Wall clock time and date at job start Sat Apr 11 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47074 * 239.99838 * 2 1 3 5 5 C 1.52998 * 109.47152 * 174.46937 * 4 2 1 6 6 C 1.50699 * 109.47205 * 183.15580 * 5 4 2 7 7 H 1.08008 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00444 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99527 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00224 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47330 * 89.99846 * 10 8 6 12 12 H 1.48500 * 109.46636 * 209.99795 * 10 8 6 13 13 H 1.48503 * 109.47094 * 329.99497 * 10 8 6 14 14 N 1.46898 * 109.46978 * 119.99646 * 2 1 3 15 15 C 1.46891 * 111.00323 * 283.22086 * 14 2 1 16 16 C 1.50703 * 109.47503 * 173.72395 * 15 14 2 17 17 C 1.38338 * 120.44999 * 260.44851 * 16 15 14 18 18 C 1.38843 * 118.50457 * 180.26106 * 17 16 15 19 19 C 1.38067 * 119.32667 * 359.47132 * 18 17 16 20 20 N 1.31942 * 120.85409 * 0.28307 * 19 18 17 21 21 C 1.32422 * 121.62165 * 359.97438 * 20 19 18 22 22 N 1.39010 * 119.70189 * 179.97438 * 21 20 19 23 23 C 1.46506 * 119.99915 * 88.67392 * 22 21 20 24 24 S 1.65592 * 120.00125 * 268.67577 * 22 21 20 25 25 C 1.81394 * 104.45191 * 90.00134 * 24 22 21 26 26 O 1.42106 * 104.27943 * 206.07121 * 24 22 21 27 27 O 1.42096 * 104.27827 * 333.92771 * 24 22 21 28 28 H 1.09003 * 109.47051 * 60.00049 * 1 2 3 29 29 H 1.08990 * 109.47284 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46952 * 300.00370 * 1 2 3 31 31 H 1.09000 * 109.46850 * 294.47180 * 4 2 1 32 32 H 1.09004 * 109.47100 * 54.46802 * 4 2 1 33 33 H 1.09001 * 109.46831 * 303.14804 * 5 4 2 34 34 H 1.08999 * 109.47381 * 63.15470 * 5 4 2 35 35 H 0.96998 * 119.99502 * 180.02562 * 9 8 6 36 36 H 1.00898 * 111.00185 * 47.18084 * 14 2 1 37 37 H 1.08995 * 109.47492 * 53.72095 * 15 14 2 38 38 H 1.09007 * 109.47086 * 293.72303 * 15 14 2 39 39 H 1.07996 * 120.75189 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.33416 * 179.75628 * 18 17 16 41 41 H 1.08000 * 119.57265 * 180.25608 * 19 18 17 42 42 H 1.09002 * 109.46983 * 95.09676 * 23 22 21 43 43 H 1.08996 * 109.47017 * 215.09592 * 23 22 21 44 44 H 1.08998 * 109.46862 * 335.09685 * 23 22 21 45 45 H 1.08997 * 109.47200 * 59.99929 * 25 24 22 46 46 H 1.08998 * 109.47309 * 180.02562 * 25 24 22 47 47 H 1.09009 * 109.46881 * 299.99959 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5636 -0.6020 -1.3207 6 6 4.0588 -1.2452 -2.5904 7 1 3.3570 -1.6945 -3.2775 8 6 5.4079 -1.2610 -2.8745 9 7 6.2626 -0.7143 -2.0376 10 14 6.0216 -2.0576 -4.4488 11 1 6.0578 -1.0450 -5.5344 12 1 7.3875 -2.5979 -4.2301 13 1 5.1076 -3.1631 -4.8331 14 7 2.0196 -0.6924 1.1995 15 6 1.8994 0.1633 2.3873 16 6 2.2643 -0.6289 3.6163 17 6 1.2771 -1.1659 4.4230 18 6 1.6588 -1.8840 5.5483 19 6 3.0020 -2.0495 5.8215 20 7 3.9222 -1.5302 5.0312 21 6 3.5984 -0.8348 3.9518 22 7 4.6007 -0.3050 3.1475 23 6 5.1591 -1.1021 2.0524 24 16 5.1635 1.2270 3.4270 25 6 6.5338 1.0001 4.5937 26 8 5.6507 1.6575 2.1633 27 8 4.0764 1.8902 4.0575 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7597 -1.7735 -1.2010 32 1 1.5980 -0.2679 -2.1365 33 1 3.8464 0.4506 -1.3125 34 1 4.0081 -1.1045 -0.4616 35 1 7.2116 -0.7251 -2.2377 36 1 1.5365 -1.5679 1.3341 37 1 0.8731 0.5195 2.4762 38 1 2.5726 1.0152 2.2910 39 1 0.2329 -1.0257 4.1854 40 1 0.9125 -2.3127 6.2008 41 1 3.3033 -2.6109 6.6935 42 1 4.6447 -0.8546 1.1238 43 1 6.2218 -0.8829 1.9487 44 1 5.0263 -2.1619 2.2701 45 1 7.2942 0.3634 4.1416 46 1 6.9686 1.9696 4.8366 47 1 6.1615 0.5308 5.5045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:36 Heat of formation + Delta-G solvation = -24.868299 kcal Electronic energy + Delta-G solvation = -29467.080495 eV Core-core repulsion = 25584.533731 eV Total energy + Delta-G solvation = -3882.546764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.54193 -37.29038 -36.96268 -35.98786 -35.67801 -33.86423 -32.70101 -31.26241 -29.95009 -29.42771 -28.75060 -26.10372 -25.49146 -24.70258 -23.07407 -21.88102 -21.18397 -19.84534 -19.30370 -17.92984 -17.08453 -16.68446 -16.09219 -15.97698 -15.80170 -15.27239 -15.17890 -14.54784 -14.31572 -13.85029 -13.71640 -13.57493 -13.32755 -13.14574 -13.12122 -12.89993 -12.81553 -12.43411 -12.36616 -12.15504 -12.09758 -11.92549 -11.80352 -11.53664 -11.41223 -11.16234 -11.04119 -10.92134 -10.78902 -10.41380 -10.21717 -9.95748 -9.85599 -9.57477 -9.17424 -8.98430 -8.88954 -8.71491 -8.15197 -7.89925 -5.81337 -3.82788 0.26512 0.98181 1.16145 2.58334 3.40536 3.46959 3.49715 3.56164 3.93979 4.14763 4.40551 4.51079 4.58837 4.71807 4.76024 4.87307 4.88790 4.97848 5.06075 5.31803 5.37947 5.49729 5.52874 5.55557 5.62686 5.65431 5.70882 5.93223 5.97437 6.06099 6.12876 6.19506 6.22386 6.29173 6.35244 6.41903 6.67273 6.85843 6.91989 6.99169 7.33454 7.47209 7.78024 7.84231 7.92639 8.15396 8.29670 8.63381 9.25258 9.79064 11.28536 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.004310 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.061449 B = 6494.520214 C = 7708.962074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.099 4.099 5 C 0.027 3.973 6 C -0.520 4.520 7 H 0.049 0.951 8 C 0.059 3.941 9 N -0.887 5.887 10 Si 0.883 3.117 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.662 5.662 15 C 0.102 3.898 16 C -0.100 4.100 17 C -0.067 4.067 18 C -0.171 4.171 19 C 0.106 3.894 20 N -0.494 5.494 21 C 0.375 3.625 22 N -0.935 5.935 23 C 0.096 3.904 24 S 2.600 3.400 25 C -0.673 4.673 26 O -0.923 6.923 27 O -0.957 6.957 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.011 0.989 34 H 0.036 0.964 35 H 0.258 0.742 36 H 0.335 0.665 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -0.459 18.667 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.010 4.010 6 C -0.559 4.559 7 H 0.067 0.933 8 C -0.142 4.142 9 N -0.526 5.526 10 Si 0.712 3.288 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.202 1.202 14 N -0.292 5.292 15 C -0.027 4.027 16 C -0.106 4.106 17 C -0.094 4.094 18 C -0.191 4.191 19 C -0.052 4.052 20 N -0.205 5.205 21 C 0.146 3.854 22 N -0.769 5.769 23 C -0.046 4.046 24 S 2.693 3.307 25 C -0.823 4.823 26 O -0.913 6.913 27 O -0.947 6.947 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.064 0.415 18.334 19.315 hybrid contribution -0.893 -0.879 -0.398 1.314 sum -6.957 -0.463 17.935 19.243 Atomic orbital electron populations 1.22549 0.98803 1.01413 1.01367 1.21798 0.90862 0.98914 0.91165 0.90577 1.21640 1.00882 0.98133 0.93008 1.19102 0.88061 0.97034 0.96819 1.21312 0.91880 1.36720 1.05963 0.93309 1.24970 0.97162 0.95747 0.96321 1.69987 1.02069 1.44775 1.35757 0.86752 0.78031 0.79608 0.84454 1.20960 1.21433 1.20196 1.60643 1.61587 1.05900 1.01053 1.20802 0.99648 0.95363 0.86910 1.20926 0.93157 0.98870 0.97645 1.21472 0.99601 0.94841 0.93500 1.22113 0.97790 1.00724 0.98455 1.22496 0.88753 0.96468 0.97497 1.67326 1.39524 1.08878 1.04804 1.17507 0.86177 0.93310 0.88449 1.54985 1.47672 1.34737 1.39483 1.21941 0.98470 0.95018 0.89169 1.05494 0.76369 0.72932 0.75929 1.30561 1.21473 1.11348 1.18878 1.93736 1.82048 1.78358 1.37189 1.93585 1.50288 1.71888 1.78937 0.92199 0.92919 0.93647 0.93621 0.93328 0.97034 0.94546 0.93266 0.84697 0.94189 0.90125 0.84645 0.84587 0.82529 0.87243 0.91348 0.91586 0.85106 0.85784 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.16 37.16 0.34 -2.07 16 2 C 0.08 1.36 2.56 -67.71 -0.17 1.19 16 3 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.68 4.83 -27.88 -0.13 0.55 16 6 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 7 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.88 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.66 -10.35 5.29 -108.00 -0.57 -10.92 16 15 C 0.10 1.50 5.33 -4.98 -0.03 1.47 16 16 C -0.10 -1.36 5.23 -104.27 -0.54 -1.91 16 17 C -0.07 -0.70 9.81 -39.32 -0.39 -1.09 16 18 C -0.17 -1.52 10.10 -39.42 -0.40 -1.92 16 19 C 0.11 1.08 11.17 -17.57 -0.20 0.88 16 20 N -0.49 -6.54 10.39 -12.44 -0.13 -6.67 16 21 C 0.37 5.50 5.40 -155.01 -0.84 4.66 16 22 N -0.94 -14.58 2.42 -67.21 -0.16 -14.74 16 23 C 0.10 1.66 10.12 59.85 0.61 2.26 16 24 S 2.60 39.95 5.52 -107.50 -0.59 39.36 16 25 C -0.67 -7.31 10.99 101.05 1.11 -6.20 16 26 O -0.92 -18.03 17.19 -57.54 -0.99 -19.02 16 27 O -0.96 -16.10 16.24 -57.54 -0.93 -17.04 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.54 6.89 -51.93 -0.36 0.18 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.04 0.96 5.32 -51.93 -0.28 0.68 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.34 4.76 8.51 -39.29 -0.33 4.43 16 37 H 0.04 0.51 6.66 -51.93 -0.35 0.17 16 38 H 0.08 1.38 6.42 -51.93 -0.33 1.04 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.11 2.27 5.10 -51.93 -0.26 2.00 16 43 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 44 H 0.07 1.05 8.01 -51.93 -0.42 0.64 16 45 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 47 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -34.80 393.51 -10.26 -45.06 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.35 Total: 4.73 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.18 Total: -17.76 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.13 Total: -58.14 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.92 Total: -36.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 39.95 SS G_CDS: -0.59 Total: 39.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.80 -10.26 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.193 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds