Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 C 1.34777 * 120.00341 * 180.02562 * 3 2 1 5 5 O 1.21553 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.47865 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.40065 * 120.09295 * 179.97438 * 6 4 3 8 8 C 1.38296 * 117.99326 * 179.97438 * 7 6 4 9 9 C 1.39596 * 118.02285 * 359.97438 * 8 7 6 10 10 N 1.38512 * 120.04564 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99609 * 7.99898 * 10 9 8 12 12 C 1.50696 * 109.47700 * 274.64410 * 11 10 9 13 13 H 1.08000 * 119.99714 * 355.14861 * 12 11 10 14 14 C 1.37871 * 120.00282 * 175.14244 * 12 11 10 15 15 N 1.31515 * 119.99786 * 185.07095 * 14 12 11 16 16 Si 1.86796 * 120.00039 * 5.07992 * 14 12 11 17 17 H 1.48499 * 109.47380 * 84.79280 * 16 14 12 18 18 H 1.48507 * 109.46994 * 204.79521 * 16 14 12 19 19 H 1.48500 * 109.47064 * 324.79089 * 16 14 12 20 20 C 1.46497 * 120.00366 * 187.99995 * 10 9 8 21 21 C 1.50702 * 109.46973 * 270.00261 * 20 10 9 22 22 C 1.38670 * 120.41729 * 269.71964 * 21 20 10 23 23 C 1.38626 * 118.42008 * 179.78654 * 22 21 20 24 24 C 1.38230 * 119.16284 * 0.51202 * 23 22 21 25 25 N 1.31858 * 120.75782 * 359.72149 * 24 23 22 26 26 C 1.31885 * 121.72674 * 0.02562 * 25 24 23 27 27 N 1.32856 * 119.90891 * 0.25974 * 9 8 7 28 28 N 1.28361 * 122.15769 * 359.46278 * 27 9 8 29 29 H 1.08996 * 109.47027 * 60.00034 * 1 2 3 30 30 H 1.08997 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46778 * 299.99994 * 1 2 3 32 32 H 1.08997 * 109.47224 * 239.99862 * 2 1 3 33 33 H 1.09002 * 109.47412 * 119.99783 * 2 1 3 34 34 H 0.97007 * 119.99928 * 359.97438 * 3 2 1 35 35 H 1.08001 * 121.00867 * 359.95128 * 7 6 4 36 36 H 1.07997 * 120.98814 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.46844 * 154.64396 * 11 10 9 38 38 H 1.09001 * 109.47523 * 34.64899 * 11 10 9 39 39 H 0.97004 * 120.00090 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.46731 * 29.99995 * 20 10 9 41 41 H 1.09000 * 109.47191 * 150.00114 * 20 10 9 42 42 H 1.08005 * 120.79244 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.42192 * 180.21763 * 23 22 21 44 44 H 1.07993 * 119.62340 * 179.74932 * 24 23 22 45 45 H 1.08003 * 119.61286 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1333 0.7036 -0.0005 6 6 3.8363 3.0216 0.0001 7 6 5.2129 3.2798 0.0001 8 6 5.6258 4.5997 0.0001 9 6 4.6455 5.5935 -0.0005 10 7 5.0121 6.9293 0.0000 11 6 6.4177 7.3031 -0.1754 12 6 7.1173 7.2677 1.1588 13 1 6.5538 7.0710 2.0589 14 6 8.4767 7.4863 1.2305 15 7 9.1038 7.3573 2.3792 16 14 9.4277 7.9660 -0.3041 17 1 9.3413 9.4353 -0.5010 18 1 10.8506 7.5702 -0.1485 19 1 8.8474 7.2736 -1.4827 20 6 3.9943 7.9682 0.1760 21 6 3.4557 8.3770 -1.1708 22 6 4.0464 9.4132 -1.8781 23 6 3.5200 9.7518 -3.1150 24 6 2.4249 9.0574 -3.5941 25 7 1.8859 8.0804 -2.8915 26 6 2.3633 7.7280 -1.7137 27 7 3.3604 5.2565 0.0042 28 7 2.9752 4.0320 -0.0008 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 5.9304 2.4726 0.0004 36 1 6.6754 4.8540 -0.0004 37 1 6.4770 8.3094 -0.5902 38 1 6.8983 6.6006 -0.8564 39 1 10.0602 7.5114 2.4298 40 1 3.1815 7.5802 0.7899 41 1 4.4395 8.8335 0.6672 42 1 4.8987 9.9413 -1.4767 43 1 3.9569 10.5512 -3.6950 44 1 2.0063 9.3177 -4.5549 45 1 1.8948 6.9228 -1.1671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = 46.827901 kcal Electronic energy + Delta-G solvation = -28963.840861 eV Core-core repulsion = 24981.251877 eV Total energy + Delta-G solvation = -3982.588983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15554 -41.08707 -40.40214 -38.32970 -36.37127 -34.96404 -34.25023 -33.81846 -32.83053 -32.38892 -31.16059 -29.88035 -27.41221 -26.28314 -24.93262 -24.44963 -24.02360 -23.38731 -22.33176 -21.86564 -19.39473 -19.12895 -18.47535 -18.27781 -17.86631 -17.11307 -16.94062 -16.83814 -16.55877 -16.24625 -15.78599 -15.66585 -15.61843 -15.09030 -14.83090 -14.68891 -14.43842 -14.37939 -14.25091 -13.94078 -13.67809 -13.34840 -13.29592 -13.13158 -12.88447 -12.65180 -12.57014 -12.37076 -12.35485 -12.18307 -11.80336 -11.44431 -11.23312 -11.21519 -10.81977 -10.81416 -10.67475 -10.37605 -10.14714 -9.94595 -8.79732 -8.33368 -6.41462 -0.31761 -0.12120 0.14947 0.36802 1.37196 1.39332 1.46631 1.66631 1.87420 2.10762 2.30250 2.72848 2.90870 2.99905 3.14944 3.48203 3.61106 3.65383 3.83340 3.91055 3.92525 4.07244 4.10443 4.15065 4.16079 4.25503 4.42067 4.54346 4.55229 4.65308 4.72221 4.77219 4.80779 4.89690 4.94740 4.97241 5.06794 5.08445 5.22311 5.29760 5.36727 5.37270 5.42315 5.80900 5.86285 6.23819 6.29230 6.42526 6.65700 7.06164 7.06861 7.23271 7.65924 8.82377 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.003970 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.374222 B = 7051.176293 C = 9882.582567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.704 5.704 4 C 0.588 3.412 5 O -0.571 6.571 6 C -0.061 4.061 7 C -0.032 4.032 8 C -0.179 4.179 9 C 0.361 3.639 10 N -0.561 5.561 11 C 0.229 3.771 12 C -0.540 4.540 13 H 0.035 0.965 14 C 0.025 3.975 15 N -0.938 5.938 16 Si 0.935 3.065 17 H -0.257 1.257 18 H -0.288 1.288 19 H -0.244 1.244 20 C 0.169 3.831 21 C -0.159 4.159 22 C -0.071 4.071 23 C -0.171 4.171 24 C 0.087 3.913 25 N -0.515 5.515 26 C 0.110 3.890 27 N -0.318 5.318 28 N -0.169 5.169 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.417 0.583 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.146 0.854 43 H 0.166 0.834 44 H 0.181 0.819 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 -2.039 -10.496 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.356 5.356 4 C 0.372 3.628 5 O -0.449 6.449 6 C -0.213 4.213 7 C -0.060 4.060 8 C -0.212 4.212 9 C 0.120 3.880 10 N -0.268 5.268 11 C 0.108 3.892 12 C -0.579 4.579 13 H 0.053 0.947 14 C -0.175 4.175 15 N -0.577 5.577 16 Si 0.758 3.242 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.167 1.167 20 C 0.046 3.954 21 C -0.162 4.162 22 C -0.097 4.097 23 C -0.190 4.190 24 C -0.070 4.070 25 N -0.224 5.224 26 C -0.047 4.047 27 N -0.174 5.174 28 N -0.016 5.016 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.164 0.836 43 H 0.183 0.817 44 H 0.198 0.802 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.860 -2.428 -10.728 19.301 hybrid contribution 2.995 0.497 0.479 3.073 sum -12.865 -1.931 -10.249 16.561 Atomic orbital electron populations 1.21974 0.91719 1.04432 1.03280 1.21534 0.96448 0.81297 1.02126 1.45908 1.05942 1.10691 1.73080 1.17477 0.83295 0.86072 0.75957 1.90749 1.56565 1.45219 1.52398 1.22250 0.92677 0.95115 1.11280 1.22188 0.95868 0.97091 0.90861 1.22049 1.01952 0.92119 1.05110 1.20253 0.91562 0.87408 0.88777 1.46668 1.08265 1.00575 1.71246 1.19655 0.76634 0.97224 0.95727 1.21447 0.93290 1.49907 0.93214 0.94702 1.25709 0.98388 0.94337 0.99087 1.70045 1.10307 1.49657 1.27660 0.85929 0.77953 0.80227 0.80112 1.18131 1.21442 1.16705 1.20340 0.91015 0.91115 0.92959 1.21267 0.97843 0.98067 0.99029 1.21865 0.98467 0.94918 0.94460 1.22454 0.97803 1.02215 0.96527 1.23320 0.93100 0.90745 0.99787 1.67745 1.31694 1.15641 1.07307 1.22860 0.93099 0.97289 0.91417 1.72978 1.12726 1.09993 1.21740 1.72713 1.30902 0.94270 1.03749 0.91305 0.89020 0.91384 0.91667 0.91799 0.74522 0.81836 0.82918 0.92618 0.94509 0.92201 0.89112 0.88518 0.83582 0.81673 0.80196 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.03 71.98 0.72 -1.05 16 2 C 0.11 1.99 6.39 86.38 0.55 2.54 16 3 N -0.70 -16.55 5.55 -465.96 -2.58 -19.13 16 4 C 0.59 18.21 7.80 86.79 0.68 18.88 16 5 O -0.57 -20.53 16.38 -3.88 -0.06 -20.60 16 6 C -0.06 -2.03 6.83 42.00 0.29 -1.74 16 7 C -0.03 -1.09 9.71 22.73 0.22 -0.87 16 8 C -0.18 -6.65 9.09 22.61 0.21 -6.44 16 9 C 0.36 13.46 7.39 133.21 0.99 14.44 16 10 N -0.56 -20.45 2.55 -712.21 -1.81 -22.27 16 11 C 0.23 9.11 3.88 85.63 0.33 9.45 16 12 C -0.54 -26.93 9.33 25.60 0.24 -26.69 16 13 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 14 C 0.02 1.27 5.47 84.65 0.46 1.73 16 15 N -0.94 -53.74 13.96 21.45 0.30 -53.45 16 16 Si 0.93 38.01 27.47 68.60 1.88 39.89 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.24 -9.00 6.58 99.48 0.65 -8.34 16 20 C 0.17 5.20 5.50 85.63 0.47 5.67 16 21 C -0.16 -4.44 5.48 -19.78 -0.11 -4.55 16 22 C -0.07 -1.69 9.86 22.47 0.22 -1.46 16 23 C -0.17 -3.38 10.11 22.36 0.23 -3.16 16 24 C 0.09 1.92 11.18 84.69 0.95 2.86 16 25 N -0.51 -14.64 10.36 -195.85 -2.03 -16.67 16 26 C 0.11 3.24 10.66 84.67 0.90 4.14 16 27 N -0.32 -11.17 9.22 -55.17 -0.51 -11.67 16 28 N -0.17 -5.58 10.73 -48.50 -0.52 -6.10 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.42 8.70 7.82 -92.70 -0.72 7.97 16 35 H 0.16 5.08 7.71 -2.91 -0.02 5.06 16 36 H 0.15 5.94 6.23 -2.91 -0.02 5.93 16 37 H 0.06 2.02 7.57 -2.38 -0.02 2.00 16 38 H 0.04 1.46 5.82 -2.39 -0.01 1.45 16 39 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.09 2.77 7.46 -2.39 -0.02 2.76 16 41 H 0.10 2.86 8.02 -2.39 -0.02 2.84 16 42 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.16 4.73 7.08 -2.91 -0.02 4.71 16 Total: -1.00 -66.44 384.71 2.26 -64.18 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.25 Total: 32.06 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 7.34 Total: 13.75 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -7.16 Total: -129.29 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.60 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.88 Total: 39.89 kcal Total: -66.44 2.26 -64.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.008 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds