Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.46862 * 2 1 4 4 C 1.46900 * 110.99788 * 168.52705 * 3 2 1 5 5 C 1.50705 * 109.47088 * 293.95748 * 4 3 2 6 6 N 1.30176 * 126.80135 * 90.03030 * 5 4 3 7 7 O 1.20917 * 111.60067 * 179.97438 * 6 5 4 8 8 C 1.34038 * 111.57255 * 359.97438 * 7 6 5 9 9 C 1.35456 * 106.44504 * 359.74652 * 8 7 6 10 10 C 1.50697 * 128.00796 * 180.24139 * 9 8 7 11 11 C 1.46901 * 111.00312 * 292.48115 * 3 2 1 12 12 H 1.08999 * 109.47035 * 49.26290 * 11 3 2 13 13 C 1.53003 * 109.46973 * 289.26416 * 11 3 2 14 14 C 1.53002 * 109.47044 * 169.26067 * 11 3 2 15 15 N 1.46497 * 109.47114 * 303.90173 * 14 11 3 16 16 C 1.34774 * 119.99610 * 175.04365 * 15 14 11 17 17 O 1.21279 * 120.00450 * 4.76423 * 16 15 14 18 18 C 1.50700 * 119.99871 * 184.76961 * 16 15 14 19 19 S 1.81004 * 109.47398 * 185.30055 * 18 16 15 20 20 C 1.76197 * 100.00202 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99737 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99990 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99945 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46931 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46828 * 119.99958 * 24 22 20 27 27 H 1.48497 * 109.46983 * 239.99876 * 24 22 20 28 28 H 1.09004 * 109.47304 * 187.33567 * 1 2 3 29 29 H 1.09002 * 109.47320 * 307.33336 * 1 2 3 30 30 H 1.08998 * 109.47573 * 67.33410 * 1 2 3 31 31 H 1.09001 * 109.47139 * 240.00397 * 2 1 3 32 32 H 1.08995 * 109.47277 * 120.00371 * 2 1 3 33 33 H 1.09001 * 109.47104 * 173.95743 * 4 3 2 34 34 H 1.09001 * 109.47422 * 53.95378 * 4 3 2 35 35 H 1.08000 * 126.78407 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46854 * 270.15720 * 10 9 8 37 37 H 1.08995 * 109.47222 * 30.16255 * 10 9 8 38 38 H 1.09006 * 109.47196 * 150.16616 * 10 9 8 39 39 H 1.08999 * 109.47137 * 299.99812 * 13 11 3 40 40 H 1.08990 * 109.47079 * 60.00007 * 13 11 3 41 41 H 1.09001 * 109.46390 * 180.02562 * 13 11 3 42 42 H 1.09008 * 109.46751 * 63.89777 * 14 11 3 43 43 H 1.08997 * 109.47254 * 183.89709 * 14 11 3 44 44 H 0.96993 * 120.00147 * 355.03711 * 15 14 11 45 45 H 1.08997 * 109.47583 * 305.30121 * 18 16 15 46 46 H 1.09005 * 109.47325 * 65.30176 * 18 16 15 47 47 H 0.97005 * 119.99562 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4622 1.4334 0.2728 5 6 3.7235 0.9606 1.6797 6 7 3.9577 -0.2619 2.0607 7 8 4.1304 -0.3305 3.2555 8 6 4.0308 0.8728 3.8377 9 6 3.7701 1.7581 2.8462 10 6 3.5719 3.2476 2.9606 11 6 1.7006 2.0562 -1.2672 12 1 0.6481 1.9024 -1.5049 13 6 2.5667 1.4727 -2.3854 14 6 1.9798 3.5547 -1.1350 15 7 1.2208 4.0950 -0.0044 16 6 1.3872 5.3800 0.3663 17 8 2.0990 6.1126 -0.2876 18 6 0.6889 5.9066 1.5936 19 16 0.9823 7.6869 1.7376 20 6 0.0803 8.0273 3.2124 21 1 -0.4342 7.2293 3.7271 22 6 0.0309 9.3211 3.7126 23 7 0.6584 10.2936 3.0856 24 14 -0.9248 9.6820 5.2766 25 1 -1.5346 8.4269 5.7847 26 1 -0.0049 10.2364 6.3020 27 1 -1.9951 10.6694 4.9859 28 1 -0.3634 -1.0193 0.1312 29 1 -0.3634 0.6232 0.8171 30 1 -0.3634 0.3960 -0.9483 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8189 2.4573 0.1614 34 1 3.9870 0.7872 -0.4309 35 1 4.1414 1.0937 4.8891 36 1 2.5161 3.4619 3.1268 37 1 4.1563 3.6287 3.7979 38 1 3.8996 3.7296 2.0394 39 1 3.6192 1.6265 -2.1477 40 1 2.3677 0.4052 -2.4796 41 1 2.3303 1.9711 -3.3256 42 1 3.0451 3.7122 -0.9658 43 1 1.6784 4.0627 -2.0510 44 1 0.5984 3.5280 0.4771 45 1 -0.3818 5.7204 1.5105 46 1 1.0779 5.4016 2.4778 47 1 0.6242 11.1977 3.4354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151954383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = 2.385672 kcal Electronic energy + Delta-G solvation = -28256.778044 eV Core-core repulsion = 24375.413101 eV Total energy + Delta-G solvation = -3881.364943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.88263 -40.82212 -39.66745 -36.13841 -35.37323 -34.54328 -33.34566 -32.92097 -31.15171 -30.58804 -28.95982 -27.70140 -27.17981 -26.75052 -23.73204 -22.67721 -22.27819 -21.57198 -20.45557 -19.71493 -18.63587 -18.43479 -17.69642 -17.40921 -17.18847 -16.84422 -16.39684 -16.18986 -15.91537 -15.68902 -15.30820 -14.62092 -14.57569 -14.37889 -14.27110 -14.17189 -14.09151 -13.74050 -13.62815 -13.39465 -13.11296 -13.10004 -13.05463 -12.99074 -12.87792 -12.56543 -12.53674 -12.42912 -12.01249 -11.94178 -11.66625 -11.56846 -11.12323 -10.93529 -10.85772 -10.23109 -10.20083 -9.95928 -9.37748 -8.60442 -8.31037 -6.07533 0.58712 1.20619 1.31804 1.43293 1.51037 1.61907 1.73488 2.29916 2.39998 2.42885 2.82451 3.03358 3.22781 3.38852 3.54540 3.72021 3.93164 3.99657 4.10663 4.15717 4.19615 4.26907 4.31178 4.35847 4.43554 4.53492 4.56738 4.58154 4.61205 4.75540 4.77872 4.80604 4.81360 4.88940 4.93947 4.99146 5.09347 5.11542 5.20645 5.34609 5.35942 5.46287 5.54903 5.94253 6.01912 6.24056 6.65511 7.10951 7.31953 7.37034 8.78210 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.003013 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.393812 B = 9291.688313 C =10556.030337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 N -0.524 5.524 4 C 0.133 3.867 5 C 0.021 3.979 6 N -0.386 5.386 7 O 0.089 5.911 8 C -0.053 4.053 9 C -0.198 4.198 10 C -0.070 4.070 11 C 0.077 3.923 12 H 0.111 0.889 13 C -0.182 4.182 14 C 0.130 3.870 15 N -0.698 5.698 16 C 0.535 3.465 17 O -0.569 6.569 18 C -0.127 4.127 19 S -0.147 6.147 20 C -0.543 4.543 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.415 0.585 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -25.182 -3.660 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.249 5.249 4 C 0.005 3.995 5 C -0.138 4.138 6 N -0.092 5.092 7 O 0.025 5.975 8 C -0.134 4.134 9 C -0.202 4.202 10 C -0.128 4.128 11 C -0.031 4.031 12 H 0.128 0.872 13 C -0.241 4.241 14 C 0.006 3.994 15 N -0.351 5.351 16 C 0.321 3.679 17 O -0.448 6.448 18 C -0.278 4.278 19 S 0.080 5.920 20 C -0.691 4.691 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.817 3.183 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.201 1.201 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.268 0.732 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.252 0.748 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.647 -24.751 -5.069 25.526 hybrid contribution -0.880 -0.061 1.402 1.657 sum 2.767 -24.812 -3.666 25.233 Atomic orbital electron populations 1.21765 0.93589 1.02207 1.02553 1.22127 0.96844 0.88018 1.00841 1.62146 1.12758 1.17100 1.32936 1.20324 0.89870 1.01318 0.87976 1.23495 1.02482 0.89007 0.98821 1.73805 1.19652 1.21743 0.94047 1.84754 1.66110 1.31909 1.14712 1.26427 1.02377 0.82473 1.02122 1.21458 1.07562 0.99151 0.92051 1.20010 1.02634 0.87294 1.02816 1.21989 1.01994 0.91266 0.87898 0.87162 1.22354 1.00257 1.02015 0.99438 1.21445 0.95959 0.92857 0.89143 1.45541 1.45229 1.10114 1.34224 1.19956 0.80706 0.82292 0.84949 1.90689 1.40740 1.58024 1.55383 1.23347 1.04134 1.00907 0.99425 1.85548 1.69560 1.01712 1.35187 1.23230 1.37003 0.97601 1.11288 0.90059 1.26069 0.96519 0.94839 1.01547 1.70189 1.42257 1.01437 1.40903 0.84957 0.77736 0.78692 0.76897 1.18042 1.19960 1.20113 0.91666 0.92375 0.91680 0.93829 0.92161 0.88924 0.92522 0.73218 0.91046 0.90019 0.92558 0.92336 0.91132 0.90356 0.92543 0.91314 0.74797 0.87908 0.87452 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.72 71.98 0.70 -1.14 16 2 C 0.05 0.76 5.44 86.30 0.47 1.23 16 3 N -0.52 -8.48 4.00 -875.51 -3.50 -11.98 16 4 C 0.13 2.50 4.39 85.56 0.38 2.87 16 5 C 0.02 0.45 5.97 43.58 0.26 0.71 16 6 N -0.39 -8.80 11.08 -49.57 -0.55 -9.35 16 7 O 0.09 1.80 11.20 71.66 0.80 2.60 16 8 C -0.05 -0.84 12.26 67.18 0.82 -0.02 16 9 C -0.20 -3.95 6.32 -19.73 -0.12 -4.07 16 10 C -0.07 -1.46 10.37 71.23 0.74 -0.72 16 11 C 0.08 1.09 2.32 44.92 0.10 1.20 16 12 H 0.11 1.35 6.28 -2.39 -0.01 1.33 16 13 C -0.18 -2.17 8.45 71.98 0.61 -1.56 16 14 C 0.13 2.68 4.91 86.38 0.42 3.10 16 15 N -0.70 -16.95 5.36 -463.06 -2.48 -19.43 16 16 C 0.54 18.96 7.84 87.66 0.69 19.64 16 17 O -0.57 -25.48 15.88 -3.03 -0.05 -25.53 16 18 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 19 S -0.15 -8.00 20.58 -56.49 -1.16 -9.17 16 20 C -0.54 -30.51 9.50 67.95 0.65 -29.86 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.84 5.49 84.86 0.47 1.31 16 23 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 24 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.70 6.73 -2.39 -0.02 0.68 16 31 H 0.04 0.62 6.39 -2.39 -0.02 0.61 16 32 H 0.06 1.18 6.24 -2.39 -0.01 1.17 16 33 H 0.09 1.87 5.70 -2.39 -0.01 1.86 16 34 H 0.06 1.02 6.83 -2.39 -0.02 1.01 16 35 H 0.25 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.34 7.65 -2.38 -0.02 1.32 16 39 H 0.06 0.77 6.55 -2.39 -0.02 0.75 16 40 H 0.07 0.77 6.58 -2.39 -0.02 0.75 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.31 6.56 -2.38 -0.02 1.29 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.42 8.33 8.27 -92.71 -0.77 7.56 16 45 H 0.10 3.61 8.14 -2.40 -0.02 3.59 16 46 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 47 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -75.34 394.45 2.22 -73.12 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.22 Total: 21.51 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 6.62 Total: -11.77 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -6.24 Total: -95.82 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.75 Total: -22.93 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.17 kcal Total: -75.34 2.22 -73.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.505 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds