10 1.02 11.20 17.18 0.19 1.22 16 8 C -0.07 -0.64 12.26 29.74 0.36 -0.27 16 9 C -0.17 -1.83 6.32 -104.42 -0.66 -2.49 16 10 C -0.08 -0.83 10.37 36.00 0.37 -0.45 16 11 C 0.07 0.54 2.32 -67.71 -0.16 0.38 16 12 H 0.10 0.74 6.28 -51.93 -0.33 0.41 16 13 C -0.19 -1.29 8.45 37.16 0.31 -0.98 16 14 C 0.13 1.42 4.91 -4.04 -0.02 1.40 16 15 N -0.72 -9.25 5.36 -60.29 -0.32 -9.57 16 16 C 0.53 9.48 7.84 -10.99 -0.09 9.39 16 17 O -0.52 -11.49 15.88 5.56 0.09 -11.40 16 18 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 19 S -0.06 -1.63 20.58 -107.50 -2.21 -3.84 16 20 C -0.53 -14.96 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 24 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.38 6.73 -51.93 -0.35 0.03 16 31 H 0.04 0.31 6.39 -51.93 -0.33 -0.02 16 32 H 0.08 0.80 6.24 -51.93 -0.32 0.48 16 33 H 0.10 1.02 5.70 -51.93 -0.30 0.72 16 34 H 0.05 0.51 6.83 -51.93 -0.35 0.16 16 35 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 39 H 0.06 0.45 6.55 -51.93 -0.34 0.11 16 40 H 0.06 0.42 6.58 -51.93 -0.34 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.76 6.56 -51.92 -0.34 0.42 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.40 4.47 8.27 -40.82 -0.34 4.14 16 45 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 46 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -33.89 394.45 -7.85 -41.75 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.09 Total: 2.17 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.38 Total: -7.79 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.13 Total: -44.18 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.28 Total: -10.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.89 -7.85 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.407 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds