Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36935 * 120.00364 * 275.73337 * 3 2 1 5 5 H 1.08000 * 119.99499 * 33.26961 * 4 3 2 6 6 C 1.38814 * 120.00114 * 213.26905 * 4 3 2 7 7 N 1.31618 * 119.99810 * 17.26958 * 6 4 3 8 8 Si 1.86795 * 120.00078 * 197.27038 * 6 4 3 9 9 H 1.48501 * 109.47111 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47296 * 120.00060 * 8 6 4 11 11 H 1.48496 * 109.47121 * 240.00404 * 8 6 4 12 12 C 1.46504 * 119.99551 * 95.73545 * 3 2 1 13 13 H 1.08999 * 109.47184 * 180.08574 * 12 3 2 14 14 C 1.53001 * 109.47651 * 60.08253 * 12 3 2 15 15 C 1.53002 * 109.47061 * 300.08087 * 12 3 2 16 16 N 1.46499 * 109.47504 * 305.00434 * 15 12 3 17 17 C 1.34771 * 120.00473 * 179.97438 * 16 15 12 18 18 O 1.21631 * 119.99730 * 359.97438 * 17 16 15 19 19 C 1.47267 * 120.00324 * 180.02562 * 17 16 15 20 20 C 1.35204 * 123.14192 * 180.02562 * 19 17 16 21 21 S 1.70950 * 108.82742 * 179.71584 * 20 19 17 22 22 C 1.70771 * 91.12375 * 0.33801 * 21 20 19 23 23 C 1.50707 * 124.71347 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46626 * 164.70108 * 23 22 21 25 25 C 1.53002 * 109.46948 * 284.69478 * 23 22 21 26 26 O 1.42894 * 109.47288 * 44.69719 * 23 22 21 27 27 C 1.42899 * 113.99813 * 149.99580 * 26 23 22 28 28 N 1.28643 * 110.56446 * 359.65332 * 22 21 20 29 29 H 1.09001 * 109.47044 * 59.99546 * 1 2 3 30 30 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47086 * 299.99544 * 1 2 3 32 32 H 1.09003 * 109.47318 * 240.00403 * 2 1 3 33 33 H 1.09006 * 109.47336 * 120.00096 * 2 1 3 34 34 H 0.96998 * 119.99976 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.46982 * 179.97438 * 14 12 3 36 36 H 1.08999 * 109.47089 * 300.00379 * 14 12 3 37 37 H 1.09003 * 109.46482 * 59.99586 * 14 12 3 38 38 H 1.08999 * 109.47216 * 185.00254 * 15 12 3 39 39 H 1.09006 * 109.46884 * 65.00540 * 15 12 3 40 40 H 0.96999 * 119.99562 * 359.97438 * 16 15 12 41 41 H 1.07999 * 125.58587 * 359.97438 * 20 19 17 42 42 H 1.08996 * 109.46816 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.47240 * 300.00170 * 25 23 22 44 44 H 1.09003 * 109.46973 * 60.00306 * 25 23 22 45 45 H 1.09003 * 109.46969 * 60.00584 * 27 26 23 46 46 H 1.09000 * 109.47478 * 179.97438 * 27 26 23 47 47 H 1.08998 * 109.47583 * 300.00382 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1501 2.9987 -1.3438 7 7 4.1871 2.9917 -0.5332 8 14 3.0446 4.2633 -2.7145 9 1 1.7882 4.0601 -3.4797 10 1 3.0524 5.6285 -2.1303 11 1 4.2088 4.1069 -3.6230 12 6 2.3820 2.0295 1.2625 13 1 2.7191 3.0470 1.0645 14 6 3.5077 1.2411 1.9350 15 6 1.1630 2.0668 2.1863 16 7 0.0467 2.7174 1.4960 17 6 -1.1389 2.8631 2.1202 18 8 -1.2821 2.4540 3.2566 19 6 -2.2612 3.5166 1.4259 20 6 -3.4762 3.6963 1.9913 21 16 -4.4929 4.4939 0.8721 22 6 -3.2411 4.5324 -0.2889 23 6 -3.3669 5.1288 -1.6672 24 1 -2.3740 5.2679 -2.0948 25 6 -4.1786 4.1865 -2.5584 26 8 -4.0297 6.3918 -1.5810 27 6 -3.6377 7.3239 -2.5908 28 7 -2.1739 3.9876 0.1791 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.8967 3.6430 -0.6479 35 1 3.7785 1.7237 2.8740 36 1 3.1707 0.2236 2.1329 37 1 4.3761 1.2146 1.2767 38 1 1.4080 2.6268 3.0888 39 1 0.8801 1.0491 2.4558 40 1 0.1608 3.0433 0.5895 41 1 -3.7569 3.3903 2.9882 42 1 -4.2692 4.6177 -3.5553 43 1 -3.6730 3.2231 -2.6241 44 1 -5.1715 4.0474 -2.1307 45 1 -3.8613 6.9098 -3.5740 46 1 -4.1856 8.2566 -2.4567 47 1 -2.5677 7.5162 -2.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153361612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = -17.523272 kcal Electronic energy + Delta-G solvation = -28854.233281 eV Core-core repulsion = 24972.005022 eV Total energy + Delta-G solvation = -3882.228259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35210 -38.84223 -38.04601 -36.80262 -33.62927 -32.66003 -31.83544 -31.02789 -29.69834 -28.15458 -27.12510 -26.54287 -24.92088 -23.90279 -23.10790 -21.64564 -21.00907 -19.64733 -19.22176 -18.43802 -16.94105 -16.56634 -16.42414 -16.16993 -15.65014 -15.18753 -15.07987 -14.75587 -14.40272 -14.10998 -13.69079 -13.63564 -13.20261 -13.09302 -12.91238 -12.66263 -12.53632 -12.28681 -12.05903 -11.93524 -11.88950 -11.78124 -11.47837 -11.29307 -11.03981 -10.91815 -10.79447 -10.66753 -10.25289 -10.13816 -10.05316 -9.83577 -9.65135 -9.62199 -9.60728 -9.40213 -8.95122 -8.48248 -8.32638 -6.63465 -5.84670 -3.32445 0.51962 1.21331 1.64475 2.08442 3.15570 3.32599 3.41625 3.42978 3.68508 3.82650 4.22350 4.45411 4.69769 4.85890 4.94983 5.08065 5.16936 5.23096 5.30045 5.34713 5.40641 5.43436 5.49305 5.51997 5.86820 5.88923 5.96351 6.09400 6.21076 6.28972 6.40907 6.51097 6.57490 6.65010 6.71615 6.76602 6.85815 6.95014 7.06642 7.20805 7.43630 7.52249 7.60769 7.81735 8.21549 8.47002 8.72019 9.19680 9.81173 10.38046 11.22196 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.004459 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.852399 B = 6278.299831 C = 8084.993402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.256 4.256 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.099 3.901 16 N -0.678 5.678 17 C 0.582 3.418 18 O -0.556 6.556 19 C 0.021 3.979 20 C -0.235 4.235 21 S 0.230 5.770 22 C 0.021 3.979 23 C 0.162 3.838 24 H 0.097 0.903 25 C -0.168 4.168 26 O -0.383 6.383 27 C 0.032 3.968 28 N -0.424 5.424 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.253 0.747 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.421 0.579 41 H 0.188 0.812 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.090 0.910 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 4.728 -1.050 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.385 4.385 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.026 4.026 16 N -0.328 5.328 17 C 0.364 3.636 18 O -0.436 6.436 19 C -0.115 4.115 20 C -0.378 4.378 21 S 0.487 5.513 22 C -0.259 4.259 23 C 0.101 3.899 24 H 0.115 0.885 25 C -0.227 4.227 26 O -0.302 6.302 27 C -0.065 4.065 28 N -0.140 5.140 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.259 0.741 41 H 0.206 0.794 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.071 4.898 -0.466 17.766 hybrid contribution 1.078 0.358 -0.841 1.414 sum -15.993 5.255 -1.307 16.885 Atomic orbital electron populations 1.22440 1.00054 0.98815 1.01590 1.20748 0.91630 0.87412 0.98692 1.43880 1.75902 1.08293 1.02283 1.19104 1.08264 1.17937 0.93241 0.91891 1.25127 0.94592 1.01343 0.97860 1.70011 1.07913 1.35978 1.39613 0.86344 0.77494 0.81747 0.81930 1.20164 1.21614 1.21810 1.20497 0.88801 0.99615 0.84193 0.88215 1.22017 1.01097 0.97929 0.99243 1.22268 0.88086 0.96333 0.95932 1.45863 1.10120 1.57310 1.19497 1.17082 0.82008 0.79296 0.85201 1.90760 1.83275 1.51657 1.17863 1.20559 0.95672 1.04811 0.90449 1.26696 0.97790 1.06099 1.07185 1.82746 1.15853 1.49145 1.03527 1.26716 0.93123 1.04334 1.01708 1.20321 0.97999 0.83997 0.87627 0.88524 1.22287 1.00831 0.99980 0.99573 1.87869 1.65392 1.23407 1.53500 1.22853 1.00349 0.92515 0.90763 1.66899 1.26441 1.10135 1.10563 0.93436 0.94960 0.93120 0.94107 0.94512 0.93688 0.94823 0.95126 0.90239 0.92726 0.92591 0.74081 0.79438 0.91053 0.90444 0.91428 0.93560 0.89204 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.87 37.16 0.37 -2.86 16 2 C 0.14 2.94 5.67 -4.04 -0.02 2.92 16 3 N -0.58 -13.45 1.85 -165.66 -0.31 -13.75 16 4 C -0.26 -6.51 9.26 -15.06 -0.14 -6.65 16 5 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 6 C 0.01 0.27 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -24.04 10.60 55.49 0.59 -23.45 16 8 Si 0.89 20.74 29.59 -169.99 -5.03 15.71 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.18 3.89 1.92 -67.93 -0.13 3.76 16 13 H 0.10 2.51 6.04 -51.93 -0.31 2.20 16 14 C -0.14 -2.98 9.05 37.16 0.34 -2.65 16 15 C 0.10 2.00 4.34 -4.04 -0.02 1.98 16 16 N -0.68 -13.60 3.98 -61.43 -0.24 -13.85 16 17 C 0.58 11.39 7.56 -12.59 -0.10 11.29 16 18 O -0.56 -11.85 16.71 5.25 0.09 -11.76 16 19 C 0.02 0.35 6.70 -84.53 -0.57 -0.21 16 20 C -0.24 -3.28 10.62 29.65 0.31 -2.97 16 21 S 0.23 2.61 22.73 -107.50 -2.44 0.16 16 22 C 0.02 0.28 6.30 -13.61 -0.09 0.20 16 23 C 0.16 1.87 3.23 -27.88 -0.09 1.78 16 24 H 0.10 1.17 7.79 -51.93 -0.40 0.77 16 25 C -0.17 -1.57 9.51 37.16 0.35 -1.22 16 26 O -0.38 -4.15 10.16 -35.23 -0.36 -4.51 16 27 C 0.03 0.25 10.82 101.05 1.09 1.35 16 28 N -0.42 -7.08 10.12 -8.51 -0.09 -7.17 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.00 4.99 -51.93 -0.26 0.74 16 32 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.04 0.73 6.45 -51.93 -0.33 0.40 16 34 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 37 H 0.08 1.87 7.40 -51.93 -0.38 1.48 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.14 7.05 -51.93 -0.37 0.77 16 40 H 0.42 8.95 7.42 -40.82 -0.30 8.65 16 41 H 0.19 2.34 8.03 -52.49 -0.42 1.92 16 42 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -29.25 393.70 -7.92 -37.18 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.30 Total: 8.60 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 1.23 Total: 6.91 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.05 Total: -58.22 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.27 Total: -16.27 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.44 Total: 0.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.25 -7.92 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153361612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.654 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds