Wall clock time and date at job start Sat Apr 11 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 C 1.34777 * 120.00341 * 180.02562 * 3 2 1 5 5 O 1.21553 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.47865 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.40065 * 120.09295 * 179.97438 * 6 4 3 8 8 C 1.38296 * 117.99326 * 179.97438 * 7 6 4 9 9 C 1.39596 * 118.02285 * 359.97438 * 8 7 6 10 10 N 1.38512 * 120.04564 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99609 * 7.99898 * 10 9 8 12 12 C 1.50696 * 109.47700 * 274.64410 * 11 10 9 13 13 H 1.08000 * 119.99714 * 355.14861 * 12 11 10 14 14 C 1.37871 * 120.00282 * 175.14244 * 12 11 10 15 15 N 1.31515 * 119.99786 * 185.07095 * 14 12 11 16 16 Si 1.86796 * 120.00039 * 5.07992 * 14 12 11 17 17 H 1.48499 * 109.47380 * 84.79280 * 16 14 12 18 18 H 1.48507 * 109.46994 * 204.79521 * 16 14 12 19 19 H 1.48500 * 109.47064 * 324.79089 * 16 14 12 20 20 C 1.46497 * 120.00366 * 187.99995 * 10 9 8 21 21 C 1.50702 * 109.46973 * 270.00261 * 20 10 9 22 22 C 1.38670 * 120.41729 * 269.71964 * 21 20 10 23 23 C 1.38626 * 118.42008 * 179.78654 * 22 21 20 24 24 C 1.38230 * 119.16284 * 0.51202 * 23 22 21 25 25 N 1.31858 * 120.75782 * 359.72149 * 24 23 22 26 26 C 1.31885 * 121.72674 * 0.02562 * 25 24 23 27 27 N 1.32856 * 119.90891 * 0.25974 * 9 8 7 28 28 N 1.28361 * 122.15769 * 359.46278 * 27 9 8 29 29 H 1.08996 * 109.47027 * 60.00034 * 1 2 3 30 30 H 1.08997 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46778 * 299.99994 * 1 2 3 32 32 H 1.08997 * 109.47224 * 239.99862 * 2 1 3 33 33 H 1.09002 * 109.47412 * 119.99783 * 2 1 3 34 34 H 0.97007 * 119.99928 * 359.97438 * 3 2 1 35 35 H 1.08001 * 121.00867 * 359.95128 * 7 6 4 36 36 H 1.07997 * 120.98814 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.46844 * 154.64396 * 11 10 9 38 38 H 1.09001 * 109.47523 * 34.64899 * 11 10 9 39 39 H 0.97004 * 120.00090 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.46731 * 29.99995 * 20 10 9 41 41 H 1.09000 * 109.47191 * 150.00114 * 20 10 9 42 42 H 1.08005 * 120.79244 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.42192 * 180.21763 * 23 22 21 44 44 H 1.07993 * 119.62340 * 179.74932 * 24 23 22 45 45 H 1.08003 * 119.61286 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1333 0.7036 -0.0005 6 6 3.8363 3.0216 0.0001 7 6 5.2129 3.2798 0.0001 8 6 5.6258 4.5997 0.0001 9 6 4.6455 5.5935 -0.0005 10 7 5.0121 6.9293 0.0000 11 6 6.4177 7.3031 -0.1754 12 6 7.1173 7.2677 1.1588 13 1 6.5538 7.0710 2.0589 14 6 8.4767 7.4863 1.2305 15 7 9.1038 7.3573 2.3792 16 14 9.4277 7.9660 -0.3041 17 1 9.3413 9.4353 -0.5010 18 1 10.8506 7.5702 -0.1485 19 1 8.8474 7.2736 -1.4827 20 6 3.9943 7.9682 0.1760 21 6 3.4557 8.3770 -1.1708 22 6 4.0464 9.4132 -1.8781 23 6 3.5200 9.7518 -3.1150 24 6 2.4249 9.0574 -3.5941 25 7 1.8859 8.0804 -2.8915 26 6 2.3633 7.7280 -1.7137 27 7 3.3604 5.2565 0.0042 28 7 2.9752 4.0320 -0.0008 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 5.9304 2.4726 0.0004 36 1 6.6754 4.8540 -0.0004 37 1 6.4770 8.3094 -0.5902 38 1 6.8983 6.6006 -0.8564 39 1 10.0602 7.5114 2.4298 40 1 3.1815 7.5802 0.7899 41 1 4.4395 8.8335 0.6672 42 1 4.8987 9.9413 -1.4767 43 1 3.9569 10.5512 -3.6950 44 1 2.0063 9.3177 -4.5549 45 1 1.8948 6.9228 -1.1671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:17 Heat of formation + Delta-G solvation = 65.362050 kcal Electronic energy + Delta-G solvation = -28963.037160 eV Core-core repulsion = 24981.251877 eV Total energy + Delta-G solvation = -3981.785282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.79891 -40.02541 -39.16857 -36.93734 -35.33288 -33.31840 -32.77542 -32.53507 -31.75573 -31.15476 -30.05803 -28.39310 -26.15035 -24.85011 -23.60235 -23.42654 -22.86650 -22.20212 -21.13257 -20.52993 -18.14190 -17.29180 -17.08802 -17.04952 -16.72372 -16.01872 -15.79529 -15.67824 -15.32354 -14.73536 -14.66466 -14.37828 -14.19876 -13.78434 -13.71999 -13.50240 -13.27011 -12.97276 -12.95175 -12.67160 -12.60882 -12.20099 -11.99732 -11.85904 -11.80848 -11.63890 -11.44642 -11.15537 -10.80436 -10.67953 -10.06750 -9.92695 -9.83627 -9.75409 -9.68845 -9.39369 -9.27953 -9.09007 -8.90081 -8.88068 -7.35831 -6.37396 -4.41159 1.04950 1.18061 1.28486 1.38106 2.97623 3.05214 3.11043 3.13409 3.16708 3.32596 3.97013 4.10492 4.11436 4.41267 4.55718 4.81259 4.83970 4.89448 4.93392 4.94932 5.00144 5.04812 5.12558 5.15237 5.17452 5.22990 5.43277 5.47428 5.62035 5.72002 5.74432 5.85820 5.90856 5.96830 5.98906 6.16952 6.25294 6.30823 6.41129 6.42958 6.45228 6.52704 6.82226 7.21417 7.37641 7.53426 7.66725 8.07885 8.17869 8.23436 8.68149 9.05644 9.20022 10.74668 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.003970 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.374222 B = 7051.176293 C = 9882.582567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.719 5.719 4 C 0.590 3.410 5 O -0.543 6.543 6 C -0.059 4.059 7 C -0.036 4.036 8 C -0.165 4.165 9 C 0.373 3.627 10 N -0.556 5.556 11 C 0.219 3.781 12 C -0.549 4.549 13 H 0.081 0.919 14 C 0.081 3.919 15 N -0.883 5.883 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.167 3.833 21 C -0.151 4.151 22 C -0.063 4.063 23 C -0.181 4.181 24 C 0.091 3.909 25 N -0.491 5.491 26 C 0.122 3.878 27 N -0.320 5.320 28 N -0.173 5.173 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 -2.745 -7.901 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.372 5.372 4 C 0.375 3.625 5 O -0.419 6.419 6 C -0.211 4.211 7 C -0.064 4.064 8 C -0.198 4.198 9 C 0.132 3.868 10 N -0.262 5.262 11 C 0.098 3.902 12 C -0.587 4.587 13 H 0.099 0.901 14 C -0.124 4.124 15 N -0.519 5.519 16 Si 0.694 3.306 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.190 1.190 20 C 0.043 3.957 21 C -0.154 4.154 22 C -0.089 4.089 23 C -0.200 4.200 24 C -0.066 4.066 25 N -0.200 5.200 26 C -0.035 4.035 27 N -0.177 5.177 28 N -0.021 5.021 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.706 -3.138 -8.124 17.092 hybrid contribution 2.800 0.772 -0.365 2.927 sum -11.906 -2.367 -8.489 14.813 Atomic orbital electron populations 1.22005 0.94410 1.03027 1.02829 1.21306 0.94280 0.82978 1.02369 1.45862 1.07074 1.09170 1.75064 1.17559 0.82310 0.86937 0.75707 1.90763 1.55679 1.44810 1.50678 1.22015 0.92724 0.94467 1.11922 1.22031 0.95283 0.97285 0.91799 1.22078 1.02409 0.91394 1.03877 1.20118 0.91212 0.87168 0.88328 1.46709 1.08515 1.00093 1.70885 1.19893 0.75792 0.96199 0.98270 1.21324 0.93331 1.51249 0.92771 0.90084 1.24848 0.97269 0.94364 0.95950 1.69881 1.09971 1.47252 1.24829 0.87010 0.80131 0.79762 0.83681 1.19661 1.20655 1.18957 1.20290 0.91705 0.91796 0.91907 1.21443 0.97458 0.97058 0.99473 1.21617 0.98122 0.95341 0.93856 1.22094 0.98641 1.02123 0.97189 1.22734 0.93094 0.91745 0.99013 1.67751 1.30786 1.14292 1.07124 1.22999 0.92563 0.96985 0.90943 1.72953 1.13213 1.09677 1.21856 1.72726 1.31022 0.94430 1.03905 0.91821 0.90901 0.91805 0.91509 0.91458 0.75311 0.83018 0.81870 0.94659 0.94821 0.92081 0.88936 0.88797 0.84764 0.85118 0.83270 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.03 37.16 0.37 -0.75 16 2 C 0.11 1.12 6.39 -4.04 -0.03 1.10 16 3 N -0.72 -8.80 5.55 -61.25 -0.34 -9.14 16 4 C 0.59 9.26 7.80 -12.32 -0.10 9.17 16 5 O -0.54 -9.82 16.38 5.32 0.09 -9.73 16 6 C -0.06 -0.99 6.83 -82.85 -0.57 -1.55 16 7 C -0.04 -0.60 9.71 -38.88 -0.38 -0.98 16 8 C -0.16 -3.00 9.09 -39.05 -0.36 -3.35 16 9 C 0.37 6.88 7.39 -154.93 -1.15 5.73 16 10 N -0.56 -10.12 2.55 -176.46 -0.45 -10.57 16 11 C 0.22 4.43 3.88 -5.20 -0.02 4.41 16 12 C -0.55 -13.38 9.33 -34.44 -0.32 -13.71 16 13 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 14 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.88 -24.50 13.96 55.43 0.77 -23.73 16 16 Si 0.87 18.73 27.47 -169.99 -4.67 14.06 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.26 -5.44 6.58 56.52 0.37 -5.07 16 20 C 0.17 2.58 5.50 -5.19 -0.03 2.55 16 21 C -0.15 -2.19 5.48 -104.48 -0.57 -2.76 16 22 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 23 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 24 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 25 N -0.49 -7.35 10.36 -13.25 -0.14 -7.49 16 26 C 0.12 1.84 10.66 -17.55 -0.19 1.65 16 27 N -0.32 -5.60 9.22 31.21 0.29 -5.31 16 28 N -0.17 -2.88 10.73 33.32 0.36 -2.52 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.41 4.53 7.82 -40.82 -0.32 4.21 16 35 H 0.15 2.34 7.71 -52.49 -0.40 1.94 16 36 H 0.16 3.09 6.23 -52.49 -0.33 2.76 16 37 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 38 H 0.03 0.69 5.82 -51.93 -0.30 0.39 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.09 1.38 7.46 -51.93 -0.39 1.00 16 41 H 0.09 1.40 8.02 -51.93 -0.42 0.98 16 42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.17 2.50 7.08 -52.48 -0.37 2.13 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -29.96 384.71 -8.59 -38.55 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.89 Total: 9.42 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.40 Total: 0.66 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.49 Total: -58.76 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.67 Total: 14.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.96 -8.59 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.912 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds