Wall clock time and date at job start Sat Apr 11 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47963 * 111.00165 * 2 1 4 4 C 1.53933 * 86.18416 * 222.42172 * 3 2 1 5 5 C 1.52996 * 113.73562 * 138.07781 * 4 3 2 6 6 N 1.46500 * 109.47487 * 176.89846 * 5 4 3 7 7 C 1.38593 * 120.00241 * 180.02562 * 6 5 4 8 8 N 1.31735 * 119.80261 * 359.97438 * 7 6 5 9 9 C 1.34061 * 119.78003 * 180.02562 * 8 7 6 10 10 C 1.40423 * 120.86061 * 180.02562 * 9 8 7 11 11 C 1.36202 * 119.75927 * 179.97438 * 10 9 8 12 12 C 1.39295 * 120.91998 * 0.02562 * 11 10 9 13 13 C 1.36164 * 120.91629 * 359.97438 * 12 11 10 14 14 C 1.40508 * 119.75720 * 0.02562 * 13 12 11 15 15 N 1.33965 * 120.87647 * 180.02562 * 14 13 12 16 16 C 1.31740 * 119.80575 * 179.97438 * 15 14 13 17 17 N 1.38733 * 119.79767 * 180.02562 * 16 15 14 18 18 C 1.34772 * 120.00153 * 359.97438 * 17 16 15 19 19 O 1.21732 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.46142 * 119.99954 * 180.02562 * 18 17 16 21 21 H 1.08001 * 120.00469 * 359.97438 * 20 18 17 22 22 C 1.40143 * 119.99902 * 179.97438 * 20 18 17 23 23 N 1.30631 * 119.99852 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 119.99761 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46925 * 90.00148 * 24 22 20 26 26 H 1.48497 * 109.47193 * 209.99781 * 24 22 20 27 27 H 1.48493 * 109.47390 * 330.00110 * 24 22 20 28 28 C 1.48195 * 111.06994 * 260.57015 * 2 1 3 29 29 H 1.08999 * 109.46834 * 59.99704 * 1 2 3 30 30 H 1.08994 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46734 * 299.99777 * 1 2 3 32 32 H 1.08998 * 113.75475 * 108.09798 * 3 2 1 33 33 H 1.09001 * 113.85756 * 336.75235 * 3 2 1 34 34 H 1.08998 * 113.73032 * 269.25630 * 4 3 2 35 35 H 1.09000 * 109.47006 * 56.90054 * 5 4 3 36 36 H 1.09000 * 109.47426 * 296.90477 * 5 4 3 37 37 H 0.96998 * 119.99726 * 0.02562 * 6 5 4 38 38 H 1.07993 * 120.11929 * 359.95741 * 10 9 8 39 39 H 1.07994 * 119.54043 * 180.28183 * 11 10 9 40 40 H 1.08003 * 119.53817 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.12326 * 180.02562 * 13 12 11 42 42 H 0.97008 * 119.99759 * 179.97438 * 17 16 15 43 43 H 0.96996 * 119.99691 * 180.02562 * 23 22 20 44 44 H 1.09009 * 113.75364 * 23.23762 * 28 2 1 45 45 H 1.08998 * 113.83019 * 251.81400 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8794 -1.0361 5 6 3.2610 1.8571 -2.1882 6 7 4.2977 1.3226 -3.0746 7 6 4.6878 2.0384 -4.1954 8 7 4.1234 3.1988 -4.4603 9 6 4.5007 3.8906 -5.5449 10 6 3.9147 5.1301 -5.8485 11 6 4.3154 5.8142 -6.9560 12 6 5.3012 5.3016 -7.7961 13 6 5.8911 4.1031 -7.5326 14 6 5.5032 3.3691 -6.3990 15 7 6.0691 2.1877 -6.1181 16 6 5.6896 1.5175 -5.0493 17 7 6.2761 0.2944 -4.7583 18 6 7.2306 -0.2050 -5.5682 19 8 7.5778 0.4170 -6.5553 20 6 7.8480 -1.4937 -5.2619 21 1 7.5397 -2.0457 -4.3863 22 6 8.8401 -2.0132 -6.1043 23 7 9.2127 -1.3458 -7.1637 24 14 9.6298 -3.6601 -5.7124 25 1 8.8564 -4.7474 -6.3643 26 1 11.0255 -3.6729 -6.2192 27 1 9.6350 -3.8692 -4.2423 28 6 2.0018 -0.2266 -1.3642 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.4460 1.6802 0.9483 33 1 1.3022 2.1212 -0.3935 34 1 3.9458 0.5069 -0.5954 35 1 3.5852 2.8177 -1.7879 36 1 2.3364 1.9910 -2.7497 37 1 4.7111 0.4676 -2.8770 38 1 3.1488 5.5392 -5.2064 39 1 3.8656 6.7692 -7.1837 40 1 5.6017 5.8628 -8.6687 41 1 6.6545 3.7179 -8.1925 42 1 5.9992 -0.2014 -3.9718 43 1 9.8991 -1.7055 -7.7469 44 1 1.3042 0.0406 -2.1580 45 1 2.4505 -1.2100 -1.5040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170254241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:31 Heat of formation + Delta-G solvation = 90.508071 kcal Electronic energy + Delta-G solvation = -28866.431680 eV Core-core repulsion = 24885.736811 eV Total energy + Delta-G solvation = -3980.694869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93188 -40.22708 -38.24268 -37.03420 -35.38983 -34.05580 -32.97578 -32.45519 -31.25141 -29.62361 -28.96034 -26.85256 -26.55625 -26.41096 -24.01281 -23.03211 -22.37465 -21.66265 -20.41297 -20.03763 -18.65362 -18.25994 -17.03011 -16.64013 -16.28824 -15.75723 -15.54246 -15.39751 -15.18340 -14.95855 -14.81397 -14.31594 -14.04425 -13.91326 -13.85216 -13.43071 -13.11004 -12.98672 -12.92214 -12.58237 -11.93262 -11.65318 -11.63266 -11.50517 -11.41409 -11.29117 -11.27490 -11.04616 -10.94751 -10.83656 -10.76069 -10.64231 -10.33881 -9.65718 -9.24123 -9.14919 -8.86423 -8.69958 -7.79248 -7.53264 -6.97943 -6.34992 -4.84962 0.89450 1.24992 2.56106 3.05343 3.06319 3.12230 3.15672 3.31883 3.59669 3.76920 4.10334 4.15138 4.35118 4.40681 4.61735 4.69129 4.76833 4.81142 4.95512 4.99100 5.08945 5.09421 5.15305 5.25012 5.33520 5.36843 5.42597 5.51909 5.56619 5.61801 5.65356 5.70353 5.83715 5.89483 5.96141 6.01541 6.37480 6.47996 6.67074 6.67947 6.77255 6.92194 7.03549 7.24342 7.25451 7.44355 7.75984 8.00265 8.13633 8.50217 8.81439 9.13727 10.37859 10.55065 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006485 B = 0.004102 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4316.784325 B = 6824.628039 C =10937.857511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.486 5.486 3 C 0.012 3.988 4 C -0.131 4.131 5 C 0.146 3.854 6 N -0.714 5.714 7 C 0.356 3.644 8 N -0.497 5.497 9 C 0.076 3.924 10 C -0.092 4.092 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.072 4.072 14 C 0.076 3.924 15 N -0.412 5.412 16 C 0.340 3.660 17 N -0.660 5.660 18 C 0.529 3.471 19 O -0.504 6.504 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.086 3.914 23 N -0.757 5.757 24 Si 0.914 3.086 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.004 3.996 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.393 0.607 43 H 0.273 0.727 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 6.763 10.228 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.208 5.208 3 C -0.118 4.118 4 C -0.150 4.150 5 C 0.021 3.979 6 N -0.353 5.353 7 C 0.098 3.902 8 N -0.222 5.222 9 C -0.047 4.047 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.146 4.146 13 C -0.092 4.092 14 C -0.048 4.048 15 N -0.135 5.135 16 C 0.083 3.917 17 N -0.308 5.308 18 C 0.333 3.667 19 O -0.379 6.379 20 C -0.575 4.575 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.385 5.385 24 Si 0.738 3.262 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.188 1.188 28 C -0.124 4.124 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.524 6.947 9.773 18.074 hybrid contribution -0.044 -0.926 0.122 0.935 sum -13.568 6.022 9.895 17.840 Atomic orbital electron populations 1.22863 0.89613 1.02501 1.01067 1.68520 1.09158 1.18391 1.24764 1.23908 0.96518 0.91623 0.99719 1.23284 0.99325 0.96406 0.95988 1.21242 0.91085 0.96357 0.89220 1.44253 1.43316 1.23226 1.24527 1.19242 0.91684 0.90823 0.88473 1.68064 1.28663 1.05857 1.19598 1.19089 0.97219 0.96097 0.92311 1.20474 1.00134 0.92913 0.97675 1.20712 0.98165 0.99905 0.95114 1.20738 0.97607 0.96155 1.00129 1.20767 0.99351 0.93673 0.95400 1.19498 0.95549 0.92830 0.96892 1.69129 1.24515 1.05225 1.14589 1.19681 0.91057 0.89850 0.91089 1.44635 1.40289 1.16488 1.29398 1.18603 0.78298 0.87101 0.82694 1.90763 1.60664 1.60046 1.26397 1.20791 1.21970 1.03042 1.11657 0.90990 1.25720 0.95577 0.98363 0.93875 1.69977 1.22927 1.35746 1.09840 0.86266 0.78610 0.81742 0.79600 1.19588 1.20284 1.18759 1.24169 0.96856 1.00467 0.90919 0.94620 0.91117 0.91371 0.88993 0.90844 0.87400 0.91350 0.91766 0.75581 0.85733 0.86031 0.85870 0.84827 0.77208 0.91626 0.90803 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.49 -4.35 6.55 -246.35 -1.61 -5.96 16 3 C 0.01 0.09 7.55 -2.76 -0.02 0.07 16 4 C -0.13 -1.10 3.93 -89.69 -0.35 -1.45 16 5 C 0.15 1.52 5.52 -4.04 -0.02 1.50 16 6 N -0.71 -9.33 5.68 -60.01 -0.34 -9.67 16 7 C 0.36 6.30 7.52 -155.05 -1.17 5.13 16 8 N -0.50 -8.87 9.65 -9.85 -0.10 -8.97 16 9 C 0.08 1.40 6.59 -84.77 -0.56 0.84 16 10 C -0.09 -1.38 9.97 -39.49 -0.39 -1.77 16 11 C -0.12 -1.56 9.95 -39.92 -0.40 -1.96 16 12 C -0.13 -1.80 9.95 -39.93 -0.40 -2.20 16 13 C -0.07 -1.31 9.98 -39.47 -0.39 -1.71 16 14 C 0.08 1.60 6.59 -84.78 -0.56 1.04 16 15 N -0.41 -9.97 7.94 -9.81 -0.08 -10.05 16 16 C 0.34 7.35 7.46 -154.91 -1.16 6.19 16 17 N -0.66 -14.30 5.35 -12.41 -0.07 -14.37 16 18 C 0.53 14.45 7.70 -13.09 -0.10 14.35 16 19 O -0.50 -15.87 13.26 5.16 0.07 -15.80 16 20 C -0.54 -14.22 9.53 -35.70 -0.34 -14.56 16 21 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 22 C 0.09 2.28 5.50 -17.35 -0.10 2.18 16 23 N -0.76 -21.76 11.82 55.56 0.66 -21.11 16 24 Si 0.91 19.09 29.56 -169.99 -5.02 14.06 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 28 C 0.00 0.04 7.54 -2.63 -0.02 0.02 16 29 H 0.04 0.25 7.63 -51.93 -0.40 -0.14 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16 37 H 0.41 4.70 6.61 -40.82 -0.27 4.43 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 41 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.39 6.77 6.81 -40.82 -0.28 6.49 16 43 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 44 H 0.07 0.64 7.40 -51.92 -0.38 0.25 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -35.27 377.51 -12.12 -47.39 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.92 Total: 10.62 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -5.39 Total: 8.17 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -1.54 Total: -70.12 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.07 Total: -15.80 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.27 -12.12 -47.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170254241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.895 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds